File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF957TBU.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF957TBU.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF957TBU.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF957TBU.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF957TBU.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF371HHV.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF371HHV.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF371HHV.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF371HHV.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF371HHV.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.578M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.578M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.578M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.578M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.578M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.578M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.578M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.578M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.578M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.578M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.578M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.578M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF957TBU.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF957TBU.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF957TBU.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF957TBU.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF957TBU.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF957TBU.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF957TBU.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF957TBU.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF371HHV.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF371HHV.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF371HHV.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF371HHV.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF371HHV.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF371HHV.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF371HHV.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF371HHV.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.578M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.578M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.578M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF957TBU.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF957TBU.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF957TBU.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF957TBU.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF957TBU.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF957TBU.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF957TBU.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF957TBU.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF371HHV.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF371HHV.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF371HHV.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF371HHV.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF371HHV.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF371HHV.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF371HHV.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF371HHV.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF957TBU.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.578M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.578M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -3794060988998662400 chip.macs2_signal_track_pooled -4236099170328376936 BW FC -3794060988998662400->-4236099170328376936 7831483099998923060 BW p-val -3794060988998662400->7831483099998923060 1471190066854824297 chip.call_peak_pooled -6521741716414052318 Peak (bfilt) 1471190066854824297->-6521741716414052318 -2950478986858830319 Peak 1471190066854824297->-2950478986858830319 7487229216865756125 chip.idr_ppr -2950478986858830319->7487229216865756125 5396738939895283722 chip.idr -2950478986858830319->5396738939895283722 -8849784945019981647 chip.overlap -2950478986858830319->-8849784945019981647 -2354066610889940599 chip.overlap_ppr -2950478986858830319->-2354066610889940599 1957944820207307198 chip.pool_ta -1857988833779047339 TAG-ALIGN 1957944820207307198->-1857988833779047339 -1857988833779047339->-3794060988998662400 -1857988833779047339->1471190066854824297 -1857988833779047339->7487229216865756125 -1857988833779047339->5396738939895283722 -1857988833779047339->-8849784945019981647 -1857988833779047339->-2354066610889940599 7522707251641260975 chip.call_peak -5813217975293561107 Peak (bfilt) 7522707251641260975->-5813217975293561107 1179381643308347405 Peak 7522707251641260975->1179381643308347405 1179381643308347405->5396738939895283722 1179381643308347405->-8849784945019981647 5745992470151035971 chip.reproducibility_overlap 1179381643308347405->5745992470151035971 6117976937308266381 chip.reproducibility_idr 1179381643308347405->6117976937308266381 -3804430849123940518 chip.bam2ta 701432546903301877 TAG-ALIGN -3804430849123940518->701432546903301877 701432546903301877->1957944820207307198 701432546903301877->7522707251641260975 -6184690978808560721 chip.macs2_signal_track 701432546903301877->-6184690978808560721 701432546903301877->7487229216865756125 701432546903301877->5745992470151035971 701432546903301877->6117976937308266381 701432546903301877->-2354066610889940599 -3433997385612665884 chip.filter 9119543192354557129 SAMstats QC -3433997385612665884->9119543192354557129 5618660065597146937 Filt/deduped BAM -3433997385612665884->5618660065597146937 6652586969518548447 LibCmplx QC -3433997385612665884->6652586969518548447 5618660065597146937->-3804430849123940518 2744366243923105709 chip.jsd 5618660065597146937->2744366243923105709 -3569226183054237952 chip.align 7354429401826339980 SAMstats QC -3569226183054237952->7354429401826339980 -3615683752332584929 BAM -3569226183054237952->-3615683752332584929 -3615683752332584929->-3433997385612665884 6554716134238483381 chip.xcor 1910644782905859670 XCOR Plot 6554716134238483381->1910644782905859670 9194478702577013118 BW FC -6184690978808560721->9194478702577013118 1364092675042250161 BW p-val -6184690978808560721->1364092675042250161 5553929090805802695 FASTQ R1 (1) 5553929090805802695->-3569226183054237952 5553929090805802695->6554716134238483381 -2843790019272892875 FASTQ R2 (1) -2843790019272892875->-3569226183054237952 7678578692103052362 chip.call_peak 6916412723747204997 Peak (bfilt) 7678578692103052362->6916412723747204997 -1090153648319102987 Peak 7678578692103052362->-1090153648319102987 -1090153648319102987->5396738939895283722 -1090153648319102987->-8849784945019981647 -1090153648319102987->5745992470151035971 -1090153648319102987->6117976937308266381 -7543332828449579258 chip.bam2ta -4588294594250141925 TAG-ALIGN -7543332828449579258->-4588294594250141925 -4588294594250141925->1957944820207307198 -4588294594250141925->7678578692103052362 -3395191337137568828 chip.macs2_signal_track -4588294594250141925->-3395191337137568828 -4588294594250141925->7487229216865756125 -4588294594250141925->5745992470151035971 -4588294594250141925->6117976937308266381 -4588294594250141925->-2354066610889940599 -6618790477621390810 chip.filter -2155971045946799275 SAMstats QC -6618790477621390810->-2155971045946799275 7208497617201249420 Filt/deduped BAM -6618790477621390810->7208497617201249420 -6769289022535560633 LibCmplx QC -6618790477621390810->-6769289022535560633 7208497617201249420->-7543332828449579258 7208497617201249420->2744366243923105709 3251101340644202771 chip.align -3808652045944492548 SAMstats QC 3251101340644202771->-3808652045944492548 -5859232165694880374 BAM 3251101340644202771->-5859232165694880374 -5859232165694880374->-6618790477621390810 5951916996786477141 chip.xcor 1905556715370082774 XCOR Plot 5951916996786477141->1905556715370082774 -4947591714497650500 BW FC -3395191337137568828->-4947591714497650500 6134298756387240307 BW p-val -3395191337137568828->6134298756387240307 -5201526222637037660 FASTQ R1 (1) -5201526222637037660->3251101340644202771 -5201526222637037660->5951916996786477141 -3180496287628921042 FASTQ R2 (1) -3180496287628921042->3251101340644202771 -9126178985307089591 chip.pool_ta_ctl -380460154811142722 TAG-ALIGN -9126178985307089591->-380460154811142722 -380460154811142722->-3794060988998662400 -380460154811142722->1471190066854824297 -380460154811142722->7522707251641260975 -380460154811142722->-6184690978808560721 -380460154811142722->7678578692103052362 -380460154811142722->-3395191337137568828 -380460154811142722->7487229216865756125 -380460154811142722->5745992470151035971 -380460154811142722->6117976937308266381 -380460154811142722->-2354066610889940599 4255437647486755783 chip.bam2ta_ctl 6867429547409194996 TAG-ALIGN 4255437647486755783->6867429547409194996 6867429547409194996->-9126178985307089591 -1595127847345569610 Filt/deduped BAM -1595127847345569610->4255437647486755783 -1595127847345569610->2744366243923105709 4659526026452016016 chip.bam2ta_ctl -9108432886306129596 TAG-ALIGN 4659526026452016016->-9108432886306129596 -9108432886306129596->-9126178985307089591 -4555096974686976442 Filt/deduped BAM -4555096974686976442->4659526026452016016 -4555096974686976442->2744366243923105709 1651507733498442890 chip.bam2ta_ctl -631256869754653087 TAG-ALIGN 1651507733498442890->-631256869754653087 -631256869754653087->-9126178985307089591 -6094302620527669626 Filt/deduped BAM -6094302620527669626->1651507733498442890 -6094302620527669626->2744366243923105709 -134401584803512941 chip.bam2ta_ctl -4845732202132323634 TAG-ALIGN -134401584803512941->-4845732202132323634 -4845732202132323634->-9126178985307089591 2514607289132689461 Filt/deduped BAM 2514607289132689461->-134401584803512941 2514607289132689461->2744366243923105709 4135380520574891893 chip.bam2ta_ctl -1569272668584955831 TAG-ALIGN 4135380520574891893->-1569272668584955831 -1569272668584955831->-9126178985307089591 -5548537186885383537 Filt/deduped BAM -5548537186885383537->4135380520574891893 -5548537186885383537->2744366243923105709 2275768930425986119 chip.bam2ta_ctl -21104112840471141 TAG-ALIGN 2275768930425986119->-21104112840471141 -21104112840471141->-9126178985307089591 -827860955423640524 Filt/deduped BAM -827860955423640524->2275768930425986119 -827860955423640524->2744366243923105709 8346263511677213827 chip.bam2ta_ctl -7652882592763854394 TAG-ALIGN 8346263511677213827->-7652882592763854394 -7652882592763854394->-9126178985307089591 6453958992246592934 Filt/deduped BAM 6453958992246592934->8346263511677213827 6453958992246592934->2744366243923105709 8427149369177178826 chip.bam2ta_ctl 7466930832547326541 TAG-ALIGN 8427149369177178826->7466930832547326541 7466930832547326541->-9126178985307089591 -2234918420900261227 Filt/deduped BAM -2234918420900261227->8427149369177178826 -2234918420900261227->2744366243923105709 -939698630355940406 chip.bam2ta_ctl -2127392183032897926 TAG-ALIGN -939698630355940406->-2127392183032897926 -2127392183032897926->-9126178985307089591 2516271827133708341 Filt/deduped BAM 2516271827133708341->-939698630355940406 2516271827133708341->2744366243923105709 -5319646139116782701 chip.bam2ta_ctl 8227833007572473910 TAG-ALIGN -5319646139116782701->8227833007572473910 8227833007572473910->-9126178985307089591 -5226829479837585693 Filt/deduped BAM -5226829479837585693->-5319646139116782701 -5226829479837585693->2744366243923105709 -4491081716199836569 chip.bam2ta_ctl 3944343271525245947 TAG-ALIGN -4491081716199836569->3944343271525245947 3944343271525245947->-9126178985307089591 -8585727596782034079 Filt/deduped BAM -8585727596782034079->-4491081716199836569 -8585727596782034079->2744366243923105709 6080031204896231182 chip.bam2ta_ctl -7321111859698598964 TAG-ALIGN 6080031204896231182->-7321111859698598964 -7321111859698598964->-9126178985307089591 -2292517033733819646 Filt/deduped BAM -2292517033733819646->6080031204896231182 -2292517033733819646->2744366243923105709 2992127334955536194 chip.bam2ta_ctl 8463119785118343981 TAG-ALIGN 2992127334955536194->8463119785118343981 8463119785118343981->-9126178985307089591 3977684942560476708 Filt/deduped BAM 3977684942560476708->2992127334955536194 3977684942560476708->2744366243923105709 -3184149181655610434 chip.bam2ta_ctl 4831166316214714914 TAG-ALIGN -3184149181655610434->4831166316214714914 4831166316214714914->-9126178985307089591 3224712518497312898 Filt/deduped BAM 3224712518497312898->-3184149181655610434 3224712518497312898->2744366243923105709 -1629708233060406401 chip.bam2ta_ctl -8926253442208128454 TAG-ALIGN -1629708233060406401->-8926253442208128454 -8926253442208128454->-9126178985307089591 5056321902159623118 Filt/deduped BAM 5056321902159623118->-1629708233060406401 5056321902159623118->2744366243923105709 6216920128197787547 chip.bam2ta_ctl -4694649965472427515 TAG-ALIGN 6216920128197787547->-4694649965472427515 -4694649965472427515->-9126178985307089591 -4444965866767749524 Filt/deduped BAM -4444965866767749524->6216920128197787547 -4444965866767749524->2744366243923105709 -2291325433493447733 chip.bam2ta_ctl 1032557063967542761 TAG-ALIGN -2291325433493447733->1032557063967542761 1032557063967542761->-9126178985307089591 6863131892733484749 Filt/deduped BAM 6863131892733484749->-2291325433493447733 6863131892733484749->2744366243923105709 2174866222655486955 chip.bam2ta_ctl -2649415118381282135 TAG-ALIGN 2174866222655486955->-2649415118381282135 -2649415118381282135->-9126178985307089591 4315199468692187118 Filt/deduped BAM 4315199468692187118->2174866222655486955 4315199468692187118->2744366243923105709 6599497449418085764 chip.bam2ta_ctl -8903640194664352235 TAG-ALIGN 6599497449418085764->-8903640194664352235 -8903640194664352235->-9126178985307089591 7219800418155657004 Filt/deduped BAM 7219800418155657004->6599497449418085764 7219800418155657004->2744366243923105709 -275889630265744182 chip.bam2ta_ctl 4637679177087979546 TAG-ALIGN -275889630265744182->4637679177087979546 4637679177087979546->-9126178985307089591 -4020318389497254840 Filt/deduped BAM -4020318389497254840->-275889630265744182 -4020318389497254840->2744366243923105709 3059911331360962083 chip.bam2ta_ctl -2370522593581820835 TAG-ALIGN 3059911331360962083->-2370522593581820835 -2370522593581820835->-9126178985307089591 1956114840716933085 Filt/deduped BAM 1956114840716933085->3059911331360962083 1956114840716933085->2744366243923105709 8626517377726181358 chip.bam2ta_ctl -6181830425046388684 TAG-ALIGN 8626517377726181358->-6181830425046388684 -6181830425046388684->-9126178985307089591 2842844715346740116 Filt/deduped BAM 2842844715346740116->8626517377726181358 2842844715346740116->2744366243923105709 -4159357000990344226 chip.bam2ta_ctl 4553261601381508439 TAG-ALIGN -4159357000990344226->4553261601381508439 4553261601381508439->-9126178985307089591 2052389938950587776 Filt/deduped BAM 2052389938950587776->-4159357000990344226 2052389938950587776->2744366243923105709 -2250476369695524814 chip.bam2ta_ctl 7582358200986529782 TAG-ALIGN -2250476369695524814->7582358200986529782 7582358200986529782->-9126178985307089591 3137931630025247360 Filt/deduped BAM 3137931630025247360->-2250476369695524814 3137931630025247360->2744366243923105709 5531391052777842261 IDR Plot ppr 7487229216865756125->5531391052777842261 641502723957344462 IDR Peak ppr 7487229216865756125->641502723957344462 641502723957344462->6117976937308266381 -2994239020579088912 IDR Plot rep1_vs_rep2 5396738939895283722->-2994239020579088912 1774887272119083208 IDR NPeak rep1_vs_rep2 5396738939895283722->1774887272119083208 1774887272119083208->6117976937308266381 2572082623897966564 Overlap Peak rep1_vs_rep2 -8849784945019981647->2572082623897966564 2572082623897966564->5745992470151035971 -5746249885045570128 Overlap Peak optimal 5745992470151035971->-5746249885045570128 4087137371445585538 Overlap reproducibility 5745992470151035971->4087137371445585538 -5266566882176758331 IDR Peak optimal 6117976937308266381->-5266566882176758331 -2599015193612988086 IDR reproducibility 6117976937308266381->-2599015193612988086 -331551904664634546 Overlap Peak ppr -2354066610889940599->-331551904664634546 -331551904664634546->5745992470151035971 9186811612377466690 JSD Plot 2744366243923105709->9186811612377466690

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser.
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.578M.pval.signal.bigwig?Expires=1601336930&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=xBEeVzAHBrCuBvsM1SA9n5335bbGW7l6iI5I6qLX6H2rRRl6%2FYR7J47RKT8K0Ki5LjPMgEarD7bzuMULvbRF1xZXq4FWZ3sPSNQX9EmSnAxHFn3TA4vdzsVj1iNSkM7hgsaX0SUI0RxM0WqplOtBjrB68k3FfJYc717uvu9FdbHVFfW3wTPQKo2jFEd9uNFk2vhH%2BdYSdPSbOCYPhgnGbKR605F3Nx3K7x%2Bkwt%2B4%2FY8nU4eEken62Gx%2BSOe7oowJOuvrZIHWPG63Q6BBxzO6CYb%2FsH6nfF%2B9TErABxG5bX4pPUCQYjG4wLViqcAVZPiXQyUNaqWJ4WwQFxl8atu7mQ%3D%3D"
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