File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF480MVG.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF480MVG.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF480MVG.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF480MVG.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF480MVG.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF532GQH.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF532GQH.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF532GQH.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF532GQH.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF532GQH.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.590M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.590M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.590M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.590M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.590M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.590M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.590M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.590M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.590M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.590M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.590M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.590M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF480MVG.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF480MVG.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF480MVG.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF480MVG.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF480MVG.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF480MVG.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF480MVG.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF480MVG.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF480MVG.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF480MVG.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF480MVG.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF480MVG.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF532GQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.334M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF532GQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.334M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF532GQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.334M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF532GQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.334M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF532GQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.334M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF532GQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.334M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF532GQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.334M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF532GQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.334M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF532GQH.crop_101-2bp.nodup_x_ctl.pooled.334M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF532GQH.crop_101-2bp.nodup_x_ctl.pooled.334M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF532GQH.crop_101-2bp.nodup_x_ctl.pooled.334M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF532GQH.crop_101-2bp.nodup_x_ctl.pooled.334M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.590M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.590M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.590M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF480MVG.crop_101-2bp.nodup.pr1_x_ctl.pooled.255M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF480MVG.crop_101-2bp.nodup.pr2_x_ctl.pooled.255M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF480MVG.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF480MVG.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF480MVG.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF480MVG.crop_101-2bp.nodup_x_ctl.pooled.255M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF480MVG.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF480MVG.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF480MVG.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF532GQH.crop_101-2bp.nodup.pr1_x_ctl.pooled.334M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF532GQH.crop_101-2bp.nodup.pr2_x_ctl.pooled.334M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF532GQH.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF532GQH.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF532GQH.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF532GQH.crop_101-2bp.nodup_x_ctl.pooled.334M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF532GQH.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF532GQH.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF532GQH.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF480MVG.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/d4649aac-2b3b-4c3d-a965-5ab58b4da0af/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.590M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.590M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF480MVG.crop_101-2bp.nodup_x_ctl.pooled.255M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF480MVG.crop_101-2bp.nodup_x_ctl.pooled.255M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF532GQH.crop_101-2bp.nodup_x_ctl.pooled.334M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/9caf32f3-8e57-4abd-bf41-134e49d86004/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF532GQH.crop_101-2bp.nodup_x_ctl.pooled.334M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -3679752725279123265 chip.macs2_signal_track_pooled -6122279116121096214 BW FC -3679752725279123265->-6122279116121096214 8498904873244256886 BW p-val -3679752725279123265->8498904873244256886 -1591628645439924322 chip.call_peak_pooled -4360370613915920207 Peak (bfilt) -1591628645439924322->-4360370613915920207 4191568106331196396 Peak -1591628645439924322->4191568106331196396 4760486615038327705 chip.idr_ppr 4191568106331196396->4760486615038327705 -360386876841798716 chip.idr 4191568106331196396->-360386876841798716 2629582222016711033 chip.overlap 4191568106331196396->2629582222016711033 -436099297601009570 chip.overlap_ppr 4191568106331196396->-436099297601009570 -6828998005282425514 chip.pool_ta -1983059640266981004 TAG-ALIGN -6828998005282425514->-1983059640266981004 -1983059640266981004->-3679752725279123265 -1983059640266981004->-1591628645439924322 -1983059640266981004->4760486615038327705 -1983059640266981004->-360386876841798716 -1983059640266981004->2629582222016711033 -1983059640266981004->-436099297601009570 5101440951591181540 chip.call_peak -7328003541582703975 Peak (bfilt) 5101440951591181540->-7328003541582703975 -981177707293572319 Peak 5101440951591181540->-981177707293572319 -981177707293572319->-360386876841798716 -981177707293572319->2629582222016711033 8426220506154657216 chip.reproducibility_overlap -981177707293572319->8426220506154657216 -3351590555140319993 chip.reproducibility_idr -981177707293572319->-3351590555140319993 -6932906430202726268 chip.bam2ta 4665159252855218166 TAG-ALIGN -6932906430202726268->4665159252855218166 4665159252855218166->-6828998005282425514 4665159252855218166->5101440951591181540 2686332082363956335 chip.macs2_signal_track 4665159252855218166->2686332082363956335 4665159252855218166->4760486615038327705 4665159252855218166->8426220506154657216 4665159252855218166->-3351590555140319993 4665159252855218166->-436099297601009570 -2105025361089768760 chip.filter -3202339211089029392 SAMstats QC -2105025361089768760->-3202339211089029392 -4974033391723295475 Filt/deduped BAM -2105025361089768760->-4974033391723295475 -3936135767285670255 LibCmplx QC -2105025361089768760->-3936135767285670255 -4974033391723295475->-6932906430202726268 7884543631716887831 chip.jsd -4974033391723295475->7884543631716887831 6467350444294901432 chip.align 8251979499833559687 SAMstats QC 6467350444294901432->8251979499833559687 -3131664455679152561 BAM 6467350444294901432->-3131664455679152561 -3131664455679152561->-2105025361089768760 6915971136506512945 chip.xcor 5982661060589717435 XCOR Plot 6915971136506512945->5982661060589717435 8073052279183942298 BW FC 2686332082363956335->8073052279183942298 -569021733708081399 BW p-val 2686332082363956335->-569021733708081399 459889546899137952 FASTQ R1 (1) 459889546899137952->6467350444294901432 459889546899137952->6915971136506512945 8356328092021800796 FASTQ R2 (1) 8356328092021800796->6467350444294901432 -7878459120774184296 chip.call_peak 7611650983812885686 Peak (bfilt) -7878459120774184296->7611650983812885686 -2112190897119221481 Peak -7878459120774184296->-2112190897119221481 -2112190897119221481->-360386876841798716 -2112190897119221481->2629582222016711033 -2112190897119221481->8426220506154657216 -2112190897119221481->-3351590555140319993 -6629318273067311237 chip.bam2ta -3554547216270637240 TAG-ALIGN -6629318273067311237->-3554547216270637240 -3554547216270637240->-6828998005282425514 -3554547216270637240->-7878459120774184296 -5179792756402890397 chip.macs2_signal_track -3554547216270637240->-5179792756402890397 -3554547216270637240->4760486615038327705 -3554547216270637240->8426220506154657216 -3554547216270637240->-3351590555140319993 -3554547216270637240->-436099297601009570 9044208646104619428 chip.filter -4190215198311777750 SAMstats QC 9044208646104619428->-4190215198311777750 -5959615894947613213 Filt/deduped BAM 9044208646104619428->-5959615894947613213 -2352040157896653179 LibCmplx QC 9044208646104619428->-2352040157896653179 -5959615894947613213->-6629318273067311237 -5959615894947613213->7884543631716887831 -3264462993919964378 chip.align -1629186347652704966 SAMstats QC -3264462993919964378->-1629186347652704966 -982046136203148735 BAM -3264462993919964378->-982046136203148735 -982046136203148735->9044208646104619428 -3740343071144197546 chip.xcor 5157435805629025488 XCOR Plot -3740343071144197546->5157435805629025488 4801036399003652996 BW FC -5179792756402890397->4801036399003652996 -5121267798012366824 BW p-val -5179792756402890397->-5121267798012366824 3324077852010996740 FASTQ R1 (1) 3324077852010996740->-3264462993919964378 3324077852010996740->-3740343071144197546 8545597282245287511 FASTQ R2 (1) 8545597282245287511->-3264462993919964378 1856934645636904828 chip.pool_ta_ctl 8626495111752610827 TAG-ALIGN 1856934645636904828->8626495111752610827 8626495111752610827->-3679752725279123265 8626495111752610827->-1591628645439924322 8626495111752610827->5101440951591181540 8626495111752610827->2686332082363956335 8626495111752610827->-7878459120774184296 8626495111752610827->-5179792756402890397 8626495111752610827->4760486615038327705 8626495111752610827->8426220506154657216 8626495111752610827->-3351590555140319993 8626495111752610827->-436099297601009570 1484522439534965906 chip.bam2ta_ctl 8826539208071510564 TAG-ALIGN 1484522439534965906->8826539208071510564 8826539208071510564->1856934645636904828 4635913562702841137 Filt/deduped BAM 4635913562702841137->1484522439534965906 4635913562702841137->7884543631716887831 -3146361297153654205 chip.bam2ta_ctl 7637158591915860957 TAG-ALIGN -3146361297153654205->7637158591915860957 7637158591915860957->1856934645636904828 4162106516414295076 Filt/deduped BAM 4162106516414295076->-3146361297153654205 4162106516414295076->7884543631716887831 -5359795874831538598 chip.bam2ta_ctl 3832811352412814030 TAG-ALIGN -5359795874831538598->3832811352412814030 3832811352412814030->1856934645636904828 9137441008649794565 Filt/deduped BAM 9137441008649794565->-5359795874831538598 9137441008649794565->7884543631716887831 6791272460679396558 chip.bam2ta_ctl 503564197297389607 TAG-ALIGN 6791272460679396558->503564197297389607 503564197297389607->1856934645636904828 -1840364717224361339 Filt/deduped BAM -1840364717224361339->6791272460679396558 -1840364717224361339->7884543631716887831 4180312636099865831 chip.bam2ta_ctl -6077855040240956198 TAG-ALIGN 4180312636099865831->-6077855040240956198 -6077855040240956198->1856934645636904828 -1069311175447423790 Filt/deduped BAM -1069311175447423790->4180312636099865831 -1069311175447423790->7884543631716887831 219126095628939298 chip.bam2ta_ctl 8468880093296652058 TAG-ALIGN 219126095628939298->8468880093296652058 8468880093296652058->1856934645636904828 -3165813307274129900 Filt/deduped BAM -3165813307274129900->219126095628939298 -3165813307274129900->7884543631716887831 -5660404851403988315 chip.bam2ta_ctl -8748828787880370914 TAG-ALIGN -5660404851403988315->-8748828787880370914 -8748828787880370914->1856934645636904828 8245062465495069386 Filt/deduped BAM 8245062465495069386->-5660404851403988315 8245062465495069386->7884543631716887831 412686323448442097 chip.bam2ta_ctl -5384951186502315417 TAG-ALIGN 412686323448442097->-5384951186502315417 -5384951186502315417->1856934645636904828 -4726189884149177502 Filt/deduped BAM -4726189884149177502->412686323448442097 -4726189884149177502->7884543631716887831 7423209494824031092 chip.bam2ta_ctl 6129895121287479486 TAG-ALIGN 7423209494824031092->6129895121287479486 6129895121287479486->1856934645636904828 6182088756140401577 Filt/deduped BAM 6182088756140401577->7423209494824031092 6182088756140401577->7884543631716887831 582505595421450878 chip.bam2ta_ctl 7107323181630115395 TAG-ALIGN 582505595421450878->7107323181630115395 7107323181630115395->1856934645636904828 1514041559140137111 Filt/deduped BAM 1514041559140137111->582505595421450878 1514041559140137111->7884543631716887831 -4266741225631339402 chip.bam2ta_ctl -6510858953313217615 TAG-ALIGN -4266741225631339402->-6510858953313217615 -6510858953313217615->1856934645636904828 2265212359713257744 Filt/deduped BAM 2265212359713257744->-4266741225631339402 2265212359713257744->7884543631716887831 -7059878040987774853 chip.bam2ta_ctl -1352860596807601684 TAG-ALIGN -7059878040987774853->-1352860596807601684 -1352860596807601684->1856934645636904828 -7496025436425754031 Filt/deduped BAM -7496025436425754031->-7059878040987774853 -7496025436425754031->7884543631716887831 5062496184734071160 chip.bam2ta_ctl -256970434487091818 TAG-ALIGN 5062496184734071160->-256970434487091818 -256970434487091818->1856934645636904828 -5443186078819974255 Filt/deduped BAM -5443186078819974255->5062496184734071160 -5443186078819974255->7884543631716887831 910923667180863237 chip.bam2ta_ctl -4015288270858630935 TAG-ALIGN 910923667180863237->-4015288270858630935 -4015288270858630935->1856934645636904828 3673431714256731366 Filt/deduped BAM 3673431714256731366->910923667180863237 3673431714256731366->7884543631716887831 8925493397791465410 chip.bam2ta_ctl -5633550010064791801 TAG-ALIGN 8925493397791465410->-5633550010064791801 -5633550010064791801->1856934645636904828 3738351776531854370 Filt/deduped BAM 3738351776531854370->8925493397791465410 3738351776531854370->7884543631716887831 -6221758180253015347 chip.bam2ta_ctl 1577357517485222116 TAG-ALIGN -6221758180253015347->1577357517485222116 1577357517485222116->1856934645636904828 -6486789357569204893 Filt/deduped BAM -6486789357569204893->-6221758180253015347 -6486789357569204893->7884543631716887831 -3225899098983225092 chip.bam2ta_ctl 2841637388531252191 TAG-ALIGN -3225899098983225092->2841637388531252191 2841637388531252191->1856934645636904828 -2957433794117422558 Filt/deduped BAM -2957433794117422558->-3225899098983225092 -2957433794117422558->7884543631716887831 -6911518089886189912 chip.bam2ta_ctl 8135067421254084048 TAG-ALIGN -6911518089886189912->8135067421254084048 8135067421254084048->1856934645636904828 -5175981283208915732 Filt/deduped BAM -5175981283208915732->-6911518089886189912 -5175981283208915732->7884543631716887831 6142374091064256617 chip.bam2ta_ctl -975498577556589452 TAG-ALIGN 6142374091064256617->-975498577556589452 -975498577556589452->1856934645636904828 3888303269743289796 Filt/deduped BAM 3888303269743289796->6142374091064256617 3888303269743289796->7884543631716887831 -364097196762412557 chip.bam2ta_ctl -461923604536692696 TAG-ALIGN -364097196762412557->-461923604536692696 -461923604536692696->1856934645636904828 -3508322273715176571 Filt/deduped BAM -3508322273715176571->-364097196762412557 -3508322273715176571->7884543631716887831 3645965645431050160 chip.bam2ta_ctl -3403154952434128580 TAG-ALIGN 3645965645431050160->-3403154952434128580 -3403154952434128580->1856934645636904828 6441119477539913491 Filt/deduped BAM 6441119477539913491->3645965645431050160 6441119477539913491->7884543631716887831 -1943413119198712270 chip.bam2ta_ctl 5841038370125972070 TAG-ALIGN -1943413119198712270->5841038370125972070 5841038370125972070->1856934645636904828 5129164678520432240 Filt/deduped BAM 5129164678520432240->-1943413119198712270 5129164678520432240->7884543631716887831 1737518049830214265 chip.bam2ta_ctl 3443513902028947920 TAG-ALIGN 1737518049830214265->3443513902028947920 3443513902028947920->1856934645636904828 -4114757253766995700 Filt/deduped BAM -4114757253766995700->1737518049830214265 -4114757253766995700->7884543631716887831 -1563439877449674015 chip.bam2ta_ctl -1429008769245569539 TAG-ALIGN -1563439877449674015->-1429008769245569539 -1429008769245569539->1856934645636904828 -8661106049876252604 Filt/deduped BAM -8661106049876252604->-1563439877449674015 -8661106049876252604->7884543631716887831 6997373905188626066 IDR Plot ppr 4760486615038327705->6997373905188626066 -6769661167506556040 IDR Peak ppr 4760486615038327705->-6769661167506556040 -6769661167506556040->-3351590555140319993 1302511145931707548 IDR Plot rep1_vs_rep2 -360386876841798716->1302511145931707548 3696588941379276489 IDR NPeak rep1_vs_rep2 -360386876841798716->3696588941379276489 3696588941379276489->-3351590555140319993 4582453211349901462 Overlap Peak rep1_vs_rep2 2629582222016711033->4582453211349901462 4582453211349901462->8426220506154657216 7029073486557687541 Overlap Peak optimal 8426220506154657216->7029073486557687541 -2583272750711141445 Overlap reproducibility 8426220506154657216->-2583272750711141445 446008455193254838 IDR Peak optimal -3351590555140319993->446008455193254838 -3971247007375534975 IDR reproducibility -3351590555140319993->-3971247007375534975 -3573810453732805735 Overlap Peak ppr -436099297601009570->-3573810453732805735 -3573810453732805735->8426220506154657216 -4633344643793647838 JSD Plot 7884543631716887831->-4633344643793647838

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