File table
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FilesPath
Alignment
Control 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF585IQN.tagAlign.gz
Control 10
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-9/glob-199637d3015dccbe277f621a18be9eb4/ENCFF919EDN.tagAlign.gz
Control 11
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-10/glob-199637d3015dccbe277f621a18be9eb4/ENCFF489ERC.tagAlign.gz
Control 12
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-11/glob-199637d3015dccbe277f621a18be9eb4/ENCFF533HJT.tagAlign.gz
Control 13
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-12/glob-199637d3015dccbe277f621a18be9eb4/ENCFF451CVJ.tagAlign.gz
Control 14
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-13/glob-199637d3015dccbe277f621a18be9eb4/ENCFF383QIP.tagAlign.gz
Control 15
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-14/glob-199637d3015dccbe277f621a18be9eb4/ENCFF905YEA.tagAlign.gz
Control 16
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-15/glob-199637d3015dccbe277f621a18be9eb4/ENCFF785BTW.tagAlign.gz
Control 17
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-16/glob-199637d3015dccbe277f621a18be9eb4/ENCFF709TVD.tagAlign.gz
Control 18
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-17/glob-199637d3015dccbe277f621a18be9eb4/ENCFF928CJD.tagAlign.gz
Control 19
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-18/glob-199637d3015dccbe277f621a18be9eb4/ENCFF528DFI.tagAlign.gz
Control 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF847EHD.tagAlign.gz
Control 20
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-19/glob-199637d3015dccbe277f621a18be9eb4/ENCFF482RWP.tagAlign.gz
Control 21
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-20/glob-199637d3015dccbe277f621a18be9eb4/ENCFF736OSY.tagAlign.gz
Control 22
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-21/glob-199637d3015dccbe277f621a18be9eb4/ENCFF490JCT.tagAlign.gz
Control 23
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-22/glob-199637d3015dccbe277f621a18be9eb4/ENCFF856XMU.tagAlign.gz
Control 24
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-23/glob-199637d3015dccbe277f621a18be9eb4/ENCFF949NGG.tagAlign.gz
Control 3
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-2/glob-199637d3015dccbe277f621a18be9eb4/ENCFF800IMV.tagAlign.gz
Control 4
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-3/glob-199637d3015dccbe277f621a18be9eb4/ENCFF190AZK.tagAlign.gz
Control 5
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-4/glob-199637d3015dccbe277f621a18be9eb4/ENCFF500XPF.tagAlign.gz
Control 6
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-5/glob-199637d3015dccbe277f621a18be9eb4/ENCFF654JHZ.tagAlign.gz
Control 7
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-6/glob-199637d3015dccbe277f621a18be9eb4/ENCFF065LBX.tagAlign.gz
Control 8
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/bafc5cac-d8ee-4733-a250-790bee628b7c/call-bam2ta_ctl/shard-7/glob-199637d3015dccbe277f621a18be9eb4/ENCFF425NTG.tagAlign.gz
Control 9
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-bam2ta_ctl/shard-8/glob-199637d3015dccbe277f621a18be9eb4/ENCFF705BZZ.tagAlign.gz
Pooled control
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/d1d58f91-c596-4a49-aa5c-1993eac96a9b/call-pool_ta_ctl/glob-199637d3015dccbe277f621a18be9eb4/ctl.pooled.tagAlign.gz
Pooled replicate
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-pool_ta_pr1/glob-199637d3015dccbe277f621a18be9eb4/rep-pr1.pooled.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-pool_ta_pr2/glob-199637d3015dccbe277f621a18be9eb4/rep-pr2.pooled.tagAlign.gz
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-pool_ta/glob-199637d3015dccbe277f621a18be9eb4/rep.pooled.tagAlign.gz
Replicate 1
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-spr/shard-0/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF456XDQ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-spr/shard-0/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF456XDQ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF456XDQ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-align/shard-0/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF456XDQ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-bam2ta/shard-0/glob-199637d3015dccbe277f621a18be9eb4/ENCFF456XDQ.crop_101-2bp.nodup.tagAlign.gz
Replicate 2
Pseudoreplicate 1
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-spr/shard-1/glob-478c0ad30d0d033ce59a75ef84dab32e/ENCFF454CBQ.crop_101-2bp.nodup.pr1.tagAlign.gz
Pseudoreplicate 2
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-spr/shard-1/glob-a7cc663e5a8a49cc3d9bc036f4370f1c/ENCFF454CBQ.crop_101-2bp.nodup.pr2.tagAlign.gz
Filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF454CBQ.crop_101-2bp.nodup.bam
Raw BAM from alignergs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-align/shard-1/glob-3bcbe4e7489c90f75e0523ac6f3a9385/ENCFF454CBQ.crop_101-2bp.bam
TAG-ALIGNgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-bam2ta/shard-1/glob-199637d3015dccbe277f621a18be9eb4/ENCFF454CBQ.crop_101-2bp.nodup.tagAlign.gz
Peak
IDR reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_idr/glob-aae3f88ec555ee05b83e37921e9eb318/idr.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_idr/glob-f628f97804061610489fb3df14b8b3f0/idr.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_idr/glob-29708b5a00e414f63a187d12af34d0d2/idr.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_idr/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/idr.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_idr/glob-240c97f2273cc92383b551c4d2655be9/idr.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_idr/glob-fe7dae7ccfff8f80b0a121847139e130/idr.optimal_peak.narrowPeak.hammock.gz
Overlap reproducibility
Conservative peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_overlap/glob-aae3f88ec555ee05b83e37921e9eb318/overlap.conservative_peak.narrowPeak.gz
Conservative peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_overlap/glob-f628f97804061610489fb3df14b8b3f0/overlap.conservative_peak.narrowPeak.bb
Conservative peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_overlap/glob-29708b5a00e414f63a187d12af34d0d2/overlap.conservative_peak.narrowPeak.hammock.gz
Optimal peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_overlap/glob-1b1244d5baf1a7d98d4b7b76d79e43bf/overlap.optimal_peak.narrowPeak.gz
Optimal peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_overlap/glob-240c97f2273cc92383b551c4d2655be9/overlap.optimal_peak.narrowPeak.bb
Optimal peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_overlap/glob-fe7dae7ccfff8f80b0a121847139e130/overlap.optimal_peak.narrowPeak.hammock.gz
Pooled pseudoreplicate 1 vs. 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap_ppr/glob-2e6c87fc90e45fa5dbda88934d454cd3/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap_ppr/glob-155eada107f68a2195912a39f5dee4bc/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap_ppr/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/pooled-pr1_vs_pooled-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_ppr/glob-b34256f7f8497ceb77fad19f39663af0/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.gz
Pooled replicate
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_ppr1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr1.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_ppr1/glob-155eada107f68a2195912a39f5dee4bc/rep-pr1.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_ppr1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr1.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_ppr1/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr1.pooled_x_ctl.pooled.539M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_ppr2/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep-pr2.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_ppr2/glob-155eada107f68a2195912a39f5dee4bc/rep-pr2.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_ppr2/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep-pr2.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_ppr2/glob-254907fcd430d7e6c9bf67ac4585adb4/rep-pr2.pooled_x_ctl.pooled.539M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pooled/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pooled/glob-155eada107f68a2195912a39f5dee4bc/rep.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pooled/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pooled/glob-254907fcd430d7e6c9bf67ac4585adb4/rep.pooled_x_ctl.pooled.539M.pval0.01.500K.narrowPeak.gz
Rep1 vs. rep2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1_vs_rep2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep1_vs_rep2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1_vs_rep2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.gz
Replicate 1
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap_pr/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap_pr/shard-0/glob-155eada107f68a2195912a39f5dee4bc/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap_pr/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep1-pr1_vs_rep1-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-0/glob-b34256f7f8497ceb77fad19f39663af0/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr1/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF456XDQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr1/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF456XDQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr1/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF456XDQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr1/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF456XDQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr2/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF456XDQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr2/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF456XDQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr2/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF456XDQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr2/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF456XDQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak/shard-0/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak/shard-0/glob-155eada107f68a2195912a39f5dee4bc/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak/shard-0/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak/shard-0/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.pval0.01.500K.narrowPeak.gz
Replicate 2
Pseudorep 1 vs. pseudorep 2
Blacklist-filtered IDR peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.gz
Blacklist-filtered IDR peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.bb
Blacklist-filtered IDR peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.narrowPeak.hammock.gz
Blacklist-filtered overlap peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap_pr/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.gz
Blacklist-filtered overlap peak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap_pr/shard-1/glob-155eada107f68a2195912a39f5dee4bc/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.bb
Blacklist-filtered overlap peak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap_pr/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/rep2-pr1_vs_rep2-pr2.overlap.bfilt.narrowPeak.hammock.gz
Unthresholded raw IDR peakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-1/glob-b34256f7f8497ceb77fad19f39663af0/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.gz
Pseudoreplicate 1
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr1/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF454CBQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr1/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF454CBQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr1/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF454CBQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr1/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF454CBQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.pval0.01.500K.narrowPeak.gz
Pseudoreplicate 2
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr2/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF454CBQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr2/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF454CBQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr2/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF454CBQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr2/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF454CBQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.pval0.01.500K.narrowPeak.gz
Blacklist-filtered narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak/shard-1/glob-2e6c87fc90e45fa5dbda88934d454cd3/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.pval0.01.500K.bfilt.narrowPeak.gz
Blacklist-filtered narrowpeak (BigBed)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak/shard-1/glob-155eada107f68a2195912a39f5dee4bc/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.pval0.01.500K.bfilt.narrowPeak.bb
Blacklist-filtered narrowpeak (hammock)gs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak/shard-1/glob-08ed81b9c4c9ccf6c3692d9ea29b11e0/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.pval0.01.500K.bfilt.narrowPeak.hammock.gz
Raw narrowpeakgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak/shard-1/glob-254907fcd430d7e6c9bf67ac4585adb4/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.pval0.01.500K.narrowPeak.gz
QC and logs
Pooled pseudoreplicate 1 vs. 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap_ppr/glob-156b027b56a0fc9230201b265d9f4bf4/pooled-pr1_vs_pooled-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_ppr/glob-748df5c4b6fa48c407f98a93d42e64c6/pooled-pr1_vs_pooled-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_ppr/glob-8da83e7748d9e54f3e082eb4aa171757/pooled-pr1_vs_pooled-pr2.idr0.05.unthresholded-peaks.txt.png
Pooled replicate
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_ppr1/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr1.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_ppr2/glob-156b027b56a0fc9230201b265d9f4bf4/rep-pr2.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.frip.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pooled/glob-156b027b56a0fc9230201b265d9f4bf4/rep.pooled_x_ctl.pooled.539M.pval0.01.500K.bfilt.frip.qc
Rep1 vs. vs vs. rep2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep1_vs_rep2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1_vs_rep2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep1_vs_rep2.idr0.05.unthresholded-peaks.txt.png
Replicate 1
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap_pr/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/rep1-pr1_vs_rep1-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-0/glob-748df5c4b6fa48c407f98a93d42e64c6/rep1-pr1_vs_rep1-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-0/glob-8da83e7748d9e54f3e082eb4aa171757/rep1-pr1_vs_rep1-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr1/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF456XDQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.271M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr2/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF456XDQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.271M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-xcor/shard-0/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF456XDQ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-xcor/shard-0/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF456XDQ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-0/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF456XDQ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak/shard-0/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-0/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF456XDQ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-align/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF456XDQ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-0/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF456XDQ.crop_101-2bp.nodup.samstats.qc
Replicate 2
Pseudorep 1 vs. pseudorep 2
Fraction of IDR peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.idr0.05.bfilt.frip.qc
Fraction of overlap peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-overlap_pr/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/rep2-pr1_vs_rep2-pr2.overlap.bfilt.frip.qc
IDR loggs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-1/glob-748df5c4b6fa48c407f98a93d42e64c6/rep2-pr1_vs_rep2-pr2.idr0.05.log
IDR plotgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-idr_pr/shard-1/glob-8da83e7748d9e54f3e082eb4aa171757/rep2-pr1_vs_rep2-pr2.idr0.05.unthresholded-peaks.txt.png
Pseudoreplicate 1
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr1/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF454CBQ.crop_101-2bp.nodup.pr1_x_ctl.pooled.268M.pval0.01.500K.bfilt.frip.qc
Pseudoreplicate 2
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak_pr2/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF454CBQ.crop_101-2bp.nodup.pr2_x_ctl.pooled.268M.pval0.01.500K.bfilt.frip.qc
Cross-correlation Plotgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-xcor/shard-1/glob-c0eba07eee633b4055d7d9d85813fdf5/ENCFF454CBQ.trim_50bp.filt.no_chrM.15M.cc.plot.png
Cross-correlation scoregs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-xcor/shard-1/glob-75e08482e6a5fe7a0d0013bbdfdf694c/ENCFF454CBQ.trim_50bp.filt.no_chrM.15M.cc.qc
Dup QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-1/glob-1b4794e80f740fd50137e3a948d7ba79/ENCFF454CBQ.crop_101-2bp.dup.qc
Fraction of peaks in readsgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-call_peak/shard-1/glob-156b027b56a0fc9230201b265d9f4bf4/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.pval0.01.500K.bfilt.frip.qc
Library complexity QC for filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-1/glob-57d0acc485690c2359d57a5a21e0aedb/ENCFF454CBQ.crop_101-2bp.dupmark.lib_complexity.qc
SAMstats log for Raw BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-align/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF454CBQ.crop_101-2bp.samstats.qc
SAMstats log for filtered BAMgs://encode-processing/caper_out_v8_20/chip/52be6236-a5e2-41b6-9d81-725ba723465f/call-filter/shard-1/glob-7b38d9959cf6f3deb83ac2bd156d8317/ENCFF454CBQ.crop_101-2bp.nodup.samstats.qc
Final HTML reportgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-qc_report/glob-eae855c82d0f7e2185388856e7b2cc7b/qc.html
Final QC JSON filegs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-qc_report/glob-3440f922973abb7a616aaf203e0db08b/qc.json
Jensen-Shannon distance plotgs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-jsd/attempt-2/glob-fc36854b6867c1581ab159b09dd7e2f4/ENCFF456XDQ.crop_101-2bp.nodup.jsd_plot.png
Reproducibility QC for IDR peaksgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_overlap/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/overlap.reproducibility.qc
Reproducibility QC for overlap peaksgs://encode-processing/caper_out_v8_20/chip/c820d3ec-8cd8-477f-93b7-8a2fc46b6ed3/call-reproducibility_idr/glob-2e0755477c7b64fb4cd35cd75c0b0f2a/idr.reproducibility.qc
Signal
Pooled replicate
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-macs2_signal_track_pooled/glob-8876d8ced974dc46a0c7a4fac20a3a95/rep.pooled_x_ctl.pooled.539M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-macs2_signal_track_pooled/glob-7ab0340dfeb10ca109917cbdcc568548/rep.pooled_x_ctl.pooled.539M.pval.signal.bigwig
Replicate 1
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-macs2_signal_track/shard-0/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-macs2_signal_track/shard-0/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF456XDQ.crop_101-2bp.nodup_x_ctl.pooled.271M.pval.signal.bigwig
Replicate 2
MACS2 signal track (fold-enrichment)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-macs2_signal_track/shard-1/glob-8876d8ced974dc46a0c7a4fac20a3a95/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.fc.signal.bigwig
MACS2 signal track (p-val)gs://encode-processing/caper_out_v8_20/chip/e79ab60d-ca81-4e2d-97df-b360c6467d74/call-macs2_signal_track/shard-1/glob-7ab0340dfeb10ca109917cbdcc568548/ENCFF454CBQ.crop_101-2bp.nodup_x_ctl.pooled.268M.pval.signal.bigwig
Task graph
D cluster_pooled_rep Pooled replicate cluster_rep1 Replicate 1 cluster_rep2 Replicate 2 cluster_pooled_ctl Pooled control cluster_ctl1 Control 1 cluster_ctl2 Control 2 cluster_ctl3 Control 3 cluster_ctl4 Control 4 cluster_ctl5 Control 5 cluster_ctl6 Control 6 cluster_ctl7 Control 7 cluster_ctl8 Control 8 cluster_ctl9 Control 9 cluster_ctl10 Control 10 cluster_ctl11 cluster_ctl12 cluster_ctl13 cluster_ctl14 cluster_ctl15 cluster_ctl16 cluster_ctl17 cluster_ctl18 cluster_ctl19 cluster_ctl20 cluster_ctl21 cluster_ctl22 cluster_ctl23 cluster_ctl24 -6546665078537016285 chip.macs2_signal_track_pooled 2961400862605362370 BW FC -6546665078537016285->2961400862605362370 6771460715950293191 BW p-val -6546665078537016285->6771460715950293191 -4884175703475602219 chip.call_peak_pooled -122036222415995071 Peak (bfilt) -4884175703475602219->-122036222415995071 -8402759854218767258 Peak -4884175703475602219->-8402759854218767258 5003346559835080872 chip.idr_ppr -8402759854218767258->5003346559835080872 6498724288876209793 chip.idr -8402759854218767258->6498724288876209793 8111605679168425105 chip.overlap -8402759854218767258->8111605679168425105 2252460317364015754 chip.overlap_ppr -8402759854218767258->2252460317364015754 -3735714220081933362 chip.pool_ta -4721876266393742307 TAG-ALIGN -3735714220081933362->-4721876266393742307 -4721876266393742307->-6546665078537016285 -4721876266393742307->-4884175703475602219 -4721876266393742307->5003346559835080872 -4721876266393742307->6498724288876209793 -4721876266393742307->8111605679168425105 -4721876266393742307->2252460317364015754 -9150686955933386630 chip.call_peak 1889078786548690202 Peak (bfilt) -9150686955933386630->1889078786548690202 -4116439594198099322 Peak -9150686955933386630->-4116439594198099322 -4116439594198099322->6498724288876209793 -4116439594198099322->8111605679168425105 -1505073897829405108 chip.reproducibility_overlap -4116439594198099322->-1505073897829405108 -2520144372457839504 chip.reproducibility_idr -4116439594198099322->-2520144372457839504 4880719059333652287 chip.bam2ta 417052301184860743 TAG-ALIGN 4880719059333652287->417052301184860743 417052301184860743->-3735714220081933362 417052301184860743->-9150686955933386630 5432871146278253378 chip.macs2_signal_track 417052301184860743->5432871146278253378 417052301184860743->5003346559835080872 417052301184860743->-1505073897829405108 417052301184860743->-2520144372457839504 417052301184860743->2252460317364015754 7103109252017126043 chip.filter -7554002719187678081 SAMstats QC 7103109252017126043->-7554002719187678081 5089307060186108849 Filt/deduped BAM 7103109252017126043->5089307060186108849 -5370871665912227122 LibCmplx QC 7103109252017126043->-5370871665912227122 5089307060186108849->4880719059333652287 1061905684124387446 chip.jsd 5089307060186108849->1061905684124387446 -5520723013253586088 chip.align -7006284220899436619 SAMstats QC -5520723013253586088->-7006284220899436619 -8306133936644802353 BAM -5520723013253586088->-8306133936644802353 -8306133936644802353->7103109252017126043 4226530603804190998 chip.xcor -2180875447938397035 XCOR Plot 4226530603804190998->-2180875447938397035 1905044695181916228 BW FC 5432871146278253378->1905044695181916228 9055923271499964515 BW p-val 5432871146278253378->9055923271499964515 -1862611180585114768 FASTQ R1 (1) -1862611180585114768->-5520723013253586088 -1862611180585114768->4226530603804190998 -3373440834118245294 FASTQ R2 (1) -3373440834118245294->-5520723013253586088 -3876888326900239400 chip.call_peak 7797784935080331006 Peak (bfilt) -3876888326900239400->7797784935080331006 3168605588110728385 Peak -3876888326900239400->3168605588110728385 3168605588110728385->6498724288876209793 3168605588110728385->8111605679168425105 3168605588110728385->-1505073897829405108 3168605588110728385->-2520144372457839504 7690014785629418413 chip.bam2ta -3767950431335244940 TAG-ALIGN 7690014785629418413->-3767950431335244940 -3767950431335244940->-3735714220081933362 -3767950431335244940->-3876888326900239400 -7407562407653584576 chip.macs2_signal_track -3767950431335244940->-7407562407653584576 -3767950431335244940->5003346559835080872 -3767950431335244940->-1505073897829405108 -3767950431335244940->-2520144372457839504 -3767950431335244940->2252460317364015754 3210349569953743512 chip.filter -5793996884855726435 SAMstats QC 3210349569953743512->-5793996884855726435 -6563739203593378403 Filt/deduped BAM 3210349569953743512->-6563739203593378403 -2694282544884397508 LibCmplx QC 3210349569953743512->-2694282544884397508 -6563739203593378403->7690014785629418413 -6563739203593378403->1061905684124387446 -7436708467097513717 chip.align 6446324939328845667 SAMstats QC -7436708467097513717->6446324939328845667 5841086389217551052 BAM -7436708467097513717->5841086389217551052 5841086389217551052->3210349569953743512 380176335900371981 chip.xcor -4722186767095433815 XCOR Plot 380176335900371981->-4722186767095433815 5859110615750655156 BW FC -7407562407653584576->5859110615750655156 -687658077550011179 BW p-val -7407562407653584576->-687658077550011179 -2455330842330172102 FASTQ R1 (1) -2455330842330172102->-7436708467097513717 -2455330842330172102->380176335900371981 908270637266175021 FASTQ R2 (1) 908270637266175021->-7436708467097513717 -600177139047273545 chip.pool_ta_ctl 5596828951704479621 TAG-ALIGN -600177139047273545->5596828951704479621 5596828951704479621->-6546665078537016285 5596828951704479621->-4884175703475602219 5596828951704479621->-9150686955933386630 5596828951704479621->5432871146278253378 5596828951704479621->-3876888326900239400 5596828951704479621->-7407562407653584576 5596828951704479621->5003346559835080872 5596828951704479621->-1505073897829405108 5596828951704479621->-2520144372457839504 5596828951704479621->2252460317364015754 963630538715455282 chip.bam2ta_ctl 6081340565938520944 TAG-ALIGN 963630538715455282->6081340565938520944 6081340565938520944->-600177139047273545 -6038938476095390201 Filt/deduped BAM -6038938476095390201->963630538715455282 -6038938476095390201->1061905684124387446 1382958524988639958 chip.bam2ta_ctl 682010099305644287 TAG-ALIGN 1382958524988639958->682010099305644287 682010099305644287->-600177139047273545 6035750313334327049 Filt/deduped BAM 6035750313334327049->1382958524988639958 6035750313334327049->1061905684124387446 1216883150373522255 chip.bam2ta_ctl -5636200245014366985 TAG-ALIGN 1216883150373522255->-5636200245014366985 -5636200245014366985->-600177139047273545 112789906306153721 Filt/deduped BAM 112789906306153721->1216883150373522255 112789906306153721->1061905684124387446 7878892132661036807 chip.bam2ta_ctl -2134854982196927508 TAG-ALIGN 7878892132661036807->-2134854982196927508 -2134854982196927508->-600177139047273545 6883684009486560611 Filt/deduped BAM 6883684009486560611->7878892132661036807 6883684009486560611->1061905684124387446 6635454763897637083 chip.bam2ta_ctl -1446762385790289810 TAG-ALIGN 6635454763897637083->-1446762385790289810 -1446762385790289810->-600177139047273545 -3462939115788406388 Filt/deduped BAM -3462939115788406388->6635454763897637083 -3462939115788406388->1061905684124387446 -848105076455328783 chip.bam2ta_ctl 6873802131484526544 TAG-ALIGN -848105076455328783->6873802131484526544 6873802131484526544->-600177139047273545 3583312703713304499 Filt/deduped BAM 3583312703713304499->-848105076455328783 3583312703713304499->1061905684124387446 -4091246467994650068 chip.bam2ta_ctl 1800545572723872958 TAG-ALIGN -4091246467994650068->1800545572723872958 1800545572723872958->-600177139047273545 8146520414793719465 Filt/deduped BAM 8146520414793719465->-4091246467994650068 8146520414793719465->1061905684124387446 836169210288467116 chip.bam2ta_ctl -9132239452876309315 TAG-ALIGN 836169210288467116->-9132239452876309315 -9132239452876309315->-600177139047273545 -999972938498845913 Filt/deduped BAM -999972938498845913->836169210288467116 -999972938498845913->1061905684124387446 6581470610988487126 chip.bam2ta_ctl 7694235788067297710 TAG-ALIGN 6581470610988487126->7694235788067297710 7694235788067297710->-600177139047273545 -5591289779758599555 Filt/deduped BAM -5591289779758599555->6581470610988487126 -5591289779758599555->1061905684124387446 402024689639808713 chip.bam2ta_ctl -2350468302858481782 TAG-ALIGN 402024689639808713->-2350468302858481782 -2350468302858481782->-600177139047273545 -8051918278177708235 Filt/deduped BAM -8051918278177708235->402024689639808713 -8051918278177708235->1061905684124387446 2919095677883158353 chip.bam2ta_ctl -1879545338198633149 TAG-ALIGN 2919095677883158353->-1879545338198633149 -1879545338198633149->-600177139047273545 1568743359437536491 Filt/deduped BAM 1568743359437536491->2919095677883158353 1568743359437536491->1061905684124387446 1620777242440774593 chip.bam2ta_ctl -4653534232736268009 TAG-ALIGN 1620777242440774593->-4653534232736268009 -4653534232736268009->-600177139047273545 -7291274211888897872 Filt/deduped BAM -7291274211888897872->1620777242440774593 -7291274211888897872->1061905684124387446 4226630820076443177 chip.bam2ta_ctl -6968877486373562716 TAG-ALIGN 4226630820076443177->-6968877486373562716 -6968877486373562716->-600177139047273545 4910498616553103828 Filt/deduped BAM 4910498616553103828->4226630820076443177 4910498616553103828->1061905684124387446 6769093317115901868 chip.bam2ta_ctl -2768431501686812849 TAG-ALIGN 6769093317115901868->-2768431501686812849 -2768431501686812849->-600177139047273545 3276680054918363123 Filt/deduped BAM 3276680054918363123->6769093317115901868 3276680054918363123->1061905684124387446 2523638507528562285 chip.bam2ta_ctl 4472189827974890042 TAG-ALIGN 2523638507528562285->4472189827974890042 4472189827974890042->-600177139047273545 -1133405660774727816 Filt/deduped BAM -1133405660774727816->2523638507528562285 -1133405660774727816->1061905684124387446 -648426619870950418 chip.bam2ta_ctl 3263782572460876974 TAG-ALIGN -648426619870950418->3263782572460876974 3263782572460876974->-600177139047273545 -4541528712132969644 Filt/deduped BAM -4541528712132969644->-648426619870950418 -4541528712132969644->1061905684124387446 -8729188682818365658 chip.bam2ta_ctl -1243881925416236704 TAG-ALIGN -8729188682818365658->-1243881925416236704 -1243881925416236704->-600177139047273545 2096316102194345499 Filt/deduped BAM 2096316102194345499->-8729188682818365658 2096316102194345499->1061905684124387446 5655488525267185713 chip.bam2ta_ctl -7045129342953790110 TAG-ALIGN 5655488525267185713->-7045129342953790110 -7045129342953790110->-600177139047273545 4125066506337209373 Filt/deduped BAM 4125066506337209373->5655488525267185713 4125066506337209373->1061905684124387446 7520235335523445203 chip.bam2ta_ctl 4881490509465829573 TAG-ALIGN 7520235335523445203->4881490509465829573 4881490509465829573->-600177139047273545 -1546841565146475249 Filt/deduped BAM -1546841565146475249->7520235335523445203 -1546841565146475249->1061905684124387446 4241831525036344633 chip.bam2ta_ctl -5344304206156921507 TAG-ALIGN 4241831525036344633->-5344304206156921507 -5344304206156921507->-600177139047273545 -4751982980314421138 Filt/deduped BAM -4751982980314421138->4241831525036344633 -4751982980314421138->1061905684124387446 -326410708460144144 chip.bam2ta_ctl 5160458821113461225 TAG-ALIGN -326410708460144144->5160458821113461225 5160458821113461225->-600177139047273545 -4959818941242656166 Filt/deduped BAM -4959818941242656166->-326410708460144144 -4959818941242656166->1061905684124387446 -2527451320876733079 chip.bam2ta_ctl 7073267957032215130 TAG-ALIGN -2527451320876733079->7073267957032215130 7073267957032215130->-600177139047273545 -2799308199149741271 Filt/deduped BAM -2799308199149741271->-2527451320876733079 -2799308199149741271->1061905684124387446 6492617564289434547 chip.bam2ta_ctl 7798837837517386071 TAG-ALIGN 6492617564289434547->7798837837517386071 7798837837517386071->-600177139047273545 -559288949055761567 Filt/deduped BAM -559288949055761567->6492617564289434547 -559288949055761567->1061905684124387446 -5872106490724075782 chip.bam2ta_ctl -6487670200362240846 TAG-ALIGN -5872106490724075782->-6487670200362240846 -6487670200362240846->-600177139047273545 5800622613322967068 Filt/deduped BAM 5800622613322967068->-5872106490724075782 5800622613322967068->1061905684124387446 2727360888508015531 IDR Plot ppr 5003346559835080872->2727360888508015531 -8777066664674754587 IDR Peak ppr 5003346559835080872->-8777066664674754587 -8777066664674754587->-2520144372457839504 -1923363347646704551 IDR Plot rep1_vs_rep2 6498724288876209793->-1923363347646704551 8089617742595510924 IDR NPeak rep1_vs_rep2 6498724288876209793->8089617742595510924 8089617742595510924->-2520144372457839504 1013704167507793664 Overlap Peak rep1_vs_rep2 8111605679168425105->1013704167507793664 1013704167507793664->-1505073897829405108 -7296210222042046440 Overlap Peak optimal -1505073897829405108->-7296210222042046440 6596598310154795546 Overlap reproducibility -1505073897829405108->6596598310154795546 -2973937664849897312 IDR Peak optimal -2520144372457839504->-2973937664849897312 660528856472784696 IDR reproducibility -2520144372457839504->660528856472784696 1450064423471411996 Overlap Peak ppr 2252460317364015754->1450064423471411996 1450064423471411996->-1505073897829405108 -8065977411834099459 JSD Plot 1061905684124387446->-8065977411834099459

UCSC browser tracks

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UCSC track hub plain text. Paste it directly to custom track edit box on UCSC genome browser. 
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