File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF788VOQ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF788VOQ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF788VOQ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF788VOQ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF788VOQ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF884NLJ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF884NLJ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF884NLJ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF884NLJ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF884NLJ.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.733M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.733M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.733M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.733M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.733M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.733M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.733M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.733M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.733M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.733M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.733M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.733M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF788VOQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.327M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF788VOQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.327M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF788VOQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.327M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF788VOQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.327M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF788VOQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.327M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF788VOQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.327M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF788VOQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.327M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF788VOQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.327M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF884NLJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.405M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF884NLJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.405M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF884NLJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.405M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF884NLJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.405M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF884NLJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.405M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF884NLJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.405M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF884NLJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.405M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF884NLJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.405M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.733M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.733M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.733M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF788VOQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.327M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF788VOQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.327M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF788VOQ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF788VOQ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF788VOQ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF788VOQ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF788VOQ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF788VOQ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF884NLJ.crop_101-2bp.nodup.pr1_x_ctl.pooled.405M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF884NLJ.crop_101-2bp.nodup.pr2_x_ctl.pooled.405M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF884NLJ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF884NLJ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF884NLJ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF884NLJ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF884NLJ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF884NLJ.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-jsd/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF788VOQ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/184444f0-4e7d-4d45-be0c-41e508e60c4f/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.733M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.733M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF788VOQ.crop_101-2bp.nodup_x_ctl.pooled.327M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9d835230-fee9-4c70-a353-e36cc07a050e/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF884NLJ.crop_101-2bp.nodup_x_ctl.pooled.405M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 1304470560980315338 chip.macs2_signal_track_pooled 4127560271966084194 BW FC 1304470560980315338->4127560271966084194 376434241291090444 BW p-val 1304470560980315338->376434241291090444 1064333064568347533 chip.call_peak_pooled 4267557540905411580 Peak (bfilt) 1064333064568347533->4267557540905411580 4094941631290406228 Peak 1064333064568347533->4094941631290406228 -5343222435099459219 chip.idr_ppr 4094941631290406228->-5343222435099459219 8307115016771678581 chip.idr 4094941631290406228->8307115016771678581 321650085258934277 chip.overlap 4094941631290406228->321650085258934277 -8147722998316142611 chip.overlap_ppr 4094941631290406228->-8147722998316142611 -4104110405082857709 chip.pool_ta -8295331512505875876 TAG-ALIGN -4104110405082857709->-8295331512505875876 -8295331512505875876->1304470560980315338 -8295331512505875876->1064333064568347533 -8295331512505875876->-5343222435099459219 -8295331512505875876->8307115016771678581 -8295331512505875876->321650085258934277 -8295331512505875876->-8147722998316142611 7400948472892047705 chip.call_peak 4618166913486848805 Peak (bfilt) 7400948472892047705->4618166913486848805 -2208214283784465524 Peak 7400948472892047705->-2208214283784465524 -2208214283784465524->8307115016771678581 -2208214283784465524->321650085258934277 -2082238601583591501 chip.reproducibility_overlap -2208214283784465524->-2082238601583591501 -8158557258280309532 chip.reproducibility_idr -2208214283784465524->-8158557258280309532 -4765755895462059422 chip.bam2ta -3901027709751277197 TAG-ALIGN -4765755895462059422->-3901027709751277197 -3901027709751277197->-4104110405082857709 -3901027709751277197->7400948472892047705 -44668234135460367 chip.macs2_signal_track -3901027709751277197->-44668234135460367 -3901027709751277197->-5343222435099459219 -3901027709751277197->-2082238601583591501 -3901027709751277197->-8158557258280309532 -3901027709751277197->-8147722998316142611 -1340573233751180627 chip.filter 895550216510049516 SAMstats QC -1340573233751180627->895550216510049516 -60763665922514982 Filt/deduped BAM -1340573233751180627->-60763665922514982 4985967109905508357 LibCmplx QC -1340573233751180627->4985967109905508357 -60763665922514982->-4765755895462059422 -5744676548458965299 chip.jsd -60763665922514982->-5744676548458965299 -3610166794479913087 chip.align -5003746033969840005 SAMstats QC -3610166794479913087->-5003746033969840005 3870520275347670664 BAM -3610166794479913087->3870520275347670664 3870520275347670664->-1340573233751180627 2042250554962075144 chip.xcor 5483807022546615050 XCOR Plot 2042250554962075144->5483807022546615050 6796638392447557250 BW FC -44668234135460367->6796638392447557250 6342272838320036811 BW p-val -44668234135460367->6342272838320036811 6450575461211781770 FASTQ R1 (1) 6450575461211781770->-3610166794479913087 6450575461211781770->2042250554962075144 7654700429480729955 FASTQ R2 (1) 7654700429480729955->-3610166794479913087 -1837149199732191537 chip.call_peak 2980659379318705804 Peak (bfilt) -1837149199732191537->2980659379318705804 -763548247901335730 Peak -1837149199732191537->-763548247901335730 -763548247901335730->8307115016771678581 -763548247901335730->321650085258934277 -763548247901335730->-2082238601583591501 -763548247901335730->-8158557258280309532 -8935684696495461628 chip.bam2ta 7010002773736141136 TAG-ALIGN -8935684696495461628->7010002773736141136 7010002773736141136->-4104110405082857709 7010002773736141136->-1837149199732191537 5527721255677118376 chip.macs2_signal_track 7010002773736141136->5527721255677118376 7010002773736141136->-5343222435099459219 7010002773736141136->-2082238601583591501 7010002773736141136->-8158557258280309532 7010002773736141136->-8147722998316142611 -7981097332470708915 chip.filter 3306891925822146345 SAMstats QC -7981097332470708915->3306891925822146345 -3067686638612980498 Filt/deduped BAM -7981097332470708915->-3067686638612980498 4276534628814972972 LibCmplx QC -7981097332470708915->4276534628814972972 -3067686638612980498->-8935684696495461628 -3067686638612980498->-5744676548458965299 3437323286708348625 chip.align 5257067826096834976 SAMstats QC 3437323286708348625->5257067826096834976 -5880167447482359523 BAM 3437323286708348625->-5880167447482359523 -5880167447482359523->-7981097332470708915 8200110170374986532 chip.xcor -1674833729516619430 XCOR Plot 8200110170374986532->-1674833729516619430 4120607612200242530 BW FC 5527721255677118376->4120607612200242530 -5605022737234835970 BW p-val 5527721255677118376->-5605022737234835970 -310064812150839667 FASTQ R1 (1) -310064812150839667->3437323286708348625 -310064812150839667->8200110170374986532 -8940083230203761488 FASTQ R2 (1) -8940083230203761488->3437323286708348625 -7160338118339862579 chip.pool_ta_ctl -482368095149214827 TAG-ALIGN -7160338118339862579->-482368095149214827 -482368095149214827->1304470560980315338 -482368095149214827->1064333064568347533 -482368095149214827->7400948472892047705 -482368095149214827->-44668234135460367 -482368095149214827->-1837149199732191537 -482368095149214827->5527721255677118376 -482368095149214827->-5343222435099459219 -482368095149214827->-2082238601583591501 -482368095149214827->-8158557258280309532 -482368095149214827->-8147722998316142611 -8303568087115052259 chip.bam2ta_ctl -5324066269928764282 TAG-ALIGN -8303568087115052259->-5324066269928764282 -5324066269928764282->-7160338118339862579 6195564259625558715 Filt/deduped BAM 6195564259625558715->-8303568087115052259 6195564259625558715->-5744676548458965299 612747166210696779 chip.bam2ta_ctl -7788203857676798721 TAG-ALIGN 612747166210696779->-7788203857676798721 -7788203857676798721->-7160338118339862579 -2665935384477455459 Filt/deduped BAM -2665935384477455459->612747166210696779 -2665935384477455459->-5744676548458965299 8495220541047115721 chip.bam2ta_ctl 6112454241451355946 TAG-ALIGN 8495220541047115721->6112454241451355946 6112454241451355946->-7160338118339862579 2887125398995878625 Filt/deduped BAM 2887125398995878625->8495220541047115721 2887125398995878625->-5744676548458965299 482348465695451739 chip.bam2ta_ctl -5515210578823324819 TAG-ALIGN 482348465695451739->-5515210578823324819 -5515210578823324819->-7160338118339862579 2750016781249316525 Filt/deduped BAM 2750016781249316525->482348465695451739 2750016781249316525->-5744676548458965299 -2614245782328449664 chip.bam2ta_ctl -1114356049138115002 TAG-ALIGN -2614245782328449664->-1114356049138115002 -1114356049138115002->-7160338118339862579 4687355292805736802 Filt/deduped BAM 4687355292805736802->-2614245782328449664 4687355292805736802->-5744676548458965299 -1942023825214875425 chip.bam2ta_ctl 3137920738952867672 TAG-ALIGN -1942023825214875425->3137920738952867672 3137920738952867672->-7160338118339862579 -7590000198326501848 Filt/deduped BAM -7590000198326501848->-1942023825214875425 -7590000198326501848->-5744676548458965299 995173604181790909 chip.bam2ta_ctl -2994214462113329433 TAG-ALIGN 995173604181790909->-2994214462113329433 -2994214462113329433->-7160338118339862579 345545375875739454 Filt/deduped BAM 345545375875739454->995173604181790909 345545375875739454->-5744676548458965299 5340147466792342562 chip.bam2ta_ctl -5556008602394077978 TAG-ALIGN 5340147466792342562->-5556008602394077978 -5556008602394077978->-7160338118339862579 -1383491191091129967 Filt/deduped BAM -1383491191091129967->5340147466792342562 -1383491191091129967->-5744676548458965299 3470447890992958493 chip.bam2ta_ctl 2499682771398337420 TAG-ALIGN 3470447890992958493->2499682771398337420 2499682771398337420->-7160338118339862579 8704077453038484137 Filt/deduped BAM 8704077453038484137->3470447890992958493 8704077453038484137->-5744676548458965299 -3906915487749196567 chip.bam2ta_ctl 2045500486590792612 TAG-ALIGN -3906915487749196567->2045500486590792612 2045500486590792612->-7160338118339862579 1816203508703920202 Filt/deduped BAM 1816203508703920202->-3906915487749196567 1816203508703920202->-5744676548458965299 5388469172671422448 chip.bam2ta_ctl -1408663261348739526 TAG-ALIGN 5388469172671422448->-1408663261348739526 -1408663261348739526->-7160338118339862579 -2482062587640431348 Filt/deduped BAM -2482062587640431348->5388469172671422448 -2482062587640431348->-5744676548458965299 1449852110987250130 chip.bam2ta_ctl -2124362025735084164 TAG-ALIGN 1449852110987250130->-2124362025735084164 -2124362025735084164->-7160338118339862579 -6483529535132971561 Filt/deduped BAM -6483529535132971561->1449852110987250130 -6483529535132971561->-5744676548458965299 -1448760797025996780 chip.bam2ta_ctl -8176293682544407684 TAG-ALIGN -1448760797025996780->-8176293682544407684 -8176293682544407684->-7160338118339862579 -7159502827366276648 Filt/deduped BAM -7159502827366276648->-1448760797025996780 -7159502827366276648->-5744676548458965299 6064017498447905800 chip.bam2ta_ctl -3646157487197123065 TAG-ALIGN 6064017498447905800->-3646157487197123065 -3646157487197123065->-7160338118339862579 5329800402647460378 Filt/deduped BAM 5329800402647460378->6064017498447905800 5329800402647460378->-5744676548458965299 737550478325456621 chip.bam2ta_ctl -5971587677502950041 TAG-ALIGN 737550478325456621->-5971587677502950041 -5971587677502950041->-7160338118339862579 -3509280305146113146 Filt/deduped BAM -3509280305146113146->737550478325456621 -3509280305146113146->-5744676548458965299 8838052180990946466 chip.bam2ta_ctl -6885546541870925236 TAG-ALIGN 8838052180990946466->-6885546541870925236 -6885546541870925236->-7160338118339862579 844148248076078883 Filt/deduped BAM 844148248076078883->8838052180990946466 844148248076078883->-5744676548458965299 8228213618072414974 chip.bam2ta_ctl 7109992049405152422 TAG-ALIGN 8228213618072414974->7109992049405152422 7109992049405152422->-7160338118339862579 1322501362310014696 Filt/deduped BAM 1322501362310014696->8228213618072414974 1322501362310014696->-5744676548458965299 -2983197693810019117 chip.bam2ta_ctl 9184500634003924660 TAG-ALIGN -2983197693810019117->9184500634003924660 9184500634003924660->-7160338118339862579 -299095610525837652 Filt/deduped BAM -299095610525837652->-2983197693810019117 -299095610525837652->-5744676548458965299 -3563705330568916787 chip.bam2ta_ctl 4179495135503862517 TAG-ALIGN -3563705330568916787->4179495135503862517 4179495135503862517->-7160338118339862579 2791187249094546660 Filt/deduped BAM 2791187249094546660->-3563705330568916787 2791187249094546660->-5744676548458965299 8914353474922171842 chip.bam2ta_ctl 2316529940149924568 TAG-ALIGN 8914353474922171842->2316529940149924568 2316529940149924568->-7160338118339862579 6547081933584271059 Filt/deduped BAM 6547081933584271059->8914353474922171842 6547081933584271059->-5744676548458965299 -639462918220084383 chip.bam2ta_ctl -1369101509703937500 TAG-ALIGN -639462918220084383->-1369101509703937500 -1369101509703937500->-7160338118339862579 721537717495582257 Filt/deduped BAM 721537717495582257->-639462918220084383 721537717495582257->-5744676548458965299 -8523152094010363271 chip.bam2ta_ctl 863234437350611630 TAG-ALIGN -8523152094010363271->863234437350611630 863234437350611630->-7160338118339862579 -285508045076388240 Filt/deduped BAM -285508045076388240->-8523152094010363271 -285508045076388240->-5744676548458965299 7143160999428186440 chip.bam2ta_ctl 862413436436172672 TAG-ALIGN 7143160999428186440->862413436436172672 862413436436172672->-7160338118339862579 -2688169341823992506 Filt/deduped BAM -2688169341823992506->7143160999428186440 -2688169341823992506->-5744676548458965299 -6832309371241556771 chip.bam2ta_ctl 7414889555106905756 TAG-ALIGN -6832309371241556771->7414889555106905756 7414889555106905756->-7160338118339862579 5849497716363509380 Filt/deduped BAM 5849497716363509380->-6832309371241556771 5849497716363509380->-5744676548458965299 -5265348528982302496 IDR Plot ppr -5343222435099459219->-5265348528982302496 1961618841479063681 IDR Peak ppr -5343222435099459219->1961618841479063681 1961618841479063681->-8158557258280309532 5080810130060789393 IDR Plot rep1_vs_rep2 8307115016771678581->5080810130060789393 1038444955876847571 IDR NPeak rep1_vs_rep2 8307115016771678581->1038444955876847571 1038444955876847571->-8158557258280309532 8884803601159604549 Overlap Peak rep1_vs_rep2 321650085258934277->8884803601159604549 8884803601159604549->-2082238601583591501 -1218005833420011413 Overlap Peak optimal -2082238601583591501->-1218005833420011413 5024379531705546955 Overlap reproducibility -2082238601583591501->5024379531705546955 2191568415641537873 IDR Peak optimal -8158557258280309532->2191568415641537873 -3484108383111535202 IDR reproducibility -8158557258280309532->-3484108383111535202 -1956270531138966714 Overlap Peak ppr -8147722998316142611->-1956270531138966714 -1956270531138966714->-2082238601583591501 6609888415127191222 JSD Plot -5744676548458965299->6609888415127191222

UCSC browser tracks

UCSC browser tracks (if the above link does not work)

UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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