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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF456XDQ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF456XDQ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF456XDQ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF456XDQ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF456XDQ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF454CBQ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF454CBQ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF454CBQ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF454CBQ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF454CBQ.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.regionPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.regionPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.regionPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.regionPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.regionPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.regionPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.regionPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap_ppr/glob-dab68893df43168f2b301266b4498136/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap_ppr/glob-6d5ecccaf6ecff88ff547bad03a90af6/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap_ppr/glob-c71d4cca8627aab27dc3503b7db7a39d/pooled-pr1_vs_pooled-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_ppr1/glob-dab68893df43168f2b301266b4498136/rep-pr1.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_ppr1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr1.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_ppr1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr1.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_ppr1/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr1.pooled_x_ctl.pooled.539M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_ppr2/glob-dab68893df43168f2b301266b4498136/rep-pr2.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_ppr2/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep-pr2.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_ppr2/glob-c71d4cca8627aab27dc3503b7db7a39d/rep-pr2.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_ppr2/glob-3c17d82667de5da0b56a7c17d88175d2/rep-pr2.pooled_x_ctl.pooled.539M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pooled/glob-dab68893df43168f2b301266b4498136/rep.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pooled/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pooled/glob-c71d4cca8627aab27dc3503b7db7a39d/rep.pooled_x_ctl.pooled.539M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pooled/glob-3c17d82667de5da0b56a7c17d88175d2/rep.pooled_x_ctl.pooled.539M.300K.regionPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap/shard-1/glob-dab68893df43168f2b301266b4498136/rep1_vs_rep2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1_vs_rep2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1_vs_rep2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap_pr/shard-0/glob-dab68893df43168f2b301266b4498136/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap_pr/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap_pr/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/rep1-pr1_vs_rep1-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr1/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF456XDQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr1/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF456XDQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr1/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF456XDQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr1/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF456XDQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr2/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF456XDQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr2/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF456XDQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr2/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF456XDQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr2/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF456XDQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak/shard-0/glob-dab68893df43168f2b301266b4498136/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak/shard-0/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak/shard-0/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak/shard-0/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.300K.regionPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.regionPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap_pr/shard-1/glob-dab68893df43168f2b301266b4498136/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap_pr/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap_pr/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/rep2-pr1_vs_rep2-pr2.overlap.bfilt.regionPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr1/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF454CBQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr1/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF454CBQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr1/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF454CBQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr1/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF454CBQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.regionPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr2/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF454CBQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr2/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF454CBQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr2/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF454CBQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr2/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF454CBQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.regionPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak/shard-1/glob-dab68893df43168f2b301266b4498136/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.bfilt.regionPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak/shard-1/glob-6d5ecccaf6ecff88ff547bad03a90af6/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.bfilt.regionPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak/shard-1/glob-c71d4cca8627aab27dc3503b7db7a39d/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.bfilt.regionPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak/shard-1/glob-3c17d82667de5da0b56a7c17d88175d2/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.regionPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.539M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.539M.300K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.539M.300K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF456XDQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF456XDQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF456XDQ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF456XDQ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF456XDQ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF456XDQ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF456XDQ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF456XDQ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF454CBQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.300K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF454CBQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.300K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF454CBQ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF454CBQ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF454CBQ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.300K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF454CBQ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF454CBQ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF454CBQ.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF456XDQ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.539M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.539M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -6012476273914379272 chip.macs2_signal_track_pooled 3657829851719802351 BW FC -6012476273914379272->3657829851719802351 682986327159975802 BW p-val -6012476273914379272->682986327159975802 -6676264078579824390 chip.call_peak_pooled 1780579640702681009 Peak (bfilt) -6676264078579824390->1780579640702681009 4560156847034641468 Peak -6676264078579824390->4560156847034641468 1540845472274351023 chip.idr_ppr 4560156847034641468->1540845472274351023 208430250646500823 chip.idr 4560156847034641468->208430250646500823 -6508460752371691267 chip.overlap 4560156847034641468->-6508460752371691267 -4357844005363778820 chip.overlap_ppr 4560156847034641468->-4357844005363778820 5159874580230494317 chip.pool_ta 6555306323719563512 TAG-ALIGN 5159874580230494317->6555306323719563512 6555306323719563512->-6012476273914379272 6555306323719563512->-6676264078579824390 6555306323719563512->1540845472274351023 6555306323719563512->208430250646500823 6555306323719563512->-6508460752371691267 6555306323719563512->-4357844005363778820 -7652901069284996063 chip.call_peak 6003885689653078932 Peak (bfilt) -7652901069284996063->6003885689653078932 -5120627884618983629 Peak -7652901069284996063->-5120627884618983629 -5120627884618983629->208430250646500823 -5120627884618983629->-6508460752371691267 -8321337373068617978 chip.reproducibility_overlap -5120627884618983629->-8321337373068617978 1057911928093977535 chip.reproducibility_idr -5120627884618983629->1057911928093977535 6108168177568738151 chip.bam2ta -3598948635871352552 TAG-ALIGN 6108168177568738151->-3598948635871352552 -3598948635871352552->5159874580230494317 -3598948635871352552->-7652901069284996063 -4738989304361179998 chip.macs2_signal_track -3598948635871352552->-4738989304361179998 -3598948635871352552->1540845472274351023 -3598948635871352552->-8321337373068617978 -3598948635871352552->1057911928093977535 -3598948635871352552->-4357844005363778820 -8558173455354235249 chip.filter -6196777709664405847 SAMstats QC -8558173455354235249->-6196777709664405847 1005059614054925452 Filt/deduped BAM -8558173455354235249->1005059614054925452 -2619360944568085105 LibCmplx QC -8558173455354235249->-2619360944568085105 1005059614054925452->6108168177568738151 1960657043018342817 chip.jsd 1005059614054925452->1960657043018342817 -6091407262370937810 chip.jsd 1005059614054925452->-6091407262370937810 -8033928141053802289 chip.align 1402988385764576301 SAMstats QC -8033928141053802289->1402988385764576301 -5150692197628188520 BAM -8033928141053802289->-5150692197628188520 -5150692197628188520->-8558173455354235249 1702997174257832979 chip.xcor -7890786004442088726 XCOR Plot 1702997174257832979->-7890786004442088726 -5399646011855127221 BW FC -4738989304361179998->-5399646011855127221 5724919328686742213 BW p-val -4738989304361179998->5724919328686742213 -2892995877438950423 FASTQ R1 (1) -2892995877438950423->-8033928141053802289 -2892995877438950423->1702997174257832979 3500452693931012149 FASTQ R2 (1) 3500452693931012149->-8033928141053802289 -3374693911149085356 chip.call_peak -3258580437110554502 Peak (bfilt) -3374693911149085356->-3258580437110554502 3873556581226998554 Peak -3374693911149085356->3873556581226998554 3873556581226998554->208430250646500823 3873556581226998554->-6508460752371691267 3873556581226998554->-8321337373068617978 3873556581226998554->1057911928093977535 -8359712919067817943 chip.bam2ta -695907262761410256 TAG-ALIGN -8359712919067817943->-695907262761410256 -695907262761410256->5159874580230494317 -695907262761410256->-3374693911149085356 1637938276783136899 chip.macs2_signal_track -695907262761410256->1637938276783136899 -695907262761410256->1540845472274351023 -695907262761410256->-8321337373068617978 -695907262761410256->1057911928093977535 -695907262761410256->-4357844005363778820 7525412205028815870 chip.filter -1743139223736871955 SAMstats QC 7525412205028815870->-1743139223736871955 -8086043457685419427 Filt/deduped BAM 7525412205028815870->-8086043457685419427 4017518095398333616 LibCmplx QC 7525412205028815870->4017518095398333616 -8086043457685419427->-8359712919067817943 -8086043457685419427->1960657043018342817 -8086043457685419427->-6091407262370937810 5408220785318782872 chip.align 2336852485997813129 SAMstats QC 5408220785318782872->2336852485997813129 -3437217341013059205 BAM 5408220785318782872->-3437217341013059205 -3437217341013059205->7525412205028815870 8646833937198536486 chip.xcor 6432763748531484032 XCOR Plot 8646833937198536486->6432763748531484032 1692774037415005661 BW FC 1637938276783136899->1692774037415005661 1621482211983170765 BW p-val 1637938276783136899->1621482211983170765 3745164884465978936 FASTQ R1 (1) 3745164884465978936->5408220785318782872 3745164884465978936->8646833937198536486 -3698193456405655607 FASTQ R2 (1) -3698193456405655607->5408220785318782872 7897210318988887803 chip.pool_ta_ctl 7008045826276283502 TAG-ALIGN 7897210318988887803->7008045826276283502 7008045826276283502->-6012476273914379272 7008045826276283502->-6676264078579824390 7008045826276283502->-7652901069284996063 7008045826276283502->-4738989304361179998 7008045826276283502->-3374693911149085356 7008045826276283502->1637938276783136899 7008045826276283502->1540845472274351023 7008045826276283502->-8321337373068617978 7008045826276283502->1057911928093977535 7008045826276283502->-4357844005363778820 -3989807264623810596 chip.bam2ta_ctl 3296045846479725870 TAG-ALIGN -3989807264623810596->3296045846479725870 3296045846479725870->7897210318988887803 3278122801676078433 Filt/deduped BAM 3278122801676078433->-3989807264623810596 3278122801676078433->1960657043018342817 3278122801676078433->-6091407262370937810 -1787978582503288808 chip.bam2ta_ctl 2623254938115049444 TAG-ALIGN -1787978582503288808->2623254938115049444 2623254938115049444->7897210318988887803 -6231749277686355756 Filt/deduped BAM -6231749277686355756->-1787978582503288808 -6231749277686355756->1960657043018342817 -6231749277686355756->-6091407262370937810 323304506222318785 chip.bam2ta_ctl 7875506435644267100 TAG-ALIGN 323304506222318785->7875506435644267100 7875506435644267100->7897210318988887803 3570224769258329852 Filt/deduped BAM 3570224769258329852->323304506222318785 3570224769258329852->1960657043018342817 3570224769258329852->-6091407262370937810 3853013902496560806 chip.bam2ta_ctl 4713848459432527472 TAG-ALIGN 3853013902496560806->4713848459432527472 4713848459432527472->7897210318988887803 -1955354011241607184 Filt/deduped BAM -1955354011241607184->3853013902496560806 -1955354011241607184->1960657043018342817 -1955354011241607184->-6091407262370937810 6842535774367139046 chip.bam2ta_ctl 7255455278578720728 TAG-ALIGN 6842535774367139046->7255455278578720728 7255455278578720728->7897210318988887803 -7579331366786974239 Filt/deduped BAM -7579331366786974239->6842535774367139046 -7579331366786974239->1960657043018342817 -7579331366786974239->-6091407262370937810 7869430219549533725 chip.bam2ta_ctl 722023288815745802 TAG-ALIGN 7869430219549533725->722023288815745802 722023288815745802->7897210318988887803 6612607729022899243 Filt/deduped BAM 6612607729022899243->7869430219549533725 6612607729022899243->1960657043018342817 6612607729022899243->-6091407262370937810 5431846559316541181 chip.bam2ta_ctl -143017356501784527 TAG-ALIGN 5431846559316541181->-143017356501784527 -143017356501784527->7897210318988887803 -583253022242248221 Filt/deduped BAM -583253022242248221->5431846559316541181 -583253022242248221->1960657043018342817 -583253022242248221->-6091407262370937810 7338477542397545743 chip.bam2ta_ctl -316739727643295250 TAG-ALIGN 7338477542397545743->-316739727643295250 -316739727643295250->7897210318988887803 7610497988605173783 Filt/deduped BAM 7610497988605173783->7338477542397545743 7610497988605173783->1960657043018342817 7610497988605173783->-6091407262370937810 -5394450165786098343 chip.bam2ta_ctl 111235112139548972 TAG-ALIGN -5394450165786098343->111235112139548972 111235112139548972->7897210318988887803 62231070627755154 Filt/deduped BAM 62231070627755154->-5394450165786098343 62231070627755154->1960657043018342817 62231070627755154->-6091407262370937810 8621329528775214283 chip.bam2ta_ctl 643232349269550175 TAG-ALIGN 8621329528775214283->643232349269550175 643232349269550175->7897210318988887803 -1876624015466794122 Filt/deduped BAM -1876624015466794122->8621329528775214283 -1876624015466794122->1960657043018342817 -1876624015466794122->-6091407262370937810 4829079999806710852 chip.bam2ta_ctl 8530344403732465636 TAG-ALIGN 4829079999806710852->8530344403732465636 8530344403732465636->7897210318988887803 -8513009284777619947 Filt/deduped BAM -8513009284777619947->4829079999806710852 -8513009284777619947->1960657043018342817 -8513009284777619947->-6091407262370937810 -2128717770473618326 chip.bam2ta_ctl 3986199944643596201 TAG-ALIGN -2128717770473618326->3986199944643596201 3986199944643596201->7897210318988887803 1344122501862711315 Filt/deduped BAM 1344122501862711315->-2128717770473618326 1344122501862711315->1960657043018342817 1344122501862711315->-6091407262370937810 -2567737887917417932 chip.bam2ta_ctl -2044953018166713826 TAG-ALIGN -2567737887917417932->-2044953018166713826 -2044953018166713826->7897210318988887803 -3894624037965948275 Filt/deduped BAM -3894624037965948275->-2567737887917417932 -3894624037965948275->1960657043018342817 -3894624037965948275->-6091407262370937810 -8671138486862842609 chip.bam2ta_ctl -6529967699843378533 TAG-ALIGN -8671138486862842609->-6529967699843378533 -6529967699843378533->7897210318988887803 8904849986151787570 Filt/deduped BAM 8904849986151787570->-8671138486862842609 8904849986151787570->1960657043018342817 8904849986151787570->-6091407262370937810 -5591680729620353409 chip.bam2ta_ctl -9043056877281238600 TAG-ALIGN -5591680729620353409->-9043056877281238600 -9043056877281238600->7897210318988887803 -8344510572878627930 Filt/deduped BAM -8344510572878627930->-5591680729620353409 -8344510572878627930->1960657043018342817 -8344510572878627930->-6091407262370937810 8083315037739066093 chip.bam2ta_ctl 6901378793510143979 TAG-ALIGN 8083315037739066093->6901378793510143979 6901378793510143979->7897210318988887803 306123973933818290 Filt/deduped BAM 306123973933818290->8083315037739066093 306123973933818290->1960657043018342817 306123973933818290->-6091407262370937810 3151307977862687062 chip.bam2ta_ctl 2421491385396326744 TAG-ALIGN 3151307977862687062->2421491385396326744 2421491385396326744->7897210318988887803 -1821914491370554347 Filt/deduped BAM -1821914491370554347->3151307977862687062 -1821914491370554347->1960657043018342817 -1821914491370554347->-6091407262370937810 -2877024981687970258 chip.bam2ta_ctl -4550731396096242073 TAG-ALIGN -2877024981687970258->-4550731396096242073 -4550731396096242073->7897210318988887803 166969502231943007 Filt/deduped BAM 166969502231943007->-2877024981687970258 166969502231943007->1960657043018342817 166969502231943007->-6091407262370937810 -2134472775167106551 chip.bam2ta_ctl 6049605082798593110 TAG-ALIGN -2134472775167106551->6049605082798593110 6049605082798593110->7897210318988887803 -6948864658954201330 Filt/deduped BAM -6948864658954201330->-2134472775167106551 -6948864658954201330->1960657043018342817 -6948864658954201330->-6091407262370937810 7130548796599834383 chip.bam2ta_ctl -8229243193616657812 TAG-ALIGN 7130548796599834383->-8229243193616657812 -8229243193616657812->7897210318988887803 880236703814249405 Filt/deduped BAM 880236703814249405->7130548796599834383 880236703814249405->1960657043018342817 880236703814249405->-6091407262370937810 91154256730762555 chip.bam2ta_ctl 4237897931544395223 TAG-ALIGN 91154256730762555->4237897931544395223 4237897931544395223->7897210318988887803 -5512315831941602379 Filt/deduped BAM -5512315831941602379->91154256730762555 -5512315831941602379->1960657043018342817 -5512315831941602379->-6091407262370937810 3018003914287577918 chip.bam2ta_ctl -254843045710784047 TAG-ALIGN 3018003914287577918->-254843045710784047 -254843045710784047->7897210318988887803 -2803058065089002399 Filt/deduped BAM -2803058065089002399->3018003914287577918 -2803058065089002399->1960657043018342817 -2803058065089002399->-6091407262370937810 -1207728446682979954 chip.bam2ta_ctl 1432236114860499495 TAG-ALIGN -1207728446682979954->1432236114860499495 1432236114860499495->7897210318988887803 -551875196989555642 Filt/deduped BAM -551875196989555642->-1207728446682979954 -551875196989555642->1960657043018342817 -551875196989555642->-6091407262370937810 5970728670033754178 chip.bam2ta_ctl 1896147697182311611 TAG-ALIGN 5970728670033754178->1896147697182311611 1896147697182311611->7897210318988887803 -1892408830207872687 Filt/deduped BAM -1892408830207872687->5970728670033754178 -1892408830207872687->1960657043018342817 -1892408830207872687->-6091407262370937810 1902433397623728777 IDR Plot ppr 1540845472274351023->1902433397623728777 -1060017566475746102 IDR Peak ppr 1540845472274351023->-1060017566475746102 -1060017566475746102->1057911928093977535 7870532958662343507 IDR Plot rep1_vs_rep2 208430250646500823->7870532958662343507 5873808420182193486 IDR NPeak rep1_vs_rep2 208430250646500823->5873808420182193486 5873808420182193486->1057911928093977535 -4520423651385084639 Overlap Peak rep1_vs_rep2 -6508460752371691267->-4520423651385084639 -4520423651385084639->-8321337373068617978 -7593306908969154038 Overlap Peak optimal -8321337373068617978->-7593306908969154038 8222369906471159445 Overlap reproducibility -8321337373068617978->8222369906471159445 -3572496688538193503 IDR Peak optimal 1057911928093977535->-3572496688538193503 7963375703875428842 IDR reproducibility 1057911928093977535->7963375703875428842 3885912782358519494 Overlap Peak ppr -4357844005363778820->3885912782358519494 3885912782358519494->-8321337373068617978 -8235082795201411350 JSD Plot 1960657043018342817->-8235082795201411350 -6091407262370937810->-8235082795201411350

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