File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF469DMX.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF469DMX.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF469DMX.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF469DMX.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF469DMX.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF546JZR.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF546JZR.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF546JZR.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF546JZR.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF546JZR.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.642M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.642M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.642M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.642M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.642M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.642M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.642M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.642M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.642M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.642M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.642M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.642M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF469DMX.crop_101-2bp.nodup.pr1_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF469DMX.crop_101-2bp.nodup.pr1_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF469DMX.crop_101-2bp.nodup.pr1_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF469DMX.crop_101-2bp.nodup.pr1_x_ctl.pooled.270M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF469DMX.crop_101-2bp.nodup.pr2_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF469DMX.crop_101-2bp.nodup.pr2_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF469DMX.crop_101-2bp.nodup.pr2_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF469DMX.crop_101-2bp.nodup.pr2_x_ctl.pooled.270M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF469DMX.crop_101-2bp.nodup_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF469DMX.crop_101-2bp.nodup_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF469DMX.crop_101-2bp.nodup_x_ctl.pooled.270M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF469DMX.crop_101-2bp.nodup_x_ctl.pooled.270M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF546JZR.crop_101-2bp.nodup.pr1_x_ctl.pooled.371M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF546JZR.crop_101-2bp.nodup.pr1_x_ctl.pooled.371M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF546JZR.crop_101-2bp.nodup.pr1_x_ctl.pooled.371M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF546JZR.crop_101-2bp.nodup.pr1_x_ctl.pooled.371M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF546JZR.crop_101-2bp.nodup.pr2_x_ctl.pooled.371M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF546JZR.crop_101-2bp.nodup.pr2_x_ctl.pooled.371M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF546JZR.crop_101-2bp.nodup.pr2_x_ctl.pooled.371M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF546JZR.crop_101-2bp.nodup.pr2_x_ctl.pooled.371M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF546JZR.crop_101-2bp.nodup_x_ctl.pooled.371M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF546JZR.crop_101-2bp.nodup_x_ctl.pooled.371M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF546JZR.crop_101-2bp.nodup_x_ctl.pooled.371M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF546JZR.crop_101-2bp.nodup_x_ctl.pooled.371M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.642M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.642M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.642M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF469DMX.crop_101-2bp.nodup.pr1_x_ctl.pooled.270M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF469DMX.crop_101-2bp.nodup.pr2_x_ctl.pooled.270M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF469DMX.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF469DMX.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF469DMX.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF469DMX.crop_101-2bp.nodup_x_ctl.pooled.270M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF469DMX.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF469DMX.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF469DMX.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF546JZR.crop_101-2bp.nodup.pr1_x_ctl.pooled.371M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF546JZR.crop_101-2bp.nodup.pr2_x_ctl.pooled.371M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF546JZR.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF546JZR.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF546JZR.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF546JZR.crop_101-2bp.nodup_x_ctl.pooled.371M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF546JZR.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF546JZR.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF546JZR.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF469DMX.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/0e0c2b88-49e2-4936-b3c6-f57d5245f539/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.642M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.642M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF469DMX.crop_101-2bp.nodup_x_ctl.pooled.270M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF469DMX.crop_101-2bp.nodup_x_ctl.pooled.270M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF546JZR.crop_101-2bp.nodup_x_ctl.pooled.371M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/198fcf16-2af8-437a-9091-47fb7e96fe2e/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF546JZR.crop_101-2bp.nodup_x_ctl.pooled.371M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 5601283841419956543 chip.macs2_signal_track_pooled 4012782195039018678 BW FC 5601283841419956543->4012782195039018678 6031301745643493913 BW p-val 5601283841419956543->6031301745643493913 5855762072055040241 chip.call_peak_pooled 4735017060749852421 Peak (bfilt) 5855762072055040241->4735017060749852421 933173947198406795 Peak 5855762072055040241->933173947198406795 -2867026248113524303 chip.idr_ppr 933173947198406795->-2867026248113524303 -4742660404047239324 chip.idr 933173947198406795->-4742660404047239324 -8448380082801136318 chip.overlap 933173947198406795->-8448380082801136318 -4363776396745297382 chip.overlap_ppr 933173947198406795->-4363776396745297382 327353311900964528 chip.pool_ta -6567442210155040900 TAG-ALIGN 327353311900964528->-6567442210155040900 -6567442210155040900->5601283841419956543 -6567442210155040900->5855762072055040241 -6567442210155040900->-2867026248113524303 -6567442210155040900->-4742660404047239324 -6567442210155040900->-8448380082801136318 -6567442210155040900->-4363776396745297382 -8217877588296960578 chip.call_peak 3818223009154971496 Peak (bfilt) -8217877588296960578->3818223009154971496 7309261587219325178 Peak -8217877588296960578->7309261587219325178 7309261587219325178->-4742660404047239324 7309261587219325178->-8448380082801136318 -1783203967043383210 chip.reproducibility_overlap 7309261587219325178->-1783203967043383210 3689808782489626937 chip.reproducibility_idr 7309261587219325178->3689808782489626937 8889085654341086093 chip.bam2ta 7578611869938449459 TAG-ALIGN 8889085654341086093->7578611869938449459 7578611869938449459->327353311900964528 7578611869938449459->-8217877588296960578 7481569642263354995 chip.macs2_signal_track 7578611869938449459->7481569642263354995 7578611869938449459->-2867026248113524303 7578611869938449459->-1783203967043383210 7578611869938449459->3689808782489626937 7578611869938449459->-4363776396745297382 761122868389856283 chip.filter 6824693254569497543 SAMstats QC 761122868389856283->6824693254569497543 1547156940001668885 Filt/deduped BAM 761122868389856283->1547156940001668885 1841766005891056798 LibCmplx QC 761122868389856283->1841766005891056798 1547156940001668885->8889085654341086093 4440788074320075641 chip.jsd 1547156940001668885->4440788074320075641 7095336751274859613 chip.align 8628602639628645603 SAMstats QC 7095336751274859613->8628602639628645603 -3431147847161966701 BAM 7095336751274859613->-3431147847161966701 -3431147847161966701->761122868389856283 -904541834313241099 chip.xcor 8237845468949275263 XCOR Plot -904541834313241099->8237845468949275263 -3394776850883328620 BW FC 7481569642263354995->-3394776850883328620 -8348257381189929502 BW p-val 7481569642263354995->-8348257381189929502 -1589929121393270921 FASTQ R1 (1) -1589929121393270921->7095336751274859613 -1589929121393270921->-904541834313241099 -5556649061641366865 FASTQ R2 (1) -5556649061641366865->7095336751274859613 2256735022874283051 chip.call_peak -2337972594392001343 Peak (bfilt) 2256735022874283051->-2337972594392001343 -9146302738785332589 Peak 2256735022874283051->-9146302738785332589 -9146302738785332589->-4742660404047239324 -9146302738785332589->-8448380082801136318 -9146302738785332589->-1783203967043383210 -9146302738785332589->3689808782489626937 -5922618006301958329 chip.bam2ta -2783554477804300484 TAG-ALIGN -5922618006301958329->-2783554477804300484 -2783554477804300484->327353311900964528 -2783554477804300484->2256735022874283051 -1274619148513614227 chip.macs2_signal_track -2783554477804300484->-1274619148513614227 -2783554477804300484->-2867026248113524303 -2783554477804300484->-1783203967043383210 -2783554477804300484->3689808782489626937 -2783554477804300484->-4363776396745297382 -3534016890658466060 chip.filter 7919427335992261169 SAMstats QC -3534016890658466060->7919427335992261169 3023347632763165577 Filt/deduped BAM -3534016890658466060->3023347632763165577 8750218799335861521 LibCmplx QC -3534016890658466060->8750218799335861521 3023347632763165577->-5922618006301958329 3023347632763165577->4440788074320075641 -4187379236502105062 chip.align 3382498857747193178 SAMstats QC -4187379236502105062->3382498857747193178 4979485485292473199 BAM -4187379236502105062->4979485485292473199 4979485485292473199->-3534016890658466060 1521587566425036287 chip.xcor -4931401868895610126 XCOR Plot 1521587566425036287->-4931401868895610126 5109911841130829199 BW FC -1274619148513614227->5109911841130829199 -4478423004696786047 BW p-val -1274619148513614227->-4478423004696786047 4021945026200458138 FASTQ R1 (1) 4021945026200458138->-4187379236502105062 4021945026200458138->1521587566425036287 -2947566285964013929 FASTQ R2 (1) -2947566285964013929->-4187379236502105062 1625177639246623931 chip.pool_ta_ctl -1981062542526338725 TAG-ALIGN 1625177639246623931->-1981062542526338725 -1981062542526338725->5601283841419956543 -1981062542526338725->5855762072055040241 -1981062542526338725->-8217877588296960578 -1981062542526338725->7481569642263354995 -1981062542526338725->2256735022874283051 -1981062542526338725->-1274619148513614227 -1981062542526338725->-2867026248113524303 -1981062542526338725->-1783203967043383210 -1981062542526338725->3689808782489626937 -1981062542526338725->-4363776396745297382 9049862986066009545 chip.bam2ta_ctl 7959086727628775904 TAG-ALIGN 9049862986066009545->7959086727628775904 7959086727628775904->1625177639246623931 1987900803147837717 Filt/deduped BAM 1987900803147837717->9049862986066009545 1987900803147837717->4440788074320075641 -5998758721068160355 chip.bam2ta_ctl -5001023322182133497 TAG-ALIGN -5998758721068160355->-5001023322182133497 -5001023322182133497->1625177639246623931 -1633250775348064541 Filt/deduped BAM -1633250775348064541->-5998758721068160355 -1633250775348064541->4440788074320075641 -6525685136431205263 chip.bam2ta_ctl -959296800747515160 TAG-ALIGN -6525685136431205263->-959296800747515160 -959296800747515160->1625177639246623931 6197434266283369807 Filt/deduped BAM 6197434266283369807->-6525685136431205263 6197434266283369807->4440788074320075641 3557404964317017514 chip.bam2ta_ctl 1981309246370891517 TAG-ALIGN 3557404964317017514->1981309246370891517 1981309246370891517->1625177639246623931 -7707341606076633096 Filt/deduped BAM -7707341606076633096->3557404964317017514 -7707341606076633096->4440788074320075641 8374457840839588705 chip.bam2ta_ctl 2914741583727639241 TAG-ALIGN 8374457840839588705->2914741583727639241 2914741583727639241->1625177639246623931 6943351076882508522 Filt/deduped BAM 6943351076882508522->8374457840839588705 6943351076882508522->4440788074320075641 -9098304033668251728 chip.bam2ta_ctl -241342053314564093 TAG-ALIGN -9098304033668251728->-241342053314564093 -241342053314564093->1625177639246623931 6187525539229698606 Filt/deduped BAM 6187525539229698606->-9098304033668251728 6187525539229698606->4440788074320075641 -8212859440377117047 chip.bam2ta_ctl -719772140828758116 TAG-ALIGN -8212859440377117047->-719772140828758116 -719772140828758116->1625177639246623931 -7816485808305546273 Filt/deduped BAM -7816485808305546273->-8212859440377117047 -7816485808305546273->4440788074320075641 2344154598915384069 chip.bam2ta_ctl -7887211489776142879 TAG-ALIGN 2344154598915384069->-7887211489776142879 -7887211489776142879->1625177639246623931 8448390787018663903 Filt/deduped BAM 8448390787018663903->2344154598915384069 8448390787018663903->4440788074320075641 -2909352253253819680 chip.bam2ta_ctl -2919142582509632205 TAG-ALIGN -2909352253253819680->-2919142582509632205 -2919142582509632205->1625177639246623931 7605109865828346897 Filt/deduped BAM 7605109865828346897->-2909352253253819680 7605109865828346897->4440788074320075641 -2841439462886114374 chip.bam2ta_ctl -4809011989335514385 TAG-ALIGN -2841439462886114374->-4809011989335514385 -4809011989335514385->1625177639246623931 1951542999131668556 Filt/deduped BAM 1951542999131668556->-2841439462886114374 1951542999131668556->4440788074320075641 -119999388996440145 chip.bam2ta_ctl -3286672616288999214 TAG-ALIGN -119999388996440145->-3286672616288999214 -3286672616288999214->1625177639246623931 -7299711823806179601 Filt/deduped BAM -7299711823806179601->-119999388996440145 -7299711823806179601->4440788074320075641 -6738520257235964003 chip.bam2ta_ctl -5294214846066588719 TAG-ALIGN -6738520257235964003->-5294214846066588719 -5294214846066588719->1625177639246623931 2189058832775353443 Filt/deduped BAM 2189058832775353443->-6738520257235964003 2189058832775353443->4440788074320075641 1657742461720933682 chip.bam2ta_ctl -2961149729420193653 TAG-ALIGN 1657742461720933682->-2961149729420193653 -2961149729420193653->1625177639246623931 -419930425573287053 Filt/deduped BAM -419930425573287053->1657742461720933682 -419930425573287053->4440788074320075641 -4766030783403212145 chip.bam2ta_ctl 3538574635756430390 TAG-ALIGN -4766030783403212145->3538574635756430390 3538574635756430390->1625177639246623931 -8551133742591071334 Filt/deduped BAM -8551133742591071334->-4766030783403212145 -8551133742591071334->4440788074320075641 8797260919994062669 chip.bam2ta_ctl 1453341343336608163 TAG-ALIGN 8797260919994062669->1453341343336608163 1453341343336608163->1625177639246623931 -2926255401626687734 Filt/deduped BAM -2926255401626687734->8797260919994062669 -2926255401626687734->4440788074320075641 730560042681594086 chip.bam2ta_ctl 4576703413225918713 TAG-ALIGN 730560042681594086->4576703413225918713 4576703413225918713->1625177639246623931 5849651686496657940 Filt/deduped BAM 5849651686496657940->730560042681594086 5849651686496657940->4440788074320075641 1095190113366101188 chip.bam2ta_ctl -5285552588408792414 TAG-ALIGN 1095190113366101188->-5285552588408792414 -5285552588408792414->1625177639246623931 7009641240301047342 Filt/deduped BAM 7009641240301047342->1095190113366101188 7009641240301047342->4440788074320075641 910412103193306964 chip.bam2ta_ctl 3102240633602835260 TAG-ALIGN 910412103193306964->3102240633602835260 3102240633602835260->1625177639246623931 -2967633643312995973 Filt/deduped BAM -2967633643312995973->910412103193306964 -2967633643312995973->4440788074320075641 639989317210785021 chip.bam2ta_ctl -1569725336417256089 TAG-ALIGN 639989317210785021->-1569725336417256089 -1569725336417256089->1625177639246623931 -1687693916403909902 Filt/deduped BAM -1687693916403909902->639989317210785021 -1687693916403909902->4440788074320075641 6977009748005456167 chip.bam2ta_ctl 3496709169998553248 TAG-ALIGN 6977009748005456167->3496709169998553248 3496709169998553248->1625177639246623931 4789128880457685710 Filt/deduped BAM 4789128880457685710->6977009748005456167 4789128880457685710->4440788074320075641 -5165591370995895734 chip.bam2ta_ctl 8433575839530145993 TAG-ALIGN -5165591370995895734->8433575839530145993 8433575839530145993->1625177639246623931 -1132230851070340827 Filt/deduped BAM -1132230851070340827->-5165591370995895734 -1132230851070340827->4440788074320075641 4761685983871898072 chip.bam2ta_ctl 7862020511628495754 TAG-ALIGN 4761685983871898072->7862020511628495754 7862020511628495754->1625177639246623931 935300003821670577 Filt/deduped BAM 935300003821670577->4761685983871898072 935300003821670577->4440788074320075641 -2035891232602408870 chip.bam2ta_ctl -5318607783653576167 TAG-ALIGN -2035891232602408870->-5318607783653576167 -5318607783653576167->1625177639246623931 5603485064379654183 Filt/deduped BAM 5603485064379654183->-2035891232602408870 5603485064379654183->4440788074320075641 2364176567000286001 chip.bam2ta_ctl -5854117593463284849 TAG-ALIGN 2364176567000286001->-5854117593463284849 -5854117593463284849->1625177639246623931 1212839942284263705 Filt/deduped BAM 1212839942284263705->2364176567000286001 1212839942284263705->4440788074320075641 727447797354174167 IDR Plot ppr -2867026248113524303->727447797354174167 801157340661574990 IDR Peak ppr -2867026248113524303->801157340661574990 801157340661574990->3689808782489626937 7747672092408232445 IDR Plot rep1_vs_rep2 -4742660404047239324->7747672092408232445 -9180741348006540849 IDR NPeak rep1_vs_rep2 -4742660404047239324->-9180741348006540849 -9180741348006540849->3689808782489626937 6707167446532677163 Overlap Peak rep1_vs_rep2 -8448380082801136318->6707167446532677163 6707167446532677163->-1783203967043383210 -5834357487201403321 Overlap Peak optimal -1783203967043383210->-5834357487201403321 -5398570619469102225 Overlap reproducibility -1783203967043383210->-5398570619469102225 -6437966658119714734 IDR Peak optimal 3689808782489626937->-6437966658119714734 7141380708731285524 IDR reproducibility 3689808782489626937->7141380708731285524 3356885495527011763 Overlap Peak ppr -4363776396745297382->3356885495527011763 3356885495527011763->-1783203967043383210 -2095937385088876594 JSD Plot 4440788074320075641->-2095937385088876594

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