cmd = /srv/scratch/jisraeli/projects/jzeitlinger_collab/homer_analysis/sox2_nexus_idr_peaks.cluster_2.narrowPeak /mnt/data/pipeline_genome_data/mm10/mm10_no_alt_analysis_set_ENCODE.fasta /srv/scratch/jisraeli/projects/jzeitlinger_collab/homer_analysis/cluster_2_homer -size given -bg /srv/scratch/jisraeli/projects/jzeitlinger_collab/homer_analysis/Sox2_123b_1_ppr.IDR0.05.filt.narrowPeak