File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF589GMJ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF589GMJ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF589GMJ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF589GMJ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF589GMJ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF413POC.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF413POC.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF413POC.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF413POC.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF413POC.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.477M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.477M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.477M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF589GMJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF589GMJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF589GMJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF589GMJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF589GMJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF589GMJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF589GMJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF589GMJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF589GMJ.crop_101-2bp.nodup_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF589GMJ.crop_101-2bp.nodup_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF589GMJ.crop_101-2bp.nodup_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF589GMJ.crop_101-2bp.nodup_x_ctl.pooled.296M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF413POC.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF413POC.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF413POC.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF413POC.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF413POC.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF413POC.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF413POC.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF413POC.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF413POC.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF413POC.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF413POC.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF413POC.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.477M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF589GMJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF589GMJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF589GMJ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF589GMJ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF589GMJ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF589GMJ.crop_101-2bp.nodup_x_ctl.pooled.296M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF589GMJ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF589GMJ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF589GMJ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF413POC.crop_101-2bp.nodup.pr1_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF413POC.crop_101-2bp.nodup.pr2_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF413POC.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF413POC.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF413POC.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF413POC.crop_101-2bp.nodup_x_ctl.pooled.200M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF413POC.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF413POC.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF413POC.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF589GMJ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/9874b50a-6856-4713-8001-8668f1afdf0e/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.477M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.477M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF589GMJ.crop_101-2bp.nodup_x_ctl.pooled.296M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF589GMJ.crop_101-2bp.nodup_x_ctl.pooled.296M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF413POC.crop_101-2bp.nodup_x_ctl.pooled.200M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF413POC.crop_101-2bp.nodup_x_ctl.pooled.200M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 744044654879356134 chip.macs2_signal_track_pooled -6147971782201905508 BW FC 744044654879356134->-6147971782201905508 5853386458384389487 BW p-val 744044654879356134->5853386458384389487 -2538172278024326126 chip.call_peak_pooled -8740837592455472390 Peak (bfilt) -2538172278024326126->-8740837592455472390 -7706309410743383293 Peak -2538172278024326126->-7706309410743383293 1078312666653883027 chip.idr_ppr -7706309410743383293->1078312666653883027 7671238408680857257 chip.idr -7706309410743383293->7671238408680857257 7773724252475887396 chip.overlap -7706309410743383293->7773724252475887396 -879740127310100761 chip.overlap_ppr -7706309410743383293->-879740127310100761 103038720050128310 chip.pool_ta -1856151334590907864 TAG-ALIGN 103038720050128310->-1856151334590907864 -1856151334590907864->744044654879356134 -1856151334590907864->-2538172278024326126 -1856151334590907864->1078312666653883027 -1856151334590907864->7671238408680857257 -1856151334590907864->7773724252475887396 -1856151334590907864->-879740127310100761 -3735064210407347993 chip.call_peak 6575353283734978282 Peak (bfilt) -3735064210407347993->6575353283734978282 799121917959671481 Peak -3735064210407347993->799121917959671481 799121917959671481->7671238408680857257 799121917959671481->7773724252475887396 9073162241031675784 chip.reproducibility_overlap 799121917959671481->9073162241031675784 3260430041806885781 chip.reproducibility_idr 799121917959671481->3260430041806885781 -3172585305751984948 chip.bam2ta -4101208943859097986 TAG-ALIGN -3172585305751984948->-4101208943859097986 -4101208943859097986->103038720050128310 -4101208943859097986->-3735064210407347993 5569598993413308263 chip.macs2_signal_track -4101208943859097986->5569598993413308263 -4101208943859097986->1078312666653883027 -4101208943859097986->9073162241031675784 -4101208943859097986->3260430041806885781 -4101208943859097986->-879740127310100761 -5919395875024190272 chip.filter -6463375094230015712 SAMstats QC -5919395875024190272->-6463375094230015712 6644225487185534980 Filt/deduped BAM -5919395875024190272->6644225487185534980 -7430964307179809310 LibCmplx QC -5919395875024190272->-7430964307179809310 6644225487185534980->-3172585305751984948 1453154835024881592 chip.jsd 6644225487185534980->1453154835024881592 8534905603575436652 chip.align -2367347868274595013 SAMstats QC 8534905603575436652->-2367347868274595013 2371836263009086538 BAM 8534905603575436652->2371836263009086538 2371836263009086538->-5919395875024190272 1658744503056322580 chip.xcor -4919515464427323270 XCOR Plot 1658744503056322580->-4919515464427323270 7842021181514232534 BW FC 5569598993413308263->7842021181514232534 -8025473020628961638 BW p-val 5569598993413308263->-8025473020628961638 -1718259722938211191 FASTQ R1 (1) -1718259722938211191->8534905603575436652 -1718259722938211191->1658744503056322580 2595933317688582716 FASTQ R2 (1) 2595933317688582716->8534905603575436652 -7419072030546723880 chip.call_peak 7128025651955491233 Peak (bfilt) -7419072030546723880->7128025651955491233 -8905262621155604180 Peak -7419072030546723880->-8905262621155604180 -8905262621155604180->7671238408680857257 -8905262621155604180->7773724252475887396 -8905262621155604180->9073162241031675784 -8905262621155604180->3260430041806885781 -3125078498169534188 chip.bam2ta -3549412559347184155 TAG-ALIGN -3125078498169534188->-3549412559347184155 -3549412559347184155->103038720050128310 -3549412559347184155->-7419072030546723880 -7169125349758610513 chip.macs2_signal_track -3549412559347184155->-7169125349758610513 -3549412559347184155->1078312666653883027 -3549412559347184155->9073162241031675784 -3549412559347184155->3260430041806885781 -3549412559347184155->-879740127310100761 -2825305112487571951 chip.filter 5604414093471185395 SAMstats QC -2825305112487571951->5604414093471185395 547355698512689598 Filt/deduped BAM -2825305112487571951->547355698512689598 7604310483387422373 LibCmplx QC -2825305112487571951->7604310483387422373 547355698512689598->-3125078498169534188 547355698512689598->1453154835024881592 -3853956287668902829 chip.align -3523724069659419198 SAMstats QC -3853956287668902829->-3523724069659419198 1024963670111476011 BAM -3853956287668902829->1024963670111476011 1024963670111476011->-2825305112487571951 -3016470452485858528 chip.xcor -9054519361544405225 XCOR Plot -3016470452485858528->-9054519361544405225 -9025358289715928368 BW FC -7169125349758610513->-9025358289715928368 6378744443859351273 BW p-val -7169125349758610513->6378744443859351273 1921860499935091473 FASTQ R1 (1) 1921860499935091473->-3853956287668902829 1921860499935091473->-3016470452485858528 7744657341112021461 FASTQ R2 (1) 7744657341112021461->-3853956287668902829 6218728881336920546 chip.pool_ta_ctl -2786946731560144339 TAG-ALIGN 6218728881336920546->-2786946731560144339 -2786946731560144339->744044654879356134 -2786946731560144339->-2538172278024326126 -2786946731560144339->-3735064210407347993 -2786946731560144339->5569598993413308263 -2786946731560144339->-7419072030546723880 -2786946731560144339->-7169125349758610513 -2786946731560144339->1078312666653883027 -2786946731560144339->9073162241031675784 -2786946731560144339->3260430041806885781 -2786946731560144339->-879740127310100761 -4693805337670824489 chip.bam2ta_ctl 1214764721996879192 TAG-ALIGN -4693805337670824489->1214764721996879192 1214764721996879192->6218728881336920546 7666953556676578908 Filt/deduped BAM 7666953556676578908->-4693805337670824489 7666953556676578908->1453154835024881592 6001908104524100952 chip.bam2ta_ctl 7648319170990646551 TAG-ALIGN 6001908104524100952->7648319170990646551 7648319170990646551->6218728881336920546 3168698882481032369 Filt/deduped BAM 3168698882481032369->6001908104524100952 3168698882481032369->1453154835024881592 5210571944444949510 chip.bam2ta_ctl -1741512906801645039 TAG-ALIGN 5210571944444949510->-1741512906801645039 -1741512906801645039->6218728881336920546 3124216675422757336 Filt/deduped BAM 3124216675422757336->5210571944444949510 3124216675422757336->1453154835024881592 -3783757825242373640 chip.bam2ta_ctl -3095569760748784709 TAG-ALIGN -3783757825242373640->-3095569760748784709 -3095569760748784709->6218728881336920546 -8730833906206056009 Filt/deduped BAM -8730833906206056009->-3783757825242373640 -8730833906206056009->1453154835024881592 7384921411124416343 chip.bam2ta_ctl -4271296979543652199 TAG-ALIGN 7384921411124416343->-4271296979543652199 -4271296979543652199->6218728881336920546 -1242557400079556481 Filt/deduped BAM -1242557400079556481->7384921411124416343 -1242557400079556481->1453154835024881592 -256350704892022988 chip.bam2ta_ctl -389784269863318648 TAG-ALIGN -256350704892022988->-389784269863318648 -389784269863318648->6218728881336920546 3899141255668716000 Filt/deduped BAM 3899141255668716000->-256350704892022988 3899141255668716000->1453154835024881592 -2980886521318331343 chip.bam2ta_ctl 5783594483337970454 TAG-ALIGN -2980886521318331343->5783594483337970454 5783594483337970454->6218728881336920546 -5839399725928038958 Filt/deduped BAM -5839399725928038958->-2980886521318331343 -5839399725928038958->1453154835024881592 -8069024416507156999 chip.bam2ta_ctl -8139299661741422896 TAG-ALIGN -8069024416507156999->-8139299661741422896 -8139299661741422896->6218728881336920546 4132921703038898667 Filt/deduped BAM 4132921703038898667->-8069024416507156999 4132921703038898667->1453154835024881592 -4441420468084947151 chip.bam2ta_ctl 2677416471660414417 TAG-ALIGN -4441420468084947151->2677416471660414417 2677416471660414417->6218728881336920546 -4662386411438537699 Filt/deduped BAM -4662386411438537699->-4441420468084947151 -4662386411438537699->1453154835024881592 7230618398897375103 chip.bam2ta_ctl 9042124415563265029 TAG-ALIGN 7230618398897375103->9042124415563265029 9042124415563265029->6218728881336920546 785284301277508676 Filt/deduped BAM 785284301277508676->7230618398897375103 785284301277508676->1453154835024881592 8883062364891946037 chip.bam2ta_ctl 6608934044977088552 TAG-ALIGN 8883062364891946037->6608934044977088552 6608934044977088552->6218728881336920546 -3654642571279833948 Filt/deduped BAM -3654642571279833948->8883062364891946037 -3654642571279833948->1453154835024881592 2518498415212402396 chip.bam2ta_ctl -1904221187519989913 TAG-ALIGN 2518498415212402396->-1904221187519989913 -1904221187519989913->6218728881336920546 5365467305636128087 Filt/deduped BAM 5365467305636128087->2518498415212402396 5365467305636128087->1453154835024881592 4016919075627119447 chip.bam2ta_ctl -1403304564545472891 TAG-ALIGN 4016919075627119447->-1403304564545472891 -1403304564545472891->6218728881336920546 -8680941182369489621 Filt/deduped BAM -8680941182369489621->4016919075627119447 -8680941182369489621->1453154835024881592 2393575473155224107 chip.bam2ta_ctl 4447097353305146661 TAG-ALIGN 2393575473155224107->4447097353305146661 4447097353305146661->6218728881336920546 9171791009241764068 Filt/deduped BAM 9171791009241764068->2393575473155224107 9171791009241764068->1453154835024881592 1693593575778905689 chip.bam2ta_ctl 6232077383623319822 TAG-ALIGN 1693593575778905689->6232077383623319822 6232077383623319822->6218728881336920546 -5306315136723695590 Filt/deduped BAM -5306315136723695590->1693593575778905689 -5306315136723695590->1453154835024881592 3824746266830125575 chip.bam2ta_ctl -8691408625519043636 TAG-ALIGN 3824746266830125575->-8691408625519043636 -8691408625519043636->6218728881336920546 -3989218638851231847 Filt/deduped BAM -3989218638851231847->3824746266830125575 -3989218638851231847->1453154835024881592 1608354994306551131 chip.bam2ta_ctl -2891945813454318415 TAG-ALIGN 1608354994306551131->-2891945813454318415 -2891945813454318415->6218728881336920546 7663842908723590351 Filt/deduped BAM 7663842908723590351->1608354994306551131 7663842908723590351->1453154835024881592 5275961632037511281 chip.bam2ta_ctl -3706980421694605538 TAG-ALIGN 5275961632037511281->-3706980421694605538 -3706980421694605538->6218728881336920546 7674518124518191991 Filt/deduped BAM 7674518124518191991->5275961632037511281 7674518124518191991->1453154835024881592 -1960439619007555384 chip.bam2ta_ctl -5813759363998021068 TAG-ALIGN -1960439619007555384->-5813759363998021068 -5813759363998021068->6218728881336920546 2268433056147659209 Filt/deduped BAM 2268433056147659209->-1960439619007555384 2268433056147659209->1453154835024881592 -7271834030324415860 chip.bam2ta_ctl -7644681081095100709 TAG-ALIGN -7271834030324415860->-7644681081095100709 -7644681081095100709->6218728881336920546 9032832071845471003 Filt/deduped BAM 9032832071845471003->-7271834030324415860 9032832071845471003->1453154835024881592 715109714968751828 chip.bam2ta_ctl -1003661959329557958 TAG-ALIGN 715109714968751828->-1003661959329557958 -1003661959329557958->6218728881336920546 1085880855349115385 Filt/deduped BAM 1085880855349115385->715109714968751828 1085880855349115385->1453154835024881592 -5739445733633410538 chip.bam2ta_ctl -5930320849228607888 TAG-ALIGN -5739445733633410538->-5930320849228607888 -5930320849228607888->6218728881336920546 8705832298518059618 Filt/deduped BAM 8705832298518059618->-5739445733633410538 8705832298518059618->1453154835024881592 -7219306529187868329 chip.bam2ta_ctl -2829521227339833348 TAG-ALIGN -7219306529187868329->-2829521227339833348 -2829521227339833348->6218728881336920546 3511469405935714882 Filt/deduped BAM 3511469405935714882->-7219306529187868329 3511469405935714882->1453154835024881592 1792195960983230871 chip.bam2ta_ctl -4345634006064337855 TAG-ALIGN 1792195960983230871->-4345634006064337855 -4345634006064337855->6218728881336920546 -2837332833425516366 Filt/deduped BAM -2837332833425516366->1792195960983230871 -2837332833425516366->1453154835024881592 -6975200854693892371 IDR Plot ppr 1078312666653883027->-6975200854693892371 7401022881751727434 IDR Peak ppr 1078312666653883027->7401022881751727434 7401022881751727434->3260430041806885781 -2846571350584411159 IDR Plot rep1_vs_rep2 7671238408680857257->-2846571350584411159 4510387126240646496 IDR NPeak rep1_vs_rep2 7671238408680857257->4510387126240646496 4510387126240646496->3260430041806885781 236020575676885649 Overlap Peak rep1_vs_rep2 7773724252475887396->236020575676885649 236020575676885649->9073162241031675784 7916641478265573092 Overlap Peak optimal 9073162241031675784->7916641478265573092 -4793833913867582010 Overlap reproducibility 9073162241031675784->-4793833913867582010 5114352417664760131 IDR Peak optimal 3260430041806885781->5114352417664760131 -21223781539165556 IDR reproducibility 3260430041806885781->-21223781539165556 -4227934956859612431 Overlap Peak ppr -879740127310100761->-4227934956859612431 -4227934956859612431->9073162241031675784 4849042484502273808 JSD Plot 1453154835024881592->4849042484502273808

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/9bba4021-eb78-4234-b89e-a69b39ba876b/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.477M.pval.signal.bigwig?Expires=1601333599&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=I3sxP6f%2FgYOFBl%2B2GsUxpuBGGLrhMEJZOcCDpTDWAmEpf6%2F6NCsYpQTrrtX2OGAqFpEwgQwgu%2BHlmbBcT1%2FEu2A%2FgUueTH5gnp9%2BoNaO1odZMpahckTqThDH8B66tTNw079uyvGYo1Ss2xyHjXnIDD%2BrGwLIZW8AErUpNsg1c86Hp0zPzmvY9PEMORYGqAh59X2%2BH0b5MEHUeM7LDPw5oud68zFGTm%2BH2HUmJWj0Xo7hX%2FjA4qsg%2FZJtoNQD%2FB6ou8Tb5EkiiqDx2QOwlItjxKHtFML5M6ifdIrFmlHw5Jd%2FEvUkTfhgC5r9XZ7UGOdlCyUc7XhIBFxCyrdLTOQM8g%3D%3D"
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