File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF957TBU.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF957TBU.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF957TBU.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF957TBU.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF957TBU.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF371HHV.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF371HHV.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF371HHV.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF371HHV.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF371HHV.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.578M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.578M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.578M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.578M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.578M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.578M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.578M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.578M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.578M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.578M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.578M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.578M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF957TBU.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF957TBU.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF957TBU.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF957TBU.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF957TBU.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF957TBU.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF957TBU.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF957TBU.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF371HHV.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF371HHV.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF371HHV.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF371HHV.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF371HHV.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF371HHV.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF371HHV.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF371HHV.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.578M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.578M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.578M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF957TBU.crop_101-2bp.nodup.pr1_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF957TBU.crop_101-2bp.nodup.pr2_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF957TBU.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF957TBU.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF957TBU.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF957TBU.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF957TBU.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF957TBU.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF371HHV.crop_101-2bp.nodup.pr1_x_ctl.pooled.296M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF371HHV.crop_101-2bp.nodup.pr2_x_ctl.pooled.296M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF371HHV.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF371HHV.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF371HHV.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF371HHV.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF371HHV.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF371HHV.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF957TBU.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/02be14fa-5108-4774-8c69-233add62b716/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.578M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.578M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF957TBU.crop_101-2bp.nodup_x_ctl.pooled.282M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -2792955144572369152 chip.macs2_signal_track_pooled -3677079607487339646 BW FC -2792955144572369152->-3677079607487339646 -4373407448477479329 BW p-val -2792955144572369152->-4373407448477479329 1260975174967275598 chip.call_peak_pooled 1979054978125374465 Peak (bfilt) 1260975174967275598->1979054978125374465 6767115452098921647 Peak 1260975174967275598->6767115452098921647 4089520856693655163 chip.idr_ppr 6767115452098921647->4089520856693655163 4058317788848309519 chip.idr 6767115452098921647->4058317788848309519 7628547154074266465 chip.overlap 6767115452098921647->7628547154074266465 -1721507811772137553 chip.overlap_ppr 6767115452098921647->-1721507811772137553 -6899004065920250747 chip.pool_ta 2400986791497754915 TAG-ALIGN -6899004065920250747->2400986791497754915 2400986791497754915->-2792955144572369152 2400986791497754915->1260975174967275598 2400986791497754915->4089520856693655163 2400986791497754915->4058317788848309519 2400986791497754915->7628547154074266465 2400986791497754915->-1721507811772137553 6902811552649455383 chip.call_peak 2238540577296645093 Peak (bfilt) 6902811552649455383->2238540577296645093 5783297256648904733 Peak 6902811552649455383->5783297256648904733 5783297256648904733->4058317788848309519 5783297256648904733->7628547154074266465 -6099686097658023943 chip.reproducibility_overlap 5783297256648904733->-6099686097658023943 9170692223609841565 chip.reproducibility_idr 5783297256648904733->9170692223609841565 2193825680654855276 chip.bam2ta -5381881582949000910 TAG-ALIGN 2193825680654855276->-5381881582949000910 -5381881582949000910->-6899004065920250747 -5381881582949000910->6902811552649455383 3903820563204071124 chip.macs2_signal_track -5381881582949000910->3903820563204071124 -5381881582949000910->4089520856693655163 -5381881582949000910->-6099686097658023943 -5381881582949000910->9170692223609841565 -5381881582949000910->-1721507811772137553 -7380491617163552038 chip.filter 4352850522059782512 SAMstats QC -7380491617163552038->4352850522059782512 7943483557227706351 Filt/deduped BAM -7380491617163552038->7943483557227706351 8370438716566806509 LibCmplx QC -7380491617163552038->8370438716566806509 7943483557227706351->2193825680654855276 -7755100356779194504 chip.jsd 7943483557227706351->-7755100356779194504 -1190412635918766008 chip.align 3443335530424059256 SAMstats QC -1190412635918766008->3443335530424059256 -4391467721361760878 BAM -1190412635918766008->-4391467721361760878 -4391467721361760878->-7380491617163552038 5103348762174180602 chip.xcor 1607227326265870454 XCOR Plot 5103348762174180602->1607227326265870454 2618029139903016705 BW FC 3903820563204071124->2618029139903016705 -2916176701700660663 BW p-val 3903820563204071124->-2916176701700660663 3310706367022185149 FASTQ R1 (1) 3310706367022185149->-1190412635918766008 3310706367022185149->5103348762174180602 1564306038423832176 FASTQ R2 (1) 1564306038423832176->-1190412635918766008 8716502896469676040 chip.call_peak -8936943342875107157 Peak (bfilt) 8716502896469676040->-8936943342875107157 8744856491433928396 Peak 8716502896469676040->8744856491433928396 8744856491433928396->4058317788848309519 8744856491433928396->7628547154074266465 8744856491433928396->-6099686097658023943 8744856491433928396->9170692223609841565 -5394289629612578385 chip.bam2ta -5550272946660558805 TAG-ALIGN -5394289629612578385->-5550272946660558805 -5550272946660558805->-6899004065920250747 -5550272946660558805->8716502896469676040 7542157502706167076 chip.macs2_signal_track -5550272946660558805->7542157502706167076 -5550272946660558805->4089520856693655163 -5550272946660558805->-6099686097658023943 -5550272946660558805->9170692223609841565 -5550272946660558805->-1721507811772137553 -3944867841703977776 chip.filter 1128921028434000408 SAMstats QC -3944867841703977776->1128921028434000408 -4951825271328527812 Filt/deduped BAM -3944867841703977776->-4951825271328527812 -1941780577888863507 LibCmplx QC -3944867841703977776->-1941780577888863507 -4951825271328527812->-5394289629612578385 -4951825271328527812->-7755100356779194504 -6006228762268611714 chip.align 1894606330218878616 SAMstats QC -6006228762268611714->1894606330218878616 3138341210995673143 BAM -6006228762268611714->3138341210995673143 3138341210995673143->-3944867841703977776 -1831839062761707980 chip.xcor -4160076317504753083 XCOR Plot -1831839062761707980->-4160076317504753083 6243226521405835301 BW FC 7542157502706167076->6243226521405835301 -5156174371064562021 BW p-val 7542157502706167076->-5156174371064562021 5853978864255578291 FASTQ R1 (1) 5853978864255578291->-6006228762268611714 5853978864255578291->-1831839062761707980 -8190830445593226909 FASTQ R2 (1) -8190830445593226909->-6006228762268611714 1298213004479904181 chip.pool_ta_ctl 3833457953356919013 TAG-ALIGN 1298213004479904181->3833457953356919013 3833457953356919013->-2792955144572369152 3833457953356919013->1260975174967275598 3833457953356919013->6902811552649455383 3833457953356919013->3903820563204071124 3833457953356919013->8716502896469676040 3833457953356919013->7542157502706167076 3833457953356919013->4089520856693655163 3833457953356919013->-6099686097658023943 3833457953356919013->9170692223609841565 3833457953356919013->-1721507811772137553 5390105811560572952 chip.bam2ta_ctl -2102255515009215030 TAG-ALIGN 5390105811560572952->-2102255515009215030 -2102255515009215030->1298213004479904181 -1019960351939658646 Filt/deduped BAM -1019960351939658646->5390105811560572952 -1019960351939658646->-7755100356779194504 -8610389710064272599 chip.bam2ta_ctl 7885730005734669272 TAG-ALIGN -8610389710064272599->7885730005734669272 7885730005734669272->1298213004479904181 2126066110157748402 Filt/deduped BAM 2126066110157748402->-8610389710064272599 2126066110157748402->-7755100356779194504 8576682232875060307 chip.bam2ta_ctl 489814278887818230 TAG-ALIGN 8576682232875060307->489814278887818230 489814278887818230->1298213004479904181 7040509302987917895 Filt/deduped BAM 7040509302987917895->8576682232875060307 7040509302987917895->-7755100356779194504 5011748515667847092 chip.bam2ta_ctl -481062104369164507 TAG-ALIGN 5011748515667847092->-481062104369164507 -481062104369164507->1298213004479904181 5431890946835393794 Filt/deduped BAM 5431890946835393794->5011748515667847092 5431890946835393794->-7755100356779194504 2528975472664916500 chip.bam2ta_ctl -7915248213381621812 TAG-ALIGN 2528975472664916500->-7915248213381621812 -7915248213381621812->1298213004479904181 6278399412208410820 Filt/deduped BAM 6278399412208410820->2528975472664916500 6278399412208410820->-7755100356779194504 -947817784242592862 chip.bam2ta_ctl -4007958190339071771 TAG-ALIGN -947817784242592862->-4007958190339071771 -4007958190339071771->1298213004479904181 7580294892287248934 Filt/deduped BAM 7580294892287248934->-947817784242592862 7580294892287248934->-7755100356779194504 6009383161015197916 chip.bam2ta_ctl -4248351646970690570 TAG-ALIGN 6009383161015197916->-4248351646970690570 -4248351646970690570->1298213004479904181 8523837443284714792 Filt/deduped BAM 8523837443284714792->6009383161015197916 8523837443284714792->-7755100356779194504 -7310318673823831865 chip.bam2ta_ctl -4641276469895986423 TAG-ALIGN -7310318673823831865->-4641276469895986423 -4641276469895986423->1298213004479904181 1277694967164144081 Filt/deduped BAM 1277694967164144081->-7310318673823831865 1277694967164144081->-7755100356779194504 -1767242292400995255 chip.bam2ta_ctl 7643206026587437526 TAG-ALIGN -1767242292400995255->7643206026587437526 7643206026587437526->1298213004479904181 -6573623896478871801 Filt/deduped BAM -6573623896478871801->-1767242292400995255 -6573623896478871801->-7755100356779194504 -6152804221936040791 chip.bam2ta_ctl 8509569560067447352 TAG-ALIGN -6152804221936040791->8509569560067447352 8509569560067447352->1298213004479904181 2406359703087375290 Filt/deduped BAM 2406359703087375290->-6152804221936040791 2406359703087375290->-7755100356779194504 -8209192984069532482 chip.bam2ta_ctl 2590058728197669519 TAG-ALIGN -8209192984069532482->2590058728197669519 2590058728197669519->1298213004479904181 6357592556651778337 Filt/deduped BAM 6357592556651778337->-8209192984069532482 6357592556651778337->-7755100356779194504 -4153808104504875754 chip.bam2ta_ctl -6291241762237294499 TAG-ALIGN -4153808104504875754->-6291241762237294499 -6291241762237294499->1298213004479904181 -5534280595207486384 Filt/deduped BAM -5534280595207486384->-4153808104504875754 -5534280595207486384->-7755100356779194504 -8824310282916854858 chip.bam2ta_ctl 1744126226640071521 TAG-ALIGN -8824310282916854858->1744126226640071521 1744126226640071521->1298213004479904181 6881869591242107269 Filt/deduped BAM 6881869591242107269->-8824310282916854858 6881869591242107269->-7755100356779194504 7388390942896351510 chip.bam2ta_ctl 999180973840153812 TAG-ALIGN 7388390942896351510->999180973840153812 999180973840153812->1298213004479904181 -1684179742339601127 Filt/deduped BAM -1684179742339601127->7388390942896351510 -1684179742339601127->-7755100356779194504 -7383326485200719697 chip.bam2ta_ctl -731117805253066840 TAG-ALIGN -7383326485200719697->-731117805253066840 -731117805253066840->1298213004479904181 -1749770913087111779 Filt/deduped BAM -1749770913087111779->-7383326485200719697 -1749770913087111779->-7755100356779194504 2512665946345547189 chip.bam2ta_ctl 4304322639253708601 TAG-ALIGN 2512665946345547189->4304322639253708601 4304322639253708601->1298213004479904181 2110036192837021475 Filt/deduped BAM 2110036192837021475->2512665946345547189 2110036192837021475->-7755100356779194504 -8319177106257327750 chip.bam2ta_ctl 1408874501652821531 TAG-ALIGN -8319177106257327750->1408874501652821531 1408874501652821531->1298213004479904181 3000476121776394443 Filt/deduped BAM 3000476121776394443->-8319177106257327750 3000476121776394443->-7755100356779194504 6647439190554163188 chip.bam2ta_ctl -2827915688209908796 TAG-ALIGN 6647439190554163188->-2827915688209908796 -2827915688209908796->1298213004479904181 -1144621305930640605 Filt/deduped BAM -1144621305930640605->6647439190554163188 -1144621305930640605->-7755100356779194504 1037093496771055585 chip.bam2ta_ctl -2719830572999091620 TAG-ALIGN 1037093496771055585->-2719830572999091620 -2719830572999091620->1298213004479904181 -7757074559967446301 Filt/deduped BAM -7757074559967446301->1037093496771055585 -7757074559967446301->-7755100356779194504 4440811650846712319 chip.bam2ta_ctl -872132922009817687 TAG-ALIGN 4440811650846712319->-872132922009817687 -872132922009817687->1298213004479904181 5384999207296848861 Filt/deduped BAM 5384999207296848861->4440811650846712319 5384999207296848861->-7755100356779194504 2200896214262213357 chip.bam2ta_ctl -4164034573290497368 TAG-ALIGN 2200896214262213357->-4164034573290497368 -4164034573290497368->1298213004479904181 -68227186636412411 Filt/deduped BAM -68227186636412411->2200896214262213357 -68227186636412411->-7755100356779194504 -3189161003901653887 chip.bam2ta_ctl -731382735903170055 TAG-ALIGN -3189161003901653887->-731382735903170055 -731382735903170055->1298213004479904181 2082706628943111381 Filt/deduped BAM 2082706628943111381->-3189161003901653887 2082706628943111381->-7755100356779194504 -3190658128238362377 chip.bam2ta_ctl 9105330253700468979 TAG-ALIGN -3190658128238362377->9105330253700468979 9105330253700468979->1298213004479904181 4880464353234491144 Filt/deduped BAM 4880464353234491144->-3190658128238362377 4880464353234491144->-7755100356779194504 7282933576849985158 chip.bam2ta_ctl 4291058345120985642 TAG-ALIGN 7282933576849985158->4291058345120985642 4291058345120985642->1298213004479904181 -2326561461413256423 Filt/deduped BAM -2326561461413256423->7282933576849985158 -2326561461413256423->-7755100356779194504 558780764844015326 IDR Plot ppr 4089520856693655163->558780764844015326 5409047397369311742 IDR Peak ppr 4089520856693655163->5409047397369311742 5409047397369311742->9170692223609841565 -3302492428547553770 IDR Plot rep1_vs_rep2 4058317788848309519->-3302492428547553770 -3079822945632876762 IDR NPeak rep1_vs_rep2 4058317788848309519->-3079822945632876762 -3079822945632876762->9170692223609841565 -2579816553938459813 Overlap Peak rep1_vs_rep2 7628547154074266465->-2579816553938459813 -2579816553938459813->-6099686097658023943 1532495129442487009 Overlap Peak optimal -6099686097658023943->1532495129442487009 -6134534666368469161 Overlap reproducibility -6099686097658023943->-6134534666368469161 -6562660043828209758 IDR Peak optimal 9170692223609841565->-6562660043828209758 4303249013053902474 IDR reproducibility 9170692223609841565->4303249013053902474 -9206469944078456321 Overlap Peak ppr -1721507811772137553->-9206469944078456321 -9206469944078456321->-6099686097658023943 9046856312620876081 JSD Plot -7755100356779194504->9046856312620876081

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser.
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track type=bigWig name="MACS2 fc (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF371HHV.crop_101-2bp.nodup_x_ctl.pooled.296M.fc.signal.bigwig?Expires=1601330260&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=1eQt1gSinTk02UlSxADzJAjR%2FHDdnSXwKDUZGJqk4Po7HLnT06jtxrUeLod6FB2OQchyZtQgyO3yHvOJzQLYnZf5gqSIqx%2FyDzjmvrJ7zS5vJkx7gGlxAQ4ev9CDWAf1dGXf9NZsbCoSLUOS8upaNgGsv4iODMeI%2FoZJiHsufvMinSJaaPFac8JM%2FvkFP4lbOE%2BDNdtA6c7lfYMhfsSvww5gzdqBcIqiCrYGP%2B%2B%2BdGpgwXtMsqwMO83SOj5Iu8iIRHGZOOr8sgE7mWpLk7nLhsY8CTZtgKE1MESU2miW%2BehVaXQAL1yTTxYv75%2BqvizWzjFK3q6Al7xXAwx5KjRVtA%3D%3D"
track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/2a5761b0-2321-42e6-975a-22714cfb6b63/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.578M.pval.signal.bigwig?Expires=1601330260&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=z5Q%2BdP3s8NYPA1Iz1yJHY9pK99DZ%2Bo6sL8rn9gns7rd45AuvuC%2B6gDt0a19MRpLg3FoerBqZ3NqIKPA3%2F8CtIocutc6HIjlT%2BQ23j%2BeRDpSAMWiNLYKpdkvhCmsLhQIyBrR5rLGrvGAtJSk0c6fxGau2tobjfCDSsAE0v6NmNlwxXWrWu3ULROvO3tb1LFA98sRkVAT2YZWGwk9RLZKlu8Nr5Hzugz4TokQID9TimG%2FgGdw9oWv0maS20mWAGcaFNN5lHO66nufYH6reV3o07o5fPVtQoA4n%2BEZvO8NoE6f627E90jeQAMc98EsC93SuK%2BYzHG0NzhSw2XhWVQAC4w%3D%3D"
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