File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF788VOQ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF788VOQ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF788VOQ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF788VOQ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF788VOQ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF884NLJ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF884NLJ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF884NLJ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF884NLJ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF884NLJ.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.733M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.733M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.733M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.733M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.733M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.733M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.733M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.733M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.733M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.733M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.733M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.733M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF788VOQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.327M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF788VOQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.327M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF788VOQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.327M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF788VOQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.327M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF788VOQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.327M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF788VOQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.327M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF788VOQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.327M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF788VOQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.327M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF884NLJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.405M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF884NLJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.405M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF884NLJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.405M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF884NLJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.405M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF884NLJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.405M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF884NLJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.405M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF884NLJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.405M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF884NLJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.405M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.733M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.733M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.733M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF788VOQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.327M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF788VOQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.327M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF788VOQ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF788VOQ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF788VOQ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF788VOQ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF788VOQ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF788VOQ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF884NLJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.405M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF884NLJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.405M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF884NLJ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF884NLJ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF884NLJ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF884NLJ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF884NLJ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF884NLJ.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF788VOQ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.733M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.733M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 2523899135017609154 chip.macs2_signal_track_pooled 2446278007530115150 BW FC 2523899135017609154->2446278007530115150 8665860226547471305 BW p-val 2523899135017609154->8665860226547471305 -480474898378420330 chip.call_peak_pooled -6248688349006021159 Peak (bfilt) -480474898378420330->-6248688349006021159 1473707341324701283 Peak -480474898378420330->1473707341324701283 -2352585946689625650 chip.idr_ppr 1473707341324701283->-2352585946689625650 4302255155993873844 chip.idr 1473707341324701283->4302255155993873844 -8083625967301496688 chip.overlap 1473707341324701283->-8083625967301496688 1831347261581529631 chip.overlap_ppr 1473707341324701283->1831347261581529631 4903340613962810172 chip.pool_ta -2322523730498790643 TAG-ALIGN 4903340613962810172->-2322523730498790643 -2322523730498790643->2523899135017609154 -2322523730498790643->-480474898378420330 -2322523730498790643->-2352585946689625650 -2322523730498790643->4302255155993873844 -2322523730498790643->-8083625967301496688 -2322523730498790643->1831347261581529631 -4565939216328923185 chip.call_peak -9089900876754091384 Peak (bfilt) -4565939216328923185->-9089900876754091384 -7800581675487903208 Peak -4565939216328923185->-7800581675487903208 -7800581675487903208->4302255155993873844 -7800581675487903208->-8083625967301496688 6810805094488566327 chip.reproducibility_overlap -7800581675487903208->6810805094488566327 4006860476353744202 chip.reproducibility_idr -7800581675487903208->4006860476353744202 2708997458367429090 chip.bam2ta 396375312865391314 TAG-ALIGN 2708997458367429090->396375312865391314 396375312865391314->4903340613962810172 396375312865391314->-4565939216328923185 455883632433675716 chip.macs2_signal_track 396375312865391314->455883632433675716 396375312865391314->-2352585946689625650 396375312865391314->6810805094488566327 396375312865391314->4006860476353744202 396375312865391314->1831347261581529631 5926847627382620360 chip.filter 8551570327070322771 SAMstats QC 5926847627382620360->8551570327070322771 -2234467618170778775 Filt/deduped BAM 5926847627382620360->-2234467618170778775 -2150661177366523236 LibCmplx QC 5926847627382620360->-2150661177366523236 -2234467618170778775->2708997458367429090 5656650799906174252 chip.jsd -2234467618170778775->5656650799906174252 1793295419432460604 chip.align -6645913246830812021 SAMstats QC 1793295419432460604->-6645913246830812021 5959396013539478868 BAM 1793295419432460604->5959396013539478868 5959396013539478868->5926847627382620360 5774846479283949491 chip.xcor 4489815681320475197 XCOR Plot 5774846479283949491->4489815681320475197 7800920314426771368 BW FC 455883632433675716->7800920314426771368 -9033484545548852946 BW p-val 455883632433675716->-9033484545548852946 -1595504150733823289 FASTQ R1 (1) -1595504150733823289->1793295419432460604 -1595504150733823289->5774846479283949491 -988214982635553573 FASTQ R2 (1) -988214982635553573->1793295419432460604 3335624526960301052 chip.call_peak -3225887899427223789 Peak (bfilt) 3335624526960301052->-3225887899427223789 5321890084122723562 Peak 3335624526960301052->5321890084122723562 5321890084122723562->4302255155993873844 5321890084122723562->-8083625967301496688 5321890084122723562->6810805094488566327 5321890084122723562->4006860476353744202 -2925910649624330098 chip.bam2ta 4075899854399688894 TAG-ALIGN -2925910649624330098->4075899854399688894 4075899854399688894->4903340613962810172 4075899854399688894->3335624526960301052 3481891071061979705 chip.macs2_signal_track 4075899854399688894->3481891071061979705 4075899854399688894->-2352585946689625650 4075899854399688894->6810805094488566327 4075899854399688894->4006860476353744202 4075899854399688894->1831347261581529631 695148649405701127 chip.filter -7001713853009117887 SAMstats QC 695148649405701127->-7001713853009117887 7033050683682463214 Filt/deduped BAM 695148649405701127->7033050683682463214 163089700272608055 LibCmplx QC 695148649405701127->163089700272608055 7033050683682463214->-2925910649624330098 7033050683682463214->5656650799906174252 -8120283805720791031 chip.align -5757591686032238631 SAMstats QC -8120283805720791031->-5757591686032238631 6395743356827301231 BAM -8120283805720791031->6395743356827301231 6395743356827301231->695148649405701127 6423767169356191280 chip.xcor -566295729007924740 XCOR Plot 6423767169356191280->-566295729007924740 -4031392194653909227 BW FC 3481891071061979705->-4031392194653909227 -5905068204509304343 BW p-val 3481891071061979705->-5905068204509304343 585697202644199974 FASTQ R1 (1) 585697202644199974->-8120283805720791031 585697202644199974->6423767169356191280 8943358829424719276 FASTQ R2 (1) 8943358829424719276->-8120283805720791031 -4000838580365620767 chip.pool_ta_ctl 1945095730212137087 TAG-ALIGN -4000838580365620767->1945095730212137087 1945095730212137087->2523899135017609154 1945095730212137087->-480474898378420330 1945095730212137087->-4565939216328923185 1945095730212137087->455883632433675716 1945095730212137087->3335624526960301052 1945095730212137087->3481891071061979705 1945095730212137087->-2352585946689625650 1945095730212137087->6810805094488566327 1945095730212137087->4006860476353744202 1945095730212137087->1831347261581529631 -7813736716140420133 chip.bam2ta_ctl 5491907885628664682 TAG-ALIGN -7813736716140420133->5491907885628664682 5491907885628664682->-4000838580365620767 4688725609236268554 Filt/deduped BAM 4688725609236268554->-7813736716140420133 4688725609236268554->5656650799906174252 -4689024212513844004 chip.bam2ta_ctl 7028666140525861381 TAG-ALIGN -4689024212513844004->7028666140525861381 7028666140525861381->-4000838580365620767 -2628259200531447101 Filt/deduped BAM -2628259200531447101->-4689024212513844004 -2628259200531447101->5656650799906174252 4068087013828865147 chip.bam2ta_ctl -2964087774371402104 TAG-ALIGN 4068087013828865147->-2964087774371402104 -2964087774371402104->-4000838580365620767 -2283403924463075598 Filt/deduped BAM -2283403924463075598->4068087013828865147 -2283403924463075598->5656650799906174252 -1883352511546728185 chip.bam2ta_ctl -4333379563285769215 TAG-ALIGN -1883352511546728185->-4333379563285769215 -4333379563285769215->-4000838580365620767 2065596023946948946 Filt/deduped BAM 2065596023946948946->-1883352511546728185 2065596023946948946->5656650799906174252 -1193281104472025494 chip.bam2ta_ctl -4392288057533770511 TAG-ALIGN -1193281104472025494->-4392288057533770511 -4392288057533770511->-4000838580365620767 3098947483642584194 Filt/deduped BAM 3098947483642584194->-1193281104472025494 3098947483642584194->5656650799906174252 -2645004702625348799 chip.bam2ta_ctl -5721299067881443071 TAG-ALIGN -2645004702625348799->-5721299067881443071 -5721299067881443071->-4000838580365620767 -7076675303726056314 Filt/deduped BAM -7076675303726056314->-2645004702625348799 -7076675303726056314->5656650799906174252 -4312224720483259166 chip.bam2ta_ctl 585537542749846184 TAG-ALIGN -4312224720483259166->585537542749846184 585537542749846184->-4000838580365620767 -8300490712725845285 Filt/deduped BAM -8300490712725845285->-4312224720483259166 -8300490712725845285->5656650799906174252 8427532301409537530 chip.bam2ta_ctl 7828117309167943465 TAG-ALIGN 8427532301409537530->7828117309167943465 7828117309167943465->-4000838580365620767 5092697487723495463 Filt/deduped BAM 5092697487723495463->8427532301409537530 5092697487723495463->5656650799906174252 1861171570563474544 chip.bam2ta_ctl 3950152317061328907 TAG-ALIGN 1861171570563474544->3950152317061328907 3950152317061328907->-4000838580365620767 -8892656635071078978 Filt/deduped BAM -8892656635071078978->1861171570563474544 -8892656635071078978->5656650799906174252 -7122494827792878083 chip.bam2ta_ctl -4039805848123175719 TAG-ALIGN -7122494827792878083->-4039805848123175719 -4039805848123175719->-4000838580365620767 3277242714421195822 Filt/deduped BAM 3277242714421195822->-7122494827792878083 3277242714421195822->5656650799906174252 -1796836070140457467 chip.bam2ta_ctl -6155156479139942662 TAG-ALIGN -1796836070140457467->-6155156479139942662 -6155156479139942662->-4000838580365620767 5592868986671059274 Filt/deduped BAM 5592868986671059274->-1796836070140457467 5592868986671059274->5656650799906174252 -3579703671654396518 chip.bam2ta_ctl 4563340915650854220 TAG-ALIGN -3579703671654396518->4563340915650854220 4563340915650854220->-4000838580365620767 4085685695326292760 Filt/deduped BAM 4085685695326292760->-3579703671654396518 4085685695326292760->5656650799906174252 4286145751064933622 chip.bam2ta_ctl -8327309479313684932 TAG-ALIGN 4286145751064933622->-8327309479313684932 -8327309479313684932->-4000838580365620767 8605312684767592397 Filt/deduped BAM 8605312684767592397->4286145751064933622 8605312684767592397->5656650799906174252 -7711020351293827298 chip.bam2ta_ctl 3309915468498163730 TAG-ALIGN -7711020351293827298->3309915468498163730 3309915468498163730->-4000838580365620767 -950478006649420380 Filt/deduped BAM -950478006649420380->-7711020351293827298 -950478006649420380->5656650799906174252 -6429969738285278081 chip.bam2ta_ctl -8027424023301886811 TAG-ALIGN -6429969738285278081->-8027424023301886811 -8027424023301886811->-4000838580365620767 8648422759400213233 Filt/deduped BAM 8648422759400213233->-6429969738285278081 8648422759400213233->5656650799906174252 -8720231442039678187 chip.bam2ta_ctl 7937104162593686634 TAG-ALIGN -8720231442039678187->7937104162593686634 7937104162593686634->-4000838580365620767 -2753200604019047687 Filt/deduped BAM -2753200604019047687->-8720231442039678187 -2753200604019047687->5656650799906174252 1803865859658889173 chip.bam2ta_ctl 2188461429325015846 TAG-ALIGN 1803865859658889173->2188461429325015846 2188461429325015846->-4000838580365620767 6268324263143715756 Filt/deduped BAM 6268324263143715756->1803865859658889173 6268324263143715756->5656650799906174252 1349472711671172300 chip.bam2ta_ctl 962279284687275201 TAG-ALIGN 1349472711671172300->962279284687275201 962279284687275201->-4000838580365620767 -2109998851016316801 Filt/deduped BAM -2109998851016316801->1349472711671172300 -2109998851016316801->5656650799906174252 4992453064055326475 chip.bam2ta_ctl -4342027315370365009 TAG-ALIGN 4992453064055326475->-4342027315370365009 -4342027315370365009->-4000838580365620767 -5257908914865930217 Filt/deduped BAM -5257908914865930217->4992453064055326475 -5257908914865930217->5656650799906174252 4164202195949612347 chip.bam2ta_ctl 6095844730645489331 TAG-ALIGN 4164202195949612347->6095844730645489331 6095844730645489331->-4000838580365620767 -8370247964875673916 Filt/deduped BAM -8370247964875673916->4164202195949612347 -8370247964875673916->5656650799906174252 -6143096383225587579 chip.bam2ta_ctl -8276637210698600849 TAG-ALIGN -6143096383225587579->-8276637210698600849 -8276637210698600849->-4000838580365620767 -5222572416934470341 Filt/deduped BAM -5222572416934470341->-6143096383225587579 -5222572416934470341->5656650799906174252 1172888620778420902 chip.bam2ta_ctl 1766395120741194491 TAG-ALIGN 1172888620778420902->1766395120741194491 1766395120741194491->-4000838580365620767 5077193554790549363 Filt/deduped BAM 5077193554790549363->1172888620778420902 5077193554790549363->5656650799906174252 2964439926458976431 chip.bam2ta_ctl -8767928538599397012 TAG-ALIGN 2964439926458976431->-8767928538599397012 -8767928538599397012->-4000838580365620767 4423239565103943486 Filt/deduped BAM 4423239565103943486->2964439926458976431 4423239565103943486->5656650799906174252 -5683519938163557238 chip.bam2ta_ctl 6000472639613612840 TAG-ALIGN -5683519938163557238->6000472639613612840 6000472639613612840->-4000838580365620767 -2929206807545077072 Filt/deduped BAM -2929206807545077072->-5683519938163557238 -2929206807545077072->5656650799906174252 -912686891016982007 IDR Plot ppr -2352585946689625650->-912686891016982007 2043941663335000272 IDR Peak ppr -2352585946689625650->2043941663335000272 2043941663335000272->4006860476353744202 4121503452405954477 IDR Plot rep1_vs_rep2 4302255155993873844->4121503452405954477 7203487036752123151 IDR NPeak rep1_vs_rep2 4302255155993873844->7203487036752123151 7203487036752123151->4006860476353744202 6347200176811200475 Overlap Peak rep1_vs_rep2 -8083625967301496688->6347200176811200475 6347200176811200475->6810805094488566327 8690338417468139061 Overlap Peak optimal 6810805094488566327->8690338417468139061 -1154685237883855010 Overlap reproducibility 6810805094488566327->-1154685237883855010 3627585916823858185 IDR Peak optimal 4006860476353744202->3627585916823858185 -7357155650424950749 IDR reproducibility 4006860476353744202->-7357155650424950749 6920856733016063467 Overlap Peak ppr 1831347261581529631->6920856733016063467 6920856733016063467->6810805094488566327 6828756700713573253 JSD Plot 5656650799906174252->6828756700713573253

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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