File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/fb4149fa-70d6-49ad-99b5-adc87068337a/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF350INM.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/55544272-a848-479d-8122-5ca442081e22/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF031UZD.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/a10a7070-199d-46a9-86eb-c50f7d7322b1/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF713QSG.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/c4a44d6b-9471-4ee2-9b0e-6cdd4e5fc01e/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF300ATN.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/2bbc1e7f-3933-4c02-8ec9-ede594314af5/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF852BFO.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/fb4149fa-70d6-49ad-99b5-adc87068337a/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF036EBY.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/55544272-a848-479d-8122-5ca442081e22/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF009REX.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF009REX.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF009REX.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF009REX.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF009REX.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF998QDV.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF998QDV.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF998QDV.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF998QDV.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF998QDV.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF009REX.crop_101-2bp.nodup.pr1_x_ctl.pooled.355M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF009REX.crop_101-2bp.nodup.pr1_x_ctl.pooled.355M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF009REX.crop_101-2bp.nodup.pr1_x_ctl.pooled.355M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF009REX.crop_101-2bp.nodup.pr1_x_ctl.pooled.355M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF009REX.crop_101-2bp.nodup.pr2_x_ctl.pooled.355M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF009REX.crop_101-2bp.nodup.pr2_x_ctl.pooled.355M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF009REX.crop_101-2bp.nodup.pr2_x_ctl.pooled.355M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF009REX.crop_101-2bp.nodup.pr2_x_ctl.pooled.355M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF009REX.crop_101-2bp.nodup_x_ctl.pooled.355M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF009REX.crop_101-2bp.nodup_x_ctl.pooled.355M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF009REX.crop_101-2bp.nodup_x_ctl.pooled.355M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF009REX.crop_101-2bp.nodup_x_ctl.pooled.355M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF998QDV.crop_101-2bp.nodup.pr1_x_ctl.pooled.344M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF998QDV.crop_101-2bp.nodup.pr1_x_ctl.pooled.344M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF998QDV.crop_101-2bp.nodup.pr1_x_ctl.pooled.344M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF998QDV.crop_101-2bp.nodup.pr1_x_ctl.pooled.344M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF998QDV.crop_101-2bp.nodup.pr2_x_ctl.pooled.344M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF998QDV.crop_101-2bp.nodup.pr2_x_ctl.pooled.344M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF998QDV.crop_101-2bp.nodup.pr2_x_ctl.pooled.344M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF998QDV.crop_101-2bp.nodup.pr2_x_ctl.pooled.344M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF998QDV.crop_101-2bp.nodup_x_ctl.pooled.344M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF998QDV.crop_101-2bp.nodup_x_ctl.pooled.344M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF998QDV.crop_101-2bp.nodup_x_ctl.pooled.344M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF998QDV.crop_101-2bp.nodup_x_ctl.pooled.344M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF009REX.crop_101-2bp.nodup.pr1_x_ctl.pooled.355M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF009REX.crop_101-2bp.nodup.pr2_x_ctl.pooled.355M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF009REX.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF009REX.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF009REX.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF009REX.crop_101-2bp.nodup_x_ctl.pooled.355M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF009REX.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF009REX.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF009REX.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF998QDV.crop_101-2bp.nodup.pr1_x_ctl.pooled.344M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF998QDV.crop_101-2bp.nodup.pr2_x_ctl.pooled.344M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF998QDV.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF998QDV.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF998QDV.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF998QDV.crop_101-2bp.nodup_x_ctl.pooled.344M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF998QDV.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF998QDV.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF998QDV.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_dir2/chip/9b1a1f26-ea5f-4174-9a03-0fd2b7c69f39/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF009REX.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF009REX.crop_101-2bp.nodup_x_ctl.pooled.355M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF009REX.crop_101-2bp.nodup_x_ctl.pooled.355M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF998QDV.crop_101-2bp.nodup_x_ctl.pooled.344M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_dir2/chip/f177a16a-e9e9-4c2a-9593-0ee7a1d8319d/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF998QDV.crop_101-2bp.nodup_x_ctl.pooled.344M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 -5876401235360376278 chip.macs2_signal_track_pooled -3947018529198357013 BW FC -5876401235360376278->-3947018529198357013 -7406643726104565888 BW p-val -5876401235360376278->-7406643726104565888 -3005102867352355528 chip.call_peak_pooled 2691024250806933868 Peak (bfilt) -3005102867352355528->2691024250806933868 6428273929730005821 Peak -3005102867352355528->6428273929730005821 -5945920020563421124 chip.idr_ppr 6428273929730005821->-5945920020563421124 -8655727350152138781 chip.idr 6428273929730005821->-8655727350152138781 7789382818055232373 chip.overlap 6428273929730005821->7789382818055232373 -6741786665284307340 chip.overlap_ppr 6428273929730005821->-6741786665284307340 -4924010268255698020 chip.pool_ta -7733937348798660329 TAG-ALIGN -4924010268255698020->-7733937348798660329 -7733937348798660329->-5876401235360376278 -7733937348798660329->-3005102867352355528 -7733937348798660329->-5945920020563421124 -7733937348798660329->-8655727350152138781 -7733937348798660329->7789382818055232373 -7733937348798660329->-6741786665284307340 2192573755359725157 chip.call_peak -6738592729774292083 Peak (bfilt) 2192573755359725157->-6738592729774292083 3785223485953158751 Peak 2192573755359725157->3785223485953158751 3785223485953158751->-8655727350152138781 3785223485953158751->7789382818055232373 -3577333431299784291 chip.reproducibility_overlap 3785223485953158751->-3577333431299784291 -3015520737119234468 chip.reproducibility_idr 3785223485953158751->-3015520737119234468 4045604485039824197 chip.bam2ta -375116998769123312 TAG-ALIGN 4045604485039824197->-375116998769123312 -375116998769123312->-4924010268255698020 -375116998769123312->2192573755359725157 2064152836977219692 chip.macs2_signal_track -375116998769123312->2064152836977219692 -375116998769123312->-5945920020563421124 -375116998769123312->-3577333431299784291 -375116998769123312->-3015520737119234468 -375116998769123312->-6741786665284307340 9119638095955650246 chip.filter 6277965820103393631 SAMstats QC 9119638095955650246->6277965820103393631 -3283330431696501002 Filt/deduped BAM 9119638095955650246->-3283330431696501002 -6672138191477200946 LibCmplx QC 9119638095955650246->-6672138191477200946 -3283330431696501002->4045604485039824197 6904965227510652606 chip.jsd -3283330431696501002->6904965227510652606 5829485967565958463 chip.align 6792567510227331836 SAMstats QC 5829485967565958463->6792567510227331836 -4799661316788640036 BAM 5829485967565958463->-4799661316788640036 -4799661316788640036->9119638095955650246 -2241356983489761040 chip.xcor 5306939242538885153 XCOR Plot -2241356983489761040->5306939242538885153 4671916250537454582 BW FC 2064152836977219692->4671916250537454582 -74472520088081599 BW p-val 2064152836977219692->-74472520088081599 8692276484956241485 FASTQ R1 (1) 8692276484956241485->5829485967565958463 8692276484956241485->-2241356983489761040 -3395664699547794481 FASTQ R2 (1) -3395664699547794481->5829485967565958463 4638724567114295746 chip.call_peak 60049258875687318 Peak (bfilt) 4638724567114295746->60049258875687318 8930663812210670797 Peak 4638724567114295746->8930663812210670797 8930663812210670797->-8655727350152138781 8930663812210670797->7789382818055232373 8930663812210670797->-3577333431299784291 8930663812210670797->-3015520737119234468 -64623340872379059 chip.bam2ta 7109204892767346451 TAG-ALIGN -64623340872379059->7109204892767346451 7109204892767346451->-4924010268255698020 7109204892767346451->4638724567114295746 -6514695373262586106 chip.macs2_signal_track 7109204892767346451->-6514695373262586106 7109204892767346451->-5945920020563421124 7109204892767346451->-3577333431299784291 7109204892767346451->-3015520737119234468 7109204892767346451->-6741786665284307340 1592646553990208810 chip.filter 8176918569858398085 SAMstats QC 1592646553990208810->8176918569858398085 -9017458148561627096 Filt/deduped BAM 1592646553990208810->-9017458148561627096 7511579258757239789 LibCmplx QC 1592646553990208810->7511579258757239789 -9017458148561627096->-64623340872379059 -9017458148561627096->6904965227510652606 -4394924596698511400 chip.align -717067795982075469 SAMstats QC -4394924596698511400->-717067795982075469 8529900312728469214 BAM -4394924596698511400->8529900312728469214 8529900312728469214->1592646553990208810 5795942025715245645 chip.xcor -8366478030240374943 XCOR Plot 5795942025715245645->-8366478030240374943 8111539212150486524 BW FC -6514695373262586106->8111539212150486524 -5965827905246943411 BW p-val -6514695373262586106->-5965827905246943411 -1879975426413085540 FASTQ R1 (1) -1879975426413085540->-4394924596698511400 -1879975426413085540->5795942025715245645 2545643218213987140 FASTQ R2 (1) 2545643218213987140->-4394924596698511400 4776282200658836860 chip.pool_ta_ctl -2195465682786454624 TAG-ALIGN 4776282200658836860->-2195465682786454624 -2195465682786454624->-5876401235360376278 -2195465682786454624->-3005102867352355528 -2195465682786454624->2192573755359725157 -2195465682786454624->2064152836977219692 -2195465682786454624->4638724567114295746 -2195465682786454624->-6514695373262586106 -2195465682786454624->-5945920020563421124 -2195465682786454624->-3577333431299784291 -2195465682786454624->-3015520737119234468 -2195465682786454624->-6741786665284307340 -9006454854745910751 chip.bam2ta_ctl 5099054109983573290 TAG-ALIGN -9006454854745910751->5099054109983573290 5099054109983573290->4776282200658836860 -8771777873352757435 Filt/deduped BAM -8771777873352757435->-9006454854745910751 -8771777873352757435->6904965227510652606 6667771053978566638 chip.bam2ta_ctl -5447797297647828752 TAG-ALIGN 6667771053978566638->-5447797297647828752 -5447797297647828752->4776282200658836860 -6697099682798006093 Filt/deduped BAM -6697099682798006093->6667771053978566638 -6697099682798006093->6904965227510652606 1724771541781964341 chip.bam2ta_ctl -4402677142237549026 TAG-ALIGN 1724771541781964341->-4402677142237549026 -4402677142237549026->4776282200658836860 -8785023251608456109 Filt/deduped BAM -8785023251608456109->1724771541781964341 -8785023251608456109->6904965227510652606 8121598909094673319 chip.bam2ta_ctl -4798839588860383259 TAG-ALIGN 8121598909094673319->-4798839588860383259 -4798839588860383259->4776282200658836860 -2225281033590346349 Filt/deduped BAM -2225281033590346349->8121598909094673319 -2225281033590346349->6904965227510652606 -3125205708248317342 chip.bam2ta_ctl 3513441961986071341 TAG-ALIGN -3125205708248317342->3513441961986071341 3513441961986071341->4776282200658836860 -2902643095052065565 Filt/deduped BAM -2902643095052065565->-3125205708248317342 -2902643095052065565->6904965227510652606 706709544618984323 chip.bam2ta_ctl 4435033621213765464 TAG-ALIGN 706709544618984323->4435033621213765464 4435033621213765464->4776282200658836860 3825736740802771022 Filt/deduped BAM 3825736740802771022->706709544618984323 3825736740802771022->6904965227510652606 -6754587824305238045 IDR Plot ppr -5945920020563421124->-6754587824305238045 7607245178672375301 IDR Peak ppr -5945920020563421124->7607245178672375301 7607245178672375301->-3015520737119234468 -4751588141547600278 IDR Plot rep1_vs_rep2 -8655727350152138781->-4751588141547600278 6853720134411152916 IDR NPeak rep1_vs_rep2 -8655727350152138781->6853720134411152916 6853720134411152916->-3015520737119234468 -7474390558017496847 Overlap Peak rep1_vs_rep2 7789382818055232373->-7474390558017496847 -7474390558017496847->-3577333431299784291 -3201235539885105073 Overlap Peak optimal -3577333431299784291->-3201235539885105073 4054942793267419233 Overlap reproducibility -3577333431299784291->4054942793267419233 -2569146095570811785 IDR Peak optimal -3015520737119234468->-2569146095570811785 -3948885323626171215 IDR reproducibility -3015520737119234468->-3948885323626171215 -316226832523617411 Overlap Peak ppr -6741786665284307340->-316226832523617411 -316226832523617411->-3577333431299784291 4113112386980412784 JSD Plot 6904965227510652606->4113112386980412784

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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