rep2.r2.trim.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	rep2.r2.trim.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	23586622
Sequences flagged as poor quality	0
Sequence length	14-41
%GC	65

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1277026	5.414196233780318	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	1037646	4.399298890701687	No Hit
ATCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCT	76159	0.3228906623424075	No Hit
ATACTTACCTGGCAGGGGAGATACCATGATCACGAAGGTG	54868	0.23262339134446636	No Hit
AAGACTATACTTTCAGGGATCATTTCTATAGTGTGTTACTA	49814	0.2111959906764097	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTTACTA	6230	85.951164	35
AGTATCT	10545	78.40218	35
CGTGTAT	1305	65.0059	35
TCGCCTT	7595	53.846245	35
TAGTATC	9160	48.883686	34
GTAGTAT	9195	45.335793	33
GTTTATC	2315	43.2112	35
GTGACTA	1670	41.989117	35
TGTAGTA	9975	41.559	32
TGTTACT	7495	38.752285	34
GTGTTAC	7055	38.47964	33
TCACGAA	7770	38.28614	30
ATCACGA	7125	38.101467	29
TGTGTTA	6915	37.769897	32
GATCACG	7010	37.695137	28
AAGTGTA	10060	37.6257	29
ACGAAGG	8510	36.92834	32
GTGTAGT	11020	36.69741	31
TAGTGTG	7040	36.149498	29
CAAGTGT	10270	35.935863	28