File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF223ZOA.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF223ZOA.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF223ZOA.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF223ZOA.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF223ZOA.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF689RWF.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF689RWF.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF689RWF.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF689RWF.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF689RWF.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.864M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.864M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.864M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.864M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.864M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.864M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.864M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.864M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.864M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.864M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.864M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.864M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF223ZOA.crop_101-2bp.nodup.pr1_x_ctl.pooled.303M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF223ZOA.crop_101-2bp.nodup.pr1_x_ctl.pooled.303M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF223ZOA.crop_101-2bp.nodup.pr1_x_ctl.pooled.303M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF223ZOA.crop_101-2bp.nodup.pr1_x_ctl.pooled.303M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF223ZOA.crop_101-2bp.nodup.pr2_x_ctl.pooled.303M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF223ZOA.crop_101-2bp.nodup.pr2_x_ctl.pooled.303M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF223ZOA.crop_101-2bp.nodup.pr2_x_ctl.pooled.303M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF223ZOA.crop_101-2bp.nodup.pr2_x_ctl.pooled.303M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF223ZOA.crop_101-2bp.nodup_x_ctl.pooled.303M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF223ZOA.crop_101-2bp.nodup_x_ctl.pooled.303M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF223ZOA.crop_101-2bp.nodup_x_ctl.pooled.303M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF223ZOA.crop_101-2bp.nodup_x_ctl.pooled.303M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF689RWF.crop_101-2bp.nodup.pr1_x_ctl.pooled.560M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF689RWF.crop_101-2bp.nodup.pr1_x_ctl.pooled.560M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF689RWF.crop_101-2bp.nodup.pr1_x_ctl.pooled.560M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF689RWF.crop_101-2bp.nodup.pr1_x_ctl.pooled.560M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF689RWF.crop_101-2bp.nodup.pr2_x_ctl.pooled.560M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF689RWF.crop_101-2bp.nodup.pr2_x_ctl.pooled.560M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF689RWF.crop_101-2bp.nodup.pr2_x_ctl.pooled.560M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF689RWF.crop_101-2bp.nodup.pr2_x_ctl.pooled.560M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF689RWF.crop_101-2bp.nodup_x_ctl.pooled.560M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF689RWF.crop_101-2bp.nodup_x_ctl.pooled.560M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF689RWF.crop_101-2bp.nodup_x_ctl.pooled.560M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF689RWF.crop_101-2bp.nodup_x_ctl.pooled.560M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.864M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.864M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.864M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF223ZOA.crop_101-2bp.nodup.pr1_x_ctl.pooled.303M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF223ZOA.crop_101-2bp.nodup.pr2_x_ctl.pooled.303M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF223ZOA.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF223ZOA.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF223ZOA.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF223ZOA.crop_101-2bp.nodup_x_ctl.pooled.303M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF223ZOA.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF223ZOA.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF223ZOA.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF689RWF.crop_101-2bp.nodup.pr1_x_ctl.pooled.560M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF689RWF.crop_101-2bp.nodup.pr2_x_ctl.pooled.560M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF689RWF.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF689RWF.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF689RWF.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF689RWF.crop_101-2bp.nodup_x_ctl.pooled.560M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF689RWF.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF689RWF.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF689RWF.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF223ZOA.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.864M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.864M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF223ZOA.crop_101-2bp.nodup_x_ctl.pooled.303M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF223ZOA.crop_101-2bp.nodup_x_ctl.pooled.303M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF689RWF.crop_101-2bp.nodup_x_ctl.pooled.560M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF689RWF.crop_101-2bp.nodup_x_ctl.pooled.560M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -3380466584941571729 chip.macs2_signal_track_pooled 82469523284511026 BW FC -3380466584941571729->82469523284511026 3316635914382652427 BW p-val -3380466584941571729->3316635914382652427 -4694909028918095866 chip.call_peak_pooled -3589095335144124091 Peak (bfilt) -4694909028918095866->-3589095335144124091 5452544408578465873 Peak -4694909028918095866->5452544408578465873 2051151005851041820 chip.idr_ppr 5452544408578465873->2051151005851041820 5267199437191366472 chip.idr 5452544408578465873->5267199437191366472 3114398043488094502 chip.overlap 5452544408578465873->3114398043488094502 8322767204557364494 chip.overlap_ppr 5452544408578465873->8322767204557364494 -8448943945280046046 chip.pool_ta -6999775862834338739 TAG-ALIGN -8448943945280046046->-6999775862834338739 -6999775862834338739->-3380466584941571729 -6999775862834338739->-4694909028918095866 -6999775862834338739->2051151005851041820 -6999775862834338739->5267199437191366472 -6999775862834338739->3114398043488094502 -6999775862834338739->8322767204557364494 -985857024161360002 chip.call_peak -8842372239951062191 Peak (bfilt) -985857024161360002->-8842372239951062191 56245654489351001 Peak -985857024161360002->56245654489351001 56245654489351001->5267199437191366472 56245654489351001->3114398043488094502 5156155438760987696 chip.reproducibility_overlap 56245654489351001->5156155438760987696 8194799780913219952 chip.reproducibility_idr 56245654489351001->8194799780913219952 118024774742406597 chip.bam2ta 1309016512109951022 TAG-ALIGN 118024774742406597->1309016512109951022 1309016512109951022->-8448943945280046046 1309016512109951022->-985857024161360002 -727715147228017609 chip.macs2_signal_track 1309016512109951022->-727715147228017609 1309016512109951022->2051151005851041820 1309016512109951022->5156155438760987696 1309016512109951022->8194799780913219952 1309016512109951022->8322767204557364494 8288651649615816066 chip.filter 5131442506268188333 SAMstats QC 8288651649615816066->5131442506268188333 -8375264993546755848 Filt/deduped BAM 8288651649615816066->-8375264993546755848 -2910852192230434576 LibCmplx QC 8288651649615816066->-2910852192230434576 -8375264993546755848->118024774742406597 -969032981127973538 chip.jsd -8375264993546755848->-969032981127973538 5354182377614607610 chip.align -4914936910993686418 SAMstats QC 5354182377614607610->-4914936910993686418 5693201236233133754 BAM 5354182377614607610->5693201236233133754 5693201236233133754->8288651649615816066 1730514803134647053 chip.xcor -2078216347455461059 XCOR Plot 1730514803134647053->-2078216347455461059 -4288742828098788324 BW FC -727715147228017609->-4288742828098788324 7232243696888650994 BW p-val -727715147228017609->7232243696888650994 953734330134727812 FASTQ R1 (1) 953734330134727812->5354182377614607610 953734330134727812->1730514803134647053 8357763936426159745 FASTQ R2 (1) 8357763936426159745->5354182377614607610 -7825777388174911333 chip.call_peak 3423390294310767385 Peak (bfilt) -7825777388174911333->3423390294310767385 -7891627498851898302 Peak -7825777388174911333->-7891627498851898302 -7891627498851898302->5267199437191366472 -7891627498851898302->3114398043488094502 -7891627498851898302->5156155438760987696 -7891627498851898302->8194799780913219952 760968212000973371 chip.bam2ta -7252318474909400428 TAG-ALIGN 760968212000973371->-7252318474909400428 -7252318474909400428->-8448943945280046046 -7252318474909400428->-7825777388174911333 -5473959760833974169 chip.macs2_signal_track -7252318474909400428->-5473959760833974169 -7252318474909400428->2051151005851041820 -7252318474909400428->5156155438760987696 -7252318474909400428->8194799780913219952 -7252318474909400428->8322767204557364494 5004968105442348631 chip.filter -7761796778762420249 SAMstats QC 5004968105442348631->-7761796778762420249 7983041225240192987 Filt/deduped BAM 5004968105442348631->7983041225240192987 1034971866367329668 LibCmplx QC 5004968105442348631->1034971866367329668 7983041225240192987->760968212000973371 7983041225240192987->-969032981127973538 1890464293723901393 chip.align 4880567743888299402 SAMstats QC 1890464293723901393->4880567743888299402 -3962455660297083095 BAM 1890464293723901393->-3962455660297083095 -3962455660297083095->5004968105442348631 -4208375453784362769 chip.xcor 2745092464129415642 XCOR Plot -4208375453784362769->2745092464129415642 8674582315682545538 BW FC -5473959760833974169->8674582315682545538 534915644499281705 BW p-val -5473959760833974169->534915644499281705 -6501332320095859620 FASTQ R1 (1) -6501332320095859620->1890464293723901393 -6501332320095859620->-4208375453784362769 6467204114596781463 FASTQ R2 (1) 6467204114596781463->1890464293723901393 919973481073982942 chip.pool_ta_ctl 7393898909100766330 TAG-ALIGN 919973481073982942->7393898909100766330 7393898909100766330->-3380466584941571729 7393898909100766330->-4694909028918095866 7393898909100766330->-985857024161360002 7393898909100766330->-727715147228017609 7393898909100766330->-7825777388174911333 7393898909100766330->-5473959760833974169 7393898909100766330->2051151005851041820 7393898909100766330->5156155438760987696 7393898909100766330->8194799780913219952 7393898909100766330->8322767204557364494 -2188355903030535889 chip.bam2ta_ctl 8769865855056389585 TAG-ALIGN -2188355903030535889->8769865855056389585 8769865855056389585->919973481073982942 -4085689557006314275 Filt/deduped BAM -4085689557006314275->-2188355903030535889 -4085689557006314275->-969032981127973538 -613201955409381050 chip.bam2ta_ctl 4757341353655354364 TAG-ALIGN -613201955409381050->4757341353655354364 4757341353655354364->919973481073982942 6380181241168265796 Filt/deduped BAM 6380181241168265796->-613201955409381050 6380181241168265796->-969032981127973538 5683342176249501963 chip.bam2ta_ctl -8341194198675110324 TAG-ALIGN 5683342176249501963->-8341194198675110324 -8341194198675110324->919973481073982942 -8040436466194733436 Filt/deduped BAM -8040436466194733436->5683342176249501963 -8040436466194733436->-969032981127973538 8779077576726939524 chip.bam2ta_ctl 7360698832422564510 TAG-ALIGN 8779077576726939524->7360698832422564510 7360698832422564510->919973481073982942 8666716267032160242 Filt/deduped BAM 8666716267032160242->8779077576726939524 8666716267032160242->-969032981127973538 4188687569883294026 chip.bam2ta_ctl 4443635587530868598 TAG-ALIGN 4188687569883294026->4443635587530868598 4443635587530868598->919973481073982942 4151882185981249061 Filt/deduped BAM 4151882185981249061->4188687569883294026 4151882185981249061->-969032981127973538 -748313379409808430 chip.bam2ta_ctl -5035810565523347857 TAG-ALIGN -748313379409808430->-5035810565523347857 -5035810565523347857->919973481073982942 6438392196831703637 Filt/deduped BAM 6438392196831703637->-748313379409808430 6438392196831703637->-969032981127973538 -4642339665362259675 chip.bam2ta_ctl -1210198296901063603 TAG-ALIGN -4642339665362259675->-1210198296901063603 -1210198296901063603->919973481073982942 1709884933227498421 Filt/deduped BAM 1709884933227498421->-4642339665362259675 1709884933227498421->-969032981127973538 1763254110705246512 chip.bam2ta_ctl 350712306208852845 TAG-ALIGN 1763254110705246512->350712306208852845 350712306208852845->919973481073982942 8350324059724076495 Filt/deduped BAM 8350324059724076495->1763254110705246512 8350324059724076495->-969032981127973538 8056902193564591315 chip.bam2ta_ctl -6942263070108054513 TAG-ALIGN 8056902193564591315->-6942263070108054513 -6942263070108054513->919973481073982942 6718379639008293515 Filt/deduped BAM 6718379639008293515->8056902193564591315 6718379639008293515->-969032981127973538 -7671007256565923938 chip.bam2ta_ctl -1330650970207740933 TAG-ALIGN -7671007256565923938->-1330650970207740933 -1330650970207740933->919973481073982942 -8594378819816279335 Filt/deduped BAM -8594378819816279335->-7671007256565923938 -8594378819816279335->-969032981127973538 2066509973976743063 chip.bam2ta_ctl 1720096630381374970 TAG-ALIGN 2066509973976743063->1720096630381374970 1720096630381374970->919973481073982942 -6006055606347778994 Filt/deduped BAM -6006055606347778994->2066509973976743063 -6006055606347778994->-969032981127973538 2076610123035676338 chip.bam2ta_ctl -7506589659594293294 TAG-ALIGN 2076610123035676338->-7506589659594293294 -7506589659594293294->919973481073982942 -3494631720439931912 Filt/deduped BAM -3494631720439931912->2076610123035676338 -3494631720439931912->-969032981127973538 2522053769877242753 chip.bam2ta_ctl -826886297176693971 TAG-ALIGN 2522053769877242753->-826886297176693971 -826886297176693971->919973481073982942 -3801211483595830005 Filt/deduped BAM -3801211483595830005->2522053769877242753 -3801211483595830005->-969032981127973538 1027175560212197167 chip.bam2ta_ctl 5640031916361245773 TAG-ALIGN 1027175560212197167->5640031916361245773 5640031916361245773->919973481073982942 7911863551568194634 Filt/deduped BAM 7911863551568194634->1027175560212197167 7911863551568194634->-969032981127973538 -3086948285615511861 chip.bam2ta_ctl -7866529839064463625 TAG-ALIGN -3086948285615511861->-7866529839064463625 -7866529839064463625->919973481073982942 -4481785651923516171 Filt/deduped BAM -4481785651923516171->-3086948285615511861 -4481785651923516171->-969032981127973538 -9211562102231483901 chip.bam2ta_ctl -2994201166462825375 TAG-ALIGN -9211562102231483901->-2994201166462825375 -2994201166462825375->919973481073982942 3500113962757437988 Filt/deduped BAM 3500113962757437988->-9211562102231483901 3500113962757437988->-969032981127973538 -8593952677013235968 chip.bam2ta_ctl 4085522962969763095 TAG-ALIGN -8593952677013235968->4085522962969763095 4085522962969763095->919973481073982942 -5268510512063889476 Filt/deduped BAM -5268510512063889476->-8593952677013235968 -5268510512063889476->-969032981127973538 9025628264486111443 chip.bam2ta_ctl 4190436682538998315 TAG-ALIGN 9025628264486111443->4190436682538998315 4190436682538998315->919973481073982942 -8222583739361243372 Filt/deduped BAM -8222583739361243372->9025628264486111443 -8222583739361243372->-969032981127973538 5737604713516645235 chip.bam2ta_ctl -6314551904719752582 TAG-ALIGN 5737604713516645235->-6314551904719752582 -6314551904719752582->919973481073982942 1924579339722646138 Filt/deduped BAM 1924579339722646138->5737604713516645235 1924579339722646138->-969032981127973538 -8524271008911867346 chip.bam2ta_ctl -5633049650685303280 TAG-ALIGN -8524271008911867346->-5633049650685303280 -5633049650685303280->919973481073982942 8289151754736646286 Filt/deduped BAM 8289151754736646286->-8524271008911867346 8289151754736646286->-969032981127973538 4313939164673630126 chip.bam2ta_ctl -8571634773248404604 TAG-ALIGN 4313939164673630126->-8571634773248404604 -8571634773248404604->919973481073982942 -887612370579933641 Filt/deduped BAM -887612370579933641->4313939164673630126 -887612370579933641->-969032981127973538 6286950068830424971 chip.bam2ta_ctl -1330743796780429589 TAG-ALIGN 6286950068830424971->-1330743796780429589 -1330743796780429589->919973481073982942 4384776113406962896 Filt/deduped BAM 4384776113406962896->6286950068830424971 4384776113406962896->-969032981127973538 6685340381919563406 chip.bam2ta_ctl -6082180238781698725 TAG-ALIGN 6685340381919563406->-6082180238781698725 -6082180238781698725->919973481073982942 -1549661059134163036 Filt/deduped BAM -1549661059134163036->6685340381919563406 -1549661059134163036->-969032981127973538 3697798515626461642 chip.bam2ta_ctl 7525371946716502405 TAG-ALIGN 3697798515626461642->7525371946716502405 7525371946716502405->919973481073982942 -5145163264941671943 Filt/deduped BAM -5145163264941671943->3697798515626461642 -5145163264941671943->-969032981127973538 -2164166710254172682 IDR Plot ppr 2051151005851041820->-2164166710254172682 -7553358270834025636 IDR Peak ppr 2051151005851041820->-7553358270834025636 -7553358270834025636->8194799780913219952 -5459254269062043846 IDR Plot rep1_vs_rep2 5267199437191366472->-5459254269062043846 -3363385763691841943 IDR NPeak rep1_vs_rep2 5267199437191366472->-3363385763691841943 -3363385763691841943->8194799780913219952 4768448567789345359 Overlap Peak rep1_vs_rep2 3114398043488094502->4768448567789345359 4768448567789345359->5156155438760987696 280913810956550182 Overlap Peak optimal 5156155438760987696->280913810956550182 -8013475847412573456 Overlap reproducibility 5156155438760987696->-8013475847412573456 -6657140152896744833 IDR Peak optimal 8194799780913219952->-6657140152896744833 -3808455655807026310 IDR reproducibility 8194799780913219952->-3808455655807026310 779261454690517298 Overlap Peak ppr 8322767204557364494->779261454690517298 779261454690517298->5156155438760987696 -6767478660743518468 JSD Plot -969032981127973538->-6767478660743518468

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/5accd8bb-6a89-438b-a9b9-68100558ffec/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.864M.pval.signal.bigwig?Expires=1601337933&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=SmhO7JSO5ZrgTWHPR%2FXRyuLFRQp%2BAyH089lEkMx7nTz9EFHHvBiEw%2F2K3%2BgnQ0nzeZTRd1Sh2KfG57aB34yw3I5kkXbeNeHwxbpbkmnbNGsfmkpm1yE6hi154wk8Im6ntNAgHkgrwKjqjYhcDWqoDZXtiQvjWk7miI1vrk2lto6C9UYejiOSdZK1mwLBPCwIaqbTu1ryu9rGXQ1WtVYnb4MnQJneEh6A5b3MVUWthqugnCEcTvRWC0xyGgw0JwTA7HYdVstjK52QLeUlulpecAWRD2uqNP0S8HHdOYKdUnrheRmMdJUGMj1L1IK%2B1tPoDAkN9zmJeY9e3J6ahlLAXw%3D%3D"
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