FastQCFastQC Report
Fri 17 Mar 2017
IC17.bam

Summary

[OK]Basic Statistics

MeasureValue
FilenameIC17.bam
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2005670278
Sequences flagged as poor quality0
Sequence length1-50
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA1104150.075.95392642
GTCGCCG1184950.070.78155540
TCGCCGT1174000.070.1458141
GGTCGCC1342800.062.44437839
TGGTCGC1352750.061.00955638
GCCGTAT1388950.060.89482543
GTGGTCG1421600.057.9822637
CCGTATC1574100.053.68525744
CTCGTAT1578000.051.17277544
TCTCGTA1614000.049.4197343
TCGGTGG1786950.047.19670534
CGGTGGT1877000.044.154735
ATCTCGT1905250.041.77746242
AATCTCG2481500.032.20947341
GGTGGTC3177000.026.53105736
TCTCGGT1837450.021.11542732
CACTATC4236250.020.53171234
CTCGGTG1929400.020.15996633
GAACGGG1481050.020.0191363
CGTCTGA2926100.016.42314717
Produced by FastQC (version 0.11.5)