File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF385MZK.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF385MZK.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF385MZK.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF385MZK.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF385MZK.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF903BWT.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF903BWT.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF903BWT.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF903BWT.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF903BWT.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.544M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.544M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.544M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.544M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.544M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.544M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.544M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.544M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.544M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.544M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.544M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.544M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF385MZK.crop_101-2bp.nodup.pr1_x_ctl.pooled.288M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF385MZK.crop_101-2bp.nodup.pr1_x_ctl.pooled.288M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF385MZK.crop_101-2bp.nodup.pr1_x_ctl.pooled.288M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF385MZK.crop_101-2bp.nodup.pr1_x_ctl.pooled.288M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF385MZK.crop_101-2bp.nodup.pr2_x_ctl.pooled.288M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF385MZK.crop_101-2bp.nodup.pr2_x_ctl.pooled.288M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF385MZK.crop_101-2bp.nodup.pr2_x_ctl.pooled.288M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF385MZK.crop_101-2bp.nodup.pr2_x_ctl.pooled.288M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF903BWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF903BWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF903BWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF903BWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF903BWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF903BWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF903BWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF903BWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.544M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.544M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.544M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF385MZK.crop_101-2bp.nodup.pr1_x_ctl.pooled.288M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF385MZK.crop_101-2bp.nodup.pr2_x_ctl.pooled.288M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF385MZK.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF385MZK.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF385MZK.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF385MZK.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF385MZK.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF385MZK.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF903BWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF903BWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF903BWT.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF903BWT.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF903BWT.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF903BWT.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF903BWT.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF903BWT.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF385MZK.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.544M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.544M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 6758240757178629838 chip.macs2_signal_track_pooled -178994106657039077 BW FC 6758240757178629838->-178994106657039077 8019987661937238564 BW p-val 6758240757178629838->8019987661937238564 2201749660818394816 chip.call_peak_pooled -2114782503806444976 Peak (bfilt) 2201749660818394816->-2114782503806444976 -5179370419079915730 Peak 2201749660818394816->-5179370419079915730 -6481326828343749115 chip.idr_ppr -5179370419079915730->-6481326828343749115 -6975189967061681476 chip.idr -5179370419079915730->-6975189967061681476 2000457388309527994 chip.overlap -5179370419079915730->2000457388309527994 -4054748642249580106 chip.overlap_ppr -5179370419079915730->-4054748642249580106 -3680947526875280772 chip.pool_ta 595426365306246107 TAG-ALIGN -3680947526875280772->595426365306246107 595426365306246107->6758240757178629838 595426365306246107->2201749660818394816 595426365306246107->-6481326828343749115 595426365306246107->-6975189967061681476 595426365306246107->2000457388309527994 595426365306246107->-4054748642249580106 2803173627204435606 chip.call_peak 251750822221246865 Peak (bfilt) 2803173627204435606->251750822221246865 -8261401511197599098 Peak 2803173627204435606->-8261401511197599098 -8261401511197599098->-6975189967061681476 -8261401511197599098->2000457388309527994 -3733445207844320299 chip.reproducibility_overlap -8261401511197599098->-3733445207844320299 4231054846849328804 chip.reproducibility_idr -8261401511197599098->4231054846849328804 -1976154765983540929 chip.bam2ta 9129074990039735400 TAG-ALIGN -1976154765983540929->9129074990039735400 9129074990039735400->-3680947526875280772 9129074990039735400->2803173627204435606 -5607475351645276081 chip.macs2_signal_track 9129074990039735400->-5607475351645276081 9129074990039735400->-6481326828343749115 9129074990039735400->-3733445207844320299 9129074990039735400->4231054846849328804 9129074990039735400->-4054748642249580106 -7684159104260337637 chip.filter -172602283277735754 SAMstats QC -7684159104260337637->-172602283277735754 6650503291867003730 Filt/deduped BAM -7684159104260337637->6650503291867003730 -8918295818160508924 LibCmplx QC -7684159104260337637->-8918295818160508924 6650503291867003730->-1976154765983540929 -8781875604221521978 chip.jsd 6650503291867003730->-8781875604221521978 -8302015230925171130 chip.align 632634952227757697 SAMstats QC -8302015230925171130->632634952227757697 -9173504428940382368 BAM -8302015230925171130->-9173504428940382368 -9173504428940382368->-7684159104260337637 4208017233475951705 chip.xcor -9165838646242911429 XCOR Plot 4208017233475951705->-9165838646242911429 -6772474392583412454 BW FC -5607475351645276081->-6772474392583412454 90782994178443354 BW p-val -5607475351645276081->90782994178443354 1065823139885734848 FASTQ R1 (1) 1065823139885734848->-8302015230925171130 1065823139885734848->4208017233475951705 -4222135446856610658 FASTQ R2 (1) -4222135446856610658->-8302015230925171130 268889709407408369 chip.call_peak 2355423177184973368 Peak (bfilt) 268889709407408369->2355423177184973368 6295478984717579391 Peak 268889709407408369->6295478984717579391 6295478984717579391->-6975189967061681476 6295478984717579391->2000457388309527994 6295478984717579391->-3733445207844320299 6295478984717579391->4231054846849328804 -3007573106303683496 chip.bam2ta 1547839215934209145 TAG-ALIGN -3007573106303683496->1547839215934209145 1547839215934209145->-3680947526875280772 1547839215934209145->268889709407408369 -3300556933555662663 chip.macs2_signal_track 1547839215934209145->-3300556933555662663 1547839215934209145->-6481326828343749115 1547839215934209145->-3733445207844320299 1547839215934209145->4231054846849328804 1547839215934209145->-4054748642249580106 7369718076892316185 chip.filter 4185437847603364521 SAMstats QC 7369718076892316185->4185437847603364521 8420097993395499617 Filt/deduped BAM 7369718076892316185->8420097993395499617 1168478330792728684 LibCmplx QC 7369718076892316185->1168478330792728684 8420097993395499617->-3007573106303683496 8420097993395499617->-8781875604221521978 -7589945402233196807 chip.align -574427897105057925 SAMstats QC -7589945402233196807->-574427897105057925 -1134015273254055626 BAM -7589945402233196807->-1134015273254055626 -1134015273254055626->7369718076892316185 4258045478263516877 chip.xcor 2282199938896594639 XCOR Plot 4258045478263516877->2282199938896594639 -6628114702475080302 BW FC -3300556933555662663->-6628114702475080302 -7133658641674829637 BW p-val -3300556933555662663->-7133658641674829637 -7242847753736932075 FASTQ R1 (1) -7242847753736932075->-7589945402233196807 -7242847753736932075->4258045478263516877 5137420525457855706 FASTQ R2 (1) 5137420525457855706->-7589945402233196807 1836265322491202375 chip.pool_ta_ctl 7798184538009709716 TAG-ALIGN 1836265322491202375->7798184538009709716 7798184538009709716->6758240757178629838 7798184538009709716->2201749660818394816 7798184538009709716->2803173627204435606 7798184538009709716->-5607475351645276081 7798184538009709716->268889709407408369 7798184538009709716->-3300556933555662663 7798184538009709716->-6481326828343749115 7798184538009709716->-3733445207844320299 7798184538009709716->4231054846849328804 7798184538009709716->-4054748642249580106 2319939226501477417 chip.bam2ta_ctl 1014751927334900844 TAG-ALIGN 2319939226501477417->1014751927334900844 1014751927334900844->1836265322491202375 3093693410407453497 Filt/deduped BAM 3093693410407453497->2319939226501477417 3093693410407453497->-8781875604221521978 -5766641291398797654 chip.bam2ta_ctl -8863479259791619437 TAG-ALIGN -5766641291398797654->-8863479259791619437 -8863479259791619437->1836265322491202375 5727034291048084620 Filt/deduped BAM 5727034291048084620->-5766641291398797654 5727034291048084620->-8781875604221521978 -6439958565998566504 chip.bam2ta_ctl -5378463730106875073 TAG-ALIGN -6439958565998566504->-5378463730106875073 -5378463730106875073->1836265322491202375 -6119289406910793449 Filt/deduped BAM -6119289406910793449->-6439958565998566504 -6119289406910793449->-8781875604221521978 -5525345052348318790 chip.bam2ta_ctl -3773522129348194049 TAG-ALIGN -5525345052348318790->-3773522129348194049 -3773522129348194049->1836265322491202375 6893860485749863418 Filt/deduped BAM 6893860485749863418->-5525345052348318790 6893860485749863418->-8781875604221521978 -8489624059476860390 chip.bam2ta_ctl -2897960951904496420 TAG-ALIGN -8489624059476860390->-2897960951904496420 -2897960951904496420->1836265322491202375 -5548238880999622174 Filt/deduped BAM -5548238880999622174->-8489624059476860390 -5548238880999622174->-8781875604221521978 4598844082565431800 chip.bam2ta_ctl -6283513219901285747 TAG-ALIGN 4598844082565431800->-6283513219901285747 -6283513219901285747->1836265322491202375 -1778780214746469128 Filt/deduped BAM -1778780214746469128->4598844082565431800 -1778780214746469128->-8781875604221521978 -3487855055506211020 chip.bam2ta_ctl 6788010238412672632 TAG-ALIGN -3487855055506211020->6788010238412672632 6788010238412672632->1836265322491202375 -5569405747500362830 Filt/deduped BAM -5569405747500362830->-3487855055506211020 -5569405747500362830->-8781875604221521978 7102518987576758823 chip.bam2ta_ctl 2415968044266693269 TAG-ALIGN 7102518987576758823->2415968044266693269 2415968044266693269->1836265322491202375 -2045909089115484491 Filt/deduped BAM -2045909089115484491->7102518987576758823 -2045909089115484491->-8781875604221521978 -3706212183130398369 chip.bam2ta_ctl 1965063354932912834 TAG-ALIGN -3706212183130398369->1965063354932912834 1965063354932912834->1836265322491202375 -6568992507259452119 Filt/deduped BAM -6568992507259452119->-3706212183130398369 -6568992507259452119->-8781875604221521978 4710106739069078593 chip.bam2ta_ctl 6352492000755088279 TAG-ALIGN 4710106739069078593->6352492000755088279 6352492000755088279->1836265322491202375 9055781694584753883 Filt/deduped BAM 9055781694584753883->4710106739069078593 9055781694584753883->-8781875604221521978 -3498429348358273255 chip.bam2ta_ctl -1706556173810371389 TAG-ALIGN -3498429348358273255->-1706556173810371389 -1706556173810371389->1836265322491202375 2619538160626990954 Filt/deduped BAM 2619538160626990954->-3498429348358273255 2619538160626990954->-8781875604221521978 6934306320461225579 chip.bam2ta_ctl -6582674987629199223 TAG-ALIGN 6934306320461225579->-6582674987629199223 -6582674987629199223->1836265322491202375 -2850451959338560999 Filt/deduped BAM -2850451959338560999->6934306320461225579 -2850451959338560999->-8781875604221521978 -6378478191840099415 chip.bam2ta_ctl 8081034907215818754 TAG-ALIGN -6378478191840099415->8081034907215818754 8081034907215818754->1836265322491202375 1180714251007649595 Filt/deduped BAM 1180714251007649595->-6378478191840099415 1180714251007649595->-8781875604221521978 7997825050426856476 chip.bam2ta_ctl 8402120612411856137 TAG-ALIGN 7997825050426856476->8402120612411856137 8402120612411856137->1836265322491202375 -2467391275594148328 Filt/deduped BAM -2467391275594148328->7997825050426856476 -2467391275594148328->-8781875604221521978 -8536318453987810688 chip.bam2ta_ctl 4371228265805438800 TAG-ALIGN -8536318453987810688->4371228265805438800 4371228265805438800->1836265322491202375 -930465026330536178 Filt/deduped BAM -930465026330536178->-8536318453987810688 -930465026330536178->-8781875604221521978 -4924761797595841481 chip.bam2ta_ctl -2667489511244110390 TAG-ALIGN -4924761797595841481->-2667489511244110390 -2667489511244110390->1836265322491202375 -6843133833314601760 Filt/deduped BAM -6843133833314601760->-4924761797595841481 -6843133833314601760->-8781875604221521978 -7722803481813193365 chip.bam2ta_ctl 5624331233813328199 TAG-ALIGN -7722803481813193365->5624331233813328199 5624331233813328199->1836265322491202375 4360204910698822202 Filt/deduped BAM 4360204910698822202->-7722803481813193365 4360204910698822202->-8781875604221521978 7546214017039106481 chip.bam2ta_ctl 7406720269873031572 TAG-ALIGN 7546214017039106481->7406720269873031572 7406720269873031572->1836265322491202375 -5994543483448977210 Filt/deduped BAM -5994543483448977210->7546214017039106481 -5994543483448977210->-8781875604221521978 -6425096667611672156 chip.bam2ta_ctl -7720610168020330 TAG-ALIGN -6425096667611672156->-7720610168020330 -7720610168020330->1836265322491202375 6819002240587070340 Filt/deduped BAM 6819002240587070340->-6425096667611672156 6819002240587070340->-8781875604221521978 1406533644672153443 chip.bam2ta_ctl -8386517999653841834 TAG-ALIGN 1406533644672153443->-8386517999653841834 -8386517999653841834->1836265322491202375 -5877972670345439700 Filt/deduped BAM -5877972670345439700->1406533644672153443 -5877972670345439700->-8781875604221521978 2894764647797433438 chip.bam2ta_ctl -4481046732686413983 TAG-ALIGN 2894764647797433438->-4481046732686413983 -4481046732686413983->1836265322491202375 3786479800639071393 Filt/deduped BAM 3786479800639071393->2894764647797433438 3786479800639071393->-8781875604221521978 3802435982770383995 chip.bam2ta_ctl -4445750564791322072 TAG-ALIGN 3802435982770383995->-4445750564791322072 -4445750564791322072->1836265322491202375 -4682507969393780232 Filt/deduped BAM -4682507969393780232->3802435982770383995 -4682507969393780232->-8781875604221521978 484079401978357185 chip.bam2ta_ctl 2853640776418365810 TAG-ALIGN 484079401978357185->2853640776418365810 2853640776418365810->1836265322491202375 5745787998766029149 Filt/deduped BAM 5745787998766029149->484079401978357185 5745787998766029149->-8781875604221521978 4403124719479132264 chip.bam2ta_ctl 4687328276651141276 TAG-ALIGN 4403124719479132264->4687328276651141276 4687328276651141276->1836265322491202375 3061124576288148925 Filt/deduped BAM 3061124576288148925->4403124719479132264 3061124576288148925->-8781875604221521978 1592682774642267512 IDR Plot ppr -6481326828343749115->1592682774642267512 -1932796756562890595 IDR Peak ppr -6481326828343749115->-1932796756562890595 -1932796756562890595->4231054846849328804 5756894079383888556 IDR Plot rep1_vs_rep2 -6975189967061681476->5756894079383888556 5664097835538276228 IDR NPeak rep1_vs_rep2 -6975189967061681476->5664097835538276228 5664097835538276228->4231054846849328804 4092171381312412988 Overlap Peak rep1_vs_rep2 2000457388309527994->4092171381312412988 4092171381312412988->-3733445207844320299 5260690205755867369 Overlap Peak optimal -3733445207844320299->5260690205755867369 -8601931000671074196 Overlap reproducibility -3733445207844320299->-8601931000671074196 4064209269555156504 IDR Peak optimal 4231054846849328804->4064209269555156504 1659074695097831578 IDR reproducibility 4231054846849328804->1659074695097831578 -6058254763958926029 Overlap Peak ppr -4054748642249580106->-6058254763958926029 -6058254763958926029->-3733445207844320299 -6349235482302425946 JSD Plot -8781875604221521978->-6349235482302425946

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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