File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF385MZK.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF385MZK.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF385MZK.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF385MZK.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF385MZK.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF903BWT.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF903BWT.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF903BWT.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF903BWT.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF903BWT.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.544M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.544M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.544M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF385MZK.crop_101-2bp.nodup.pr1_x_ctl.pooled.288M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF385MZK.crop_101-2bp.nodup.pr1_x_ctl.pooled.288M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF385MZK.crop_101-2bp.nodup.pr1_x_ctl.pooled.288M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF385MZK.crop_101-2bp.nodup.pr1_x_ctl.pooled.288M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF385MZK.crop_101-2bp.nodup.pr2_x_ctl.pooled.288M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF385MZK.crop_101-2bp.nodup.pr2_x_ctl.pooled.288M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF385MZK.crop_101-2bp.nodup.pr2_x_ctl.pooled.288M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF385MZK.crop_101-2bp.nodup.pr2_x_ctl.pooled.288M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF903BWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF903BWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF903BWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF903BWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF903BWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF903BWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF903BWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF903BWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.544M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF385MZK.crop_101-2bp.nodup.pr1_x_ctl.pooled.288M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF385MZK.crop_101-2bp.nodup.pr2_x_ctl.pooled.288M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF385MZK.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF385MZK.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF385MZK.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF385MZK.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF385MZK.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF385MZK.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF903BWT.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF903BWT.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF903BWT.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF903BWT.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF903BWT.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF903BWT.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF903BWT.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF903BWT.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF385MZK.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/296a2760-ba13-49bf-9957-b1930910a2d6/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.544M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.544M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -660808625455759630 chip.macs2_signal_track_pooled -2860378273606804155 BW FC -660808625455759630->-2860378273606804155 -5849585068029785019 BW p-val -660808625455759630->-5849585068029785019 -2247950399599892281 chip.call_peak_pooled 1474283604045811927 Peak (bfilt) -2247950399599892281->1474283604045811927 -8427710292232305870 Peak -2247950399599892281->-8427710292232305870 6103342749011845050 chip.idr_ppr -8427710292232305870->6103342749011845050 -3203064974986757901 chip.idr -8427710292232305870->-3203064974986757901 6352667461871201148 chip.overlap -8427710292232305870->6352667461871201148 -3739605653876603740 chip.overlap_ppr -8427710292232305870->-3739605653876603740 862693221697057275 chip.pool_ta -6364910073743741942 TAG-ALIGN 862693221697057275->-6364910073743741942 -6364910073743741942->-660808625455759630 -6364910073743741942->-2247950399599892281 -6364910073743741942->6103342749011845050 -6364910073743741942->-3203064974986757901 -6364910073743741942->6352667461871201148 -6364910073743741942->-3739605653876603740 -7415667362467724447 chip.call_peak 2239413590922090491 Peak (bfilt) -7415667362467724447->2239413590922090491 -7758829292530311924 Peak -7415667362467724447->-7758829292530311924 -7758829292530311924->-3203064974986757901 -7758829292530311924->6352667461871201148 -1965400307717259209 chip.reproducibility_overlap -7758829292530311924->-1965400307717259209 -1429798970004390658 chip.reproducibility_idr -7758829292530311924->-1429798970004390658 831169732290267394 chip.bam2ta 4455279556068418321 TAG-ALIGN 831169732290267394->4455279556068418321 4455279556068418321->862693221697057275 4455279556068418321->-7415667362467724447 -7898590026382811872 chip.macs2_signal_track 4455279556068418321->-7898590026382811872 4455279556068418321->6103342749011845050 4455279556068418321->-1965400307717259209 4455279556068418321->-1429798970004390658 4455279556068418321->-3739605653876603740 -5156093671916034629 chip.filter 932077261110911909 SAMstats QC -5156093671916034629->932077261110911909 4445385025464814124 Filt/deduped BAM -5156093671916034629->4445385025464814124 224370373640973047 LibCmplx QC -5156093671916034629->224370373640973047 4445385025464814124->831169732290267394 4351672842059258571 chip.jsd 4445385025464814124->4351672842059258571 -7346195839916354676 chip.align -7160670698921323633 SAMstats QC -7346195839916354676->-7160670698921323633 9165750701400834810 BAM -7346195839916354676->9165750701400834810 9165750701400834810->-5156093671916034629 -3250023592447466253 chip.xcor 4316729574745025161 XCOR Plot -3250023592447466253->4316729574745025161 -3355160918368017841 BW FC -7898590026382811872->-3355160918368017841 6028297207859598656 BW p-val -7898590026382811872->6028297207859598656 1387121485164386746 FASTQ R1 (1) 1387121485164386746->-7346195839916354676 1387121485164386746->-3250023592447466253 706690382996529728 FASTQ R2 (1) 706690382996529728->-7346195839916354676 8498437843600892766 chip.call_peak -2275790008416817889 Peak (bfilt) 8498437843600892766->-2275790008416817889 -3227019984550285950 Peak 8498437843600892766->-3227019984550285950 -3227019984550285950->-3203064974986757901 -3227019984550285950->6352667461871201148 -3227019984550285950->-1965400307717259209 -3227019984550285950->-1429798970004390658 -6248377678609481349 chip.bam2ta 2003055235299612140 TAG-ALIGN -6248377678609481349->2003055235299612140 2003055235299612140->862693221697057275 2003055235299612140->8498437843600892766 -6477386234088360967 chip.macs2_signal_track 2003055235299612140->-6477386234088360967 2003055235299612140->6103342749011845050 2003055235299612140->-1965400307717259209 2003055235299612140->-1429798970004390658 2003055235299612140->-3739605653876603740 -1097889704256525064 chip.filter 8514559064354305409 SAMstats QC -1097889704256525064->8514559064354305409 -1331295042937568239 Filt/deduped BAM -1097889704256525064->-1331295042937568239 -3839021823300481987 LibCmplx QC -1097889704256525064->-3839021823300481987 -1331295042937568239->-6248377678609481349 -1331295042937568239->4351672842059258571 2125508255963818484 chip.align 392617087996892938 SAMstats QC 2125508255963818484->392617087996892938 4466062469807463310 BAM 2125508255963818484->4466062469807463310 4466062469807463310->-1097889704256525064 7473103361075529356 chip.xcor -5597145487995332215 XCOR Plot 7473103361075529356->-5597145487995332215 -8235112735563086672 BW FC -6477386234088360967->-8235112735563086672 -1563686882743689213 BW p-val -6477386234088360967->-1563686882743689213 5399656148233472400 FASTQ R1 (1) 5399656148233472400->2125508255963818484 5399656148233472400->7473103361075529356 3868269845878036868 FASTQ R2 (1) 3868269845878036868->2125508255963818484 4930734428950891839 chip.pool_ta_ctl -7382876719333437313 TAG-ALIGN 4930734428950891839->-7382876719333437313 -7382876719333437313->-660808625455759630 -7382876719333437313->-2247950399599892281 -7382876719333437313->-7415667362467724447 -7382876719333437313->-7898590026382811872 -7382876719333437313->8498437843600892766 -7382876719333437313->-6477386234088360967 -7382876719333437313->6103342749011845050 -7382876719333437313->-1965400307717259209 -7382876719333437313->-1429798970004390658 -7382876719333437313->-3739605653876603740 -5284687855314677785 chip.bam2ta_ctl 740448185930983597 TAG-ALIGN -5284687855314677785->740448185930983597 740448185930983597->4930734428950891839 3871006874316012202 Filt/deduped BAM 3871006874316012202->-5284687855314677785 3871006874316012202->4351672842059258571 5725107013065405009 chip.bam2ta_ctl -5334810736931297138 TAG-ALIGN 5725107013065405009->-5334810736931297138 -5334810736931297138->4930734428950891839 -6203801652224057810 Filt/deduped BAM -6203801652224057810->5725107013065405009 -6203801652224057810->4351672842059258571 -1957244688574891576 chip.bam2ta_ctl -1304339124707080711 TAG-ALIGN -1957244688574891576->-1304339124707080711 -1304339124707080711->4930734428950891839 1298883387635159131 Filt/deduped BAM 1298883387635159131->-1957244688574891576 1298883387635159131->4351672842059258571 9122125158503294372 chip.bam2ta_ctl -875881369720106011 TAG-ALIGN 9122125158503294372->-875881369720106011 -875881369720106011->4930734428950891839 -3513755976301452232 Filt/deduped BAM -3513755976301452232->9122125158503294372 -3513755976301452232->4351672842059258571 870310551894205395 chip.bam2ta_ctl -2542397582201919302 TAG-ALIGN 870310551894205395->-2542397582201919302 -2542397582201919302->4930734428950891839 -3858841337070812777 Filt/deduped BAM -3858841337070812777->870310551894205395 -3858841337070812777->4351672842059258571 -7902739160282082973 chip.bam2ta_ctl -725946192559371833 TAG-ALIGN -7902739160282082973->-725946192559371833 -725946192559371833->4930734428950891839 6722960714684788695 Filt/deduped BAM 6722960714684788695->-7902739160282082973 6722960714684788695->4351672842059258571 -3641619082659110131 chip.bam2ta_ctl -8866999400358542407 TAG-ALIGN -3641619082659110131->-8866999400358542407 -8866999400358542407->4930734428950891839 334964950157893778 Filt/deduped BAM 334964950157893778->-3641619082659110131 334964950157893778->4351672842059258571 -259489023249303188 chip.bam2ta_ctl 8745783284976636571 TAG-ALIGN -259489023249303188->8745783284976636571 8745783284976636571->4930734428950891839 2073577571031943094 Filt/deduped BAM 2073577571031943094->-259489023249303188 2073577571031943094->4351672842059258571 -6100003260298747210 chip.bam2ta_ctl 5141502902553086968 TAG-ALIGN -6100003260298747210->5141502902553086968 5141502902553086968->4930734428950891839 1728659958782379468 Filt/deduped BAM 1728659958782379468->-6100003260298747210 1728659958782379468->4351672842059258571 -8874856256738648861 chip.bam2ta_ctl -5957002687323126905 TAG-ALIGN -8874856256738648861->-5957002687323126905 -5957002687323126905->4930734428950891839 -7722007822687625501 Filt/deduped BAM -7722007822687625501->-8874856256738648861 -7722007822687625501->4351672842059258571 3869163516024172500 chip.bam2ta_ctl 3317030620465621371 TAG-ALIGN 3869163516024172500->3317030620465621371 3317030620465621371->4930734428950891839 -1563567941795405419 Filt/deduped BAM -1563567941795405419->3869163516024172500 -1563567941795405419->4351672842059258571 6752146966159775196 chip.bam2ta_ctl 5362987694721105528 TAG-ALIGN 6752146966159775196->5362987694721105528 5362987694721105528->4930734428950891839 -4215771453052508577 Filt/deduped BAM -4215771453052508577->6752146966159775196 -4215771453052508577->4351672842059258571 -3600625823358461821 chip.bam2ta_ctl 652783339936569465 TAG-ALIGN -3600625823358461821->652783339936569465 652783339936569465->4930734428950891839 -4677729367393757490 Filt/deduped BAM -4677729367393757490->-3600625823358461821 -4677729367393757490->4351672842059258571 2032627825830333577 chip.bam2ta_ctl 6336422827664509201 TAG-ALIGN 2032627825830333577->6336422827664509201 6336422827664509201->4930734428950891839 -4269499770501250789 Filt/deduped BAM -4269499770501250789->2032627825830333577 -4269499770501250789->4351672842059258571 3863912586924790130 chip.bam2ta_ctl 4133394127522882685 TAG-ALIGN 3863912586924790130->4133394127522882685 4133394127522882685->4930734428950891839 -7827332035869960563 Filt/deduped BAM -7827332035869960563->3863912586924790130 -7827332035869960563->4351672842059258571 -9082342577672925707 chip.bam2ta_ctl 7157035278163621686 TAG-ALIGN -9082342577672925707->7157035278163621686 7157035278163621686->4930734428950891839 214916866530956640 Filt/deduped BAM 214916866530956640->-9082342577672925707 214916866530956640->4351672842059258571 -4003291794475483849 chip.bam2ta_ctl 5409976313211935849 TAG-ALIGN -4003291794475483849->5409976313211935849 5409976313211935849->4930734428950891839 -8658763567306976770 Filt/deduped BAM -8658763567306976770->-4003291794475483849 -8658763567306976770->4351672842059258571 2322157073417437177 chip.bam2ta_ctl 8106023895242132822 TAG-ALIGN 2322157073417437177->8106023895242132822 8106023895242132822->4930734428950891839 -5862174155437541346 Filt/deduped BAM -5862174155437541346->2322157073417437177 -5862174155437541346->4351672842059258571 237763183078260866 chip.bam2ta_ctl -4056776556952673382 TAG-ALIGN 237763183078260866->-4056776556952673382 -4056776556952673382->4930734428950891839 8431591985889178184 Filt/deduped BAM 8431591985889178184->237763183078260866 8431591985889178184->4351672842059258571 -2074249838680445411 chip.bam2ta_ctl 1536806132825897776 TAG-ALIGN -2074249838680445411->1536806132825897776 1536806132825897776->4930734428950891839 4284837087152177190 Filt/deduped BAM 4284837087152177190->-2074249838680445411 4284837087152177190->4351672842059258571 2363993629707546348 chip.bam2ta_ctl 9195964349311214672 TAG-ALIGN 2363993629707546348->9195964349311214672 9195964349311214672->4930734428950891839 6766751506346155506 Filt/deduped BAM 6766751506346155506->2363993629707546348 6766751506346155506->4351672842059258571 815557400773208513 chip.bam2ta_ctl 6464452735760708017 TAG-ALIGN 815557400773208513->6464452735760708017 6464452735760708017->4930734428950891839 -2106539299554087397 Filt/deduped BAM -2106539299554087397->815557400773208513 -2106539299554087397->4351672842059258571 -7826879220124433347 chip.bam2ta_ctl -556118551948230365 TAG-ALIGN -7826879220124433347->-556118551948230365 -556118551948230365->4930734428950891839 6122877716216820076 Filt/deduped BAM 6122877716216820076->-7826879220124433347 6122877716216820076->4351672842059258571 3254004565780103569 chip.bam2ta_ctl 8911463890600560044 TAG-ALIGN 3254004565780103569->8911463890600560044 8911463890600560044->4930734428950891839 482674167162018034 Filt/deduped BAM 482674167162018034->3254004565780103569 482674167162018034->4351672842059258571 6121495966462078421 IDR Plot ppr 6103342749011845050->6121495966462078421 -6852187233595005362 IDR Peak ppr 6103342749011845050->-6852187233595005362 -6852187233595005362->-1429798970004390658 -7331000418537784568 IDR Plot rep1_vs_rep2 -3203064974986757901->-7331000418537784568 6663964118830622682 IDR NPeak rep1_vs_rep2 -3203064974986757901->6663964118830622682 6663964118830622682->-1429798970004390658 974588914351140661 Overlap Peak rep1_vs_rep2 6352667461871201148->974588914351140661 974588914351140661->-1965400307717259209 7698241677921844781 Overlap Peak optimal -1965400307717259209->7698241677921844781 -3585355062672843149 Overlap reproducibility -1965400307717259209->-3585355062672843149 -4392201172677759949 IDR Peak optimal -1429798970004390658->-4392201172677759949 1382189929726530795 IDR reproducibility -1429798970004390658->1382189929726530795 -1238140904067299089 Overlap Peak ppr -3739605653876603740->-1238140904067299089 -1238140904067299089->-1965400307717259209 -1772507463552351171 JSD Plot 4351672842059258571->-1772507463552351171

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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track type=bigWig name="MACS2 p-val (rep2)" priority=2 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF903BWT.crop_101-2bp.nodup_x_ctl.pooled.255M.pval.signal.bigwig?Expires=1601331268&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=QGU9qu9j9HU5uch%2F9RN%2F%2BQ1vAah%2BXS10mrQYD4mU7iyX5GMDe09js4pe46msvq9j9rnU8YxtQe2Nxvnjgyf0FgHmPB1%2FR0pCVuqw6aNjd4GX7KvXzu1D6UuG%2B9E%2FYZjKWOtXPamFnGFzWFUMORe9aytSSfIpiEd0Kzkkl2YQ8A627%2BDsrf861rETuw4ng0wIeXqt9YzfhNYI5eOvxeTbCm%2FJH1yufKHERydx8UbRbkjFbQFWBk5chM6uEszKsiWoMJdgSEOzfZ%2BHxRBymdqsYWdUlRl7PpMxdeQgEj6P0axDPOy%2Bsufy5pFIZ8qfd%2Bo%2B63jLLzacY43gYLs4M6Z5%2Fw%3D%3D"
track type=bigWig name="MACS2 fc (rep1)" priority=1 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF385MZK.crop_101-2bp.nodup_x_ctl.pooled.288M.fc.signal.bigwig?Expires=1601331268&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=V5WNsBTxIohxSip2hIWXdzlV2uVMuPUaAmo0nM4t2jYa8SvgihPyFnI0730fOSj67Lk93Nl%2BGbjZryEiAsFvght3eHRVkZEyCgUkDFPUlSJYSdzy0Tru85aS85ZbvYPjNdBYX4RjSUar51Yvr1m5PLxsis6jOaKBrkiQ1IjToXhgqONUcmWYLLlpoGOjvAdL5Ip0P1yiTTqssIbiFwH51jhWoRCmPWMmjNcPdfIOReJ8C1CRHiWzikupOsWXkZdeEfBnH8b398uxkk%2BpP5ZOHDnBjsSX%2BFjmRR3TZgCYPYx%2BRlijsEGbuKO6do6S4xBzKR%2B%2BDN7%2BTmEE4wXy4jj4ag%3D%3D"
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track type=bigWig name="MACS2 p-val (pooled)" priority=0 smoothingWindow=off maxHeightPixels=80:60:40 color=255,0,0 autoScale=off viewLimits=0:40 visibility=full bigDataUrl="https://storage.googleapis.com/encode-processing/caper_out_v8_20/chip/419d37ca-819d-457d-af3c-ac48e9566aaa/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.544M.pval.signal.bigwig?Expires=1601331268&GoogleAccessId=encode-processing-caper-server%40encode-processing.iam.gserviceaccount.com&Signature=AKsPtvw75u4ZNPQid4%2BIjJwsoX%2FAAz0VJkuFbO6Ozeq3lkDUdwwSMt48KiNfwnxP6x%2FMBIs0GQJGwmAGXpshxKbXaTxRrrJ3qVMvstpnF1%2Ftm7XIPtlb4JSQnv9YvFd8VKUg%2BWwq5PThGymfLbk4Fmp60nxB32ef6QyG8tMAsCevyTaM2erF9uJLgIwjRkNCavjFRorMi%2BUE%2BMcF3DKQo2LNjD%2BWIBcepYKtgi5bCJQ3ar33qpmVyTMYzVoHZ0Dsz35ZK2spoLkJWwdvFvUuRaEyd%2FslnM0h0DKNBccRKxB3fBqShQD4LvWmvC6PH4evGGNVrF6%2FQAW%2BexN5z76hyg%3D%3D"
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