Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2770)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 6531)	% of Background Sequences with Motif
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-11	-2.570e+01	0.0000	2263.0	81.70%	4988.0	76.37%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-9	-2.300e+01	0.0000	2172.0	78.41%	4778.8	73.17%
SeqBias: TA-repeat	TATATATATA	1e-9	-2.192e+01	0.0000	1380.0	49.82%	2870.1	43.94%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-9	-2.080e+01	0.0000	1424.0	51.41%	2984.2	45.69%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-8	-1.945e+01	0.0000	2109.0	76.14%	4652.6	71.24%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-8	-1.888e+01	0.0000	1625.0	58.66%	3479.7	53.28%
SeqBias: GA-repeat	GAGAGAGAGA	1e-7	-1.738e+01	0.0000	2376.0	85.78%	5350.0	81.91%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-7	-1.725e+01	0.0000	1323.0	47.76%	2785.2	42.64%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e-7	-1.701e+01	0.0000	900.0	32.49%	1818.6	27.85%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e-7	-1.662e+01	0.0000	192.0	6.93%	304.7	4.66%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e-6	-1.582e+01	0.0000	471.0	17.00%	884.0	13.54%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e-6	-1.581e+01	0.0000	170.0	6.14%	265.0	4.06%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-6	-1.575e+01	0.0000	2021.0	72.96%	4472.5	68.48%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e-6	-1.531e+01	0.0000	263.0	9.49%	452.4	6.93%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e-6	-1.528e+01	0.0000	842.0	30.40%	1705.1	26.11%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e-6	-1.509e+01	0.0000	430.0	15.52%	802.7	12.29%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-6	-1.500e+01	0.0000	151.0	5.45%	232.8	3.57%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-6	-1.485e+01	0.0000	1751.0	63.21%	3826.5	58.59%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-6	-1.463e+01	0.0000	475.0	17.15%	902.2	13.81%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-6	-1.391e+01	0.0000	328.0	11.84%	595.5	9.12%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-5	-1.353e+01	0.0001	1773.0	64.01%	3895.9	59.65%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-5	-1.337e+01	0.0001	226.0	8.16%	388.7	5.95%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-5	-1.263e+01	0.0001	847.0	30.58%	1745.4	26.72%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e-5	-1.258e+01	0.0001	381.0	13.75%	717.0	10.98%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-5	-1.257e+01	0.0001	416.0	15.02%	792.4	12.13%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-5	-1.253e+01	0.0001	1543.0	55.70%	3359.7	51.44%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-5	-1.252e+01	0.0001	1432.0	51.70%	3097.7	47.43%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e-5	-1.249e+01	0.0001	1520.0	54.87%	3305.3	50.61%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e-5	-1.239e+01	0.0001	250.0	9.03%	443.2	6.79%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-5	-1.232e+01	0.0001	221.0	7.98%	384.3	5.88%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e-5	-1.214e+01	0.0002	312.0	11.26%	574.8	8.80%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e-5	-1.197e+01	0.0002	503.0	18.16%	986.4	15.10%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-5	-1.193e+01	0.0002	1015.0	36.64%	2136.1	32.71%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e-5	-1.175e+01	0.0002	284.0	10.25%	518.2	7.93%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-5	-1.166e+01	0.0002	417.0	15.05%	802.7	12.29%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-5	-1.162e+01	0.0002	375.0	13.54%	712.8	10.91%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e-5	-1.159e+01	0.0002	1552.0	56.03%	3393.9	51.96%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e-5	-1.157e+01	0.0002	291.0	10.51%	534.1	8.18%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e-4	-1.131e+01	0.0003	23.0	0.83%	19.6	0.30%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-4	-1.099e+01	0.0004	452.0	16.32%	884.5	13.54%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e-4	-1.092e+01	0.0004	252.0	9.10%	457.6	7.01%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-4	-1.080e+01	0.0004	1393.0	50.29%	3029.9	46.39%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e-4	-1.073e+01	0.0005	222.0	8.01%	396.0	6.06%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e-4	-1.055e+01	0.0006	202.0	7.29%	356.3	5.46%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e-4	-1.048e+01	0.0006	567.0	20.47%	1142.1	17.49%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-4	-1.042e+01	0.0006	923.0	33.32%	1945.0	29.78%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-4	-1.022e+01	0.0007	368.0	13.29%	709.3	10.86%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-4	-1.019e+01	0.0007	227.0	8.19%	410.3	6.28%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-4	-1.019e+01	0.0007	173.0	6.25%	299.7	4.59%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-4	-1.016e+01	0.0007	1814.0	65.49%	4039.3	61.85%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e-4	-1.012e+01	0.0007	153.0	5.52%	259.1	3.97%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-4	-1.011e+01	0.0007	349.0	12.60%	669.1	10.24%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-4	-1.001e+01	0.0008	529.0	19.10%	1063.5	16.28%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-4	-9.976e+00	0.0008	647.0	23.36%	1326.0	20.30%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-4	-9.976e+00	0.0008	823.0	29.71%	1723.6	26.39%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-4	-9.965e+00	0.0008	289.0	10.43%	542.2	8.30%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e-4	-9.891e+00	0.0008	267.0	9.64%	497.0	7.61%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-4	-9.805e+00	0.0009	1037.0	37.44%	2215.3	33.92%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e-4	-9.758e+00	0.0009	107.0	3.86%	170.1	2.60%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e-4	-9.699e+00	0.0009	175.0	6.32%	306.5	4.69%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-4	-9.636e+00	0.0010	1243.0	44.87%	2695.9	41.28%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-4	-9.586e+00	0.0010	351.0	12.67%	678.8	10.39%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e-4	-9.571e+00	0.0010	317.0	11.44%	605.2	9.27%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-4	-9.537e+00	0.0010	208.0	7.51%	375.6	5.75%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e-4	-9.431e+00	0.0011	5.0	0.18%	1.7	0.03%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-4	-9.351e+00	0.0012	1045.0	37.73%	2240.8	34.31%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e-4	-9.277e+00	0.0013	222.0	8.01%	406.4	6.22%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-3	-9.203e+00	0.0014	389.0	14.04%	764.1	11.70%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-3	-9.195e+00	0.0014	477.0	17.22%	957.7	14.66%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-3	-9.181e+00	0.0014	828.0	29.89%	1745.1	26.72%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-3	-9.121e+00	0.0014	552.0	19.93%	1124.5	17.22%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-3	-9.088e+00	0.0014	1322.0	47.73%	2889.0	44.23%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-9.076e+00	0.0014	217.0	7.83%	397.5	6.09%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-3	-9.071e+00	0.0014	675.0	24.37%	1400.6	21.44%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-3	-9.053e+00	0.0014	1765.0	63.72%	3938.9	60.31%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-3	-9.043e+00	0.0014	539.0	19.46%	1096.5	16.79%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e-3	-9.034e+00	0.0014	773.0	27.91%	1622.6	24.84%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e-3	-9.018e+00	0.0014	138.0	4.98%	235.9	3.61%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-3	-8.995e+00	0.0014	366.0	13.21%	716.5	10.97%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e-3	-8.993e+00	0.0014	76.0	2.74%	114.3	1.75%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-3	-8.954e+00	0.0015	30.0	1.08%	33.6	0.51%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-3	-8.922e+00	0.0015	1886.0	68.09%	4231.4	64.79%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e-3	-8.904e+00	0.0015	153.0	5.52%	266.9	4.09%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-3	-8.756e+00	0.0017	309.0	11.16%	595.3	9.11%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-3	-8.733e+00	0.0017	1070.0	38.63%	2308.0	35.34%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e-3	-8.697e+00	0.0018	34.0	1.23%	40.9	0.63%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e-3	-8.644e+00	0.0019	328.0	11.84%	637.8	9.77%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e-3	-8.640e+00	0.0019	753.0	27.18%	1582.7	24.23%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-3	-8.624e+00	0.0019	191.0	6.90%	346.9	5.31%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-3	-8.560e+00	0.0020	2768.0	99.93%	6500.7	99.53%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-3	-8.503e+00	0.0021	1199.0	43.29%	2610.7	39.97%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e-3	-8.471e+00	0.0021	231.0	8.34%	431.4	6.61%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e-3	-8.467e+00	0.0021	413.0	14.91%	824.2	12.62%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-3	-8.385e+00	0.0022	1483.0	53.54%	3278.7	50.20%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-3	-8.360e+00	0.0023	145.0	5.23%	253.4	3.88%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-3	-8.343e+00	0.0023	601.0	21.70%	1243.5	19.04%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-3	-8.310e+00	0.0023	736.0	26.57%	1548.2	23.70%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-3	-8.207e+00	0.0026	658.0	23.75%	1373.4	21.03%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-3	-8.140e+00	0.0027	473.0	17.08%	960.7	14.71%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e-3	-8.139e+00	0.0027	99.0	3.57%	162.7	2.49%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-3	-8.131e+00	0.0027	157.0	5.67%	279.6	4.28%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-3	-8.094e+00	0.0028	122.0	4.40%	208.0	3.19%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-3	-8.058e+00	0.0028	27.0	0.97%	30.7	0.47%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-3	-8.040e+00	0.0029	733.0	26.46%	1545.2	23.66%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-3	-8.025e+00	0.0029	162.0	5.85%	290.9	4.45%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-3	-7.939e+00	0.0031	2269.0	81.91%	5181.0	79.33%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e-3	-7.919e+00	0.0031	103.0	3.72%	171.7	2.63%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e-3	-7.893e+00	0.0032	487.0	17.58%	995.0	15.23%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-3	-7.736e+00	0.0037	215.0	7.76%	403.4	6.18%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-3	-7.722e+00	0.0037	59.0	2.13%	87.2	1.34%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e-3	-7.715e+00	0.0037	222.0	8.01%	418.0	6.40%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-3	-7.709e+00	0.0037	266.0	9.60%	512.3	7.84%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-3	-7.706e+00	0.0037	1116.0	40.29%	2430.9	37.22%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-3	-7.653e+00	0.0038	1241.0	44.80%	2722.8	41.69%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e-3	-7.653e+00	0.0038	180.0	6.50%	330.9	5.07%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e-3	-7.651e+00	0.0038	760.0	27.44%	1612.9	24.70%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-3	-7.618e+00	0.0039	481.0	17.36%	984.4	15.07%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e-3	-7.578e+00	0.0040	221.0	7.98%	417.4	6.39%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e-3	-7.561e+00	0.0040	935.0	33.75%	2014.6	30.85%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e-3	-7.475e+00	0.0044	575.0	20.76%	1196.5	18.32%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-3	-7.460e+00	0.0044	25.0	0.90%	28.7	0.44%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e-3	-7.441e+00	0.0044	83.0	3.00%	134.1	2.05%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-3	-7.429e+00	0.0044	173.0	6.25%	317.4	4.86%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-3	-7.411e+00	0.0045	15.0	0.54%	14.0	0.21%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e-3	-7.407e+00	0.0045	274.0	9.89%	532.9	8.16%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e-3	-7.371e+00	0.0046	72.0	2.60%	113.1	1.73%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e-3	-7.350e+00	0.0047	776.0	28.01%	1653.0	25.31%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-3	-7.345e+00	0.0047	1870.0	67.51%	4218.6	64.59%
SeqBias: CG bias	SSSSSSSSSS	1e-3	-7.262e+00	0.0050	2359.0	85.16%	5414.8	82.91%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-3	-7.238e+00	0.0051	1041.0	37.58%	2264.5	34.67%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-3	-7.234e+00	0.0051	360.0	13.00%	721.6	11.05%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-3	-7.155e+00	0.0055	617.0	22.27%	1295.2	19.83%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-3	-7.134e+00	0.0055	945.0	34.12%	2044.4	31.30%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-3	-7.108e+00	0.0056	522.0	18.84%	1082.1	16.57%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-3	-7.091e+00	0.0057	959.0	34.62%	2077.5	31.81%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-3	-7.083e+00	0.0057	491.0	17.73%	1013.9	15.52%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-3	-7.048e+00	0.0058	672.0	24.26%	1421.3	21.76%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-3	-7.032e+00	0.0059	151.0	5.45%	274.5	4.20%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e-3	-7.028e+00	0.0059	412.0	14.87%	838.4	12.84%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-3	-7.022e+00	0.0059	56.0	2.02%	84.7	1.30%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e-3	-6.973e+00	0.0061	188.0	6.79%	352.7	5.40%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-3	-6.938e+00	0.0063	430.0	15.52%	879.5	13.47%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-3	-6.909e+00	0.0064	568.0	20.51%	1188.9	18.20%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e-2	-6.908e+00	0.0064	60.0	2.17%	92.7	1.42%
SeqBias: CA-repeat	CACACACACA	1e-2	-6.874e+00	0.0066	2158.0	77.91%	4924.3	75.40%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-2	-6.856e+00	0.0067	569.0	20.54%	1191.4	18.24%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-2	-6.841e+00	0.0067	811.0	29.28%	1741.7	26.67%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-2	-6.829e+00	0.0067	29.0	1.05%	36.4	0.56%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-2	-6.803e+00	0.0069	100.0	3.61%	171.7	2.63%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-2	-6.716e+00	0.0074	1248.0	45.05%	2755.5	42.19%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-2	-6.685e+00	0.0076	59.0	2.13%	91.4	1.40%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-6.656e+00	0.0078	306.0	11.05%	609.2	9.33%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-2	-6.618e+00	0.0081	465.0	16.79%	961.7	14.72%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-2	-6.561e+00	0.0085	134.0	4.84%	242.5	3.71%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-2	-6.546e+00	0.0085	305.0	11.01%	608.4	9.31%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e-2	-6.511e+00	0.0088	281.0	10.14%	556.8	8.52%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-6.509e+00	0.0088	1407.0	50.79%	3133.0	47.97%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-2	-6.442e+00	0.0093	1143.0	41.26%	2515.1	38.51%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e-2	-6.430e+00	0.0094	92.0	3.32%	157.1	2.41%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-2	-6.395e+00	0.0096	51.0	1.84%	77.9	1.19%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-2	-6.394e+00	0.0096	1054.0	38.05%	2309.1	35.35%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-2	-6.393e+00	0.0096	726.0	26.21%	1554.2	23.80%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-2	-6.388e+00	0.0096	285.0	10.29%	567.0	8.68%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e-2	-6.370e+00	0.0096	196.0	7.08%	374.8	5.74%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e-2	-6.358e+00	0.0097	960.0	34.66%	2092.0	32.03%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e-2	-6.332e+00	0.0099	329.0	11.88%	663.4	10.16%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e-2	-6.317e+00	0.0100	149.0	5.38%	275.2	4.21%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-2	-6.300e+00	0.0101	565.0	20.40%	1190.4	18.23%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e-2	-6.250e+00	0.0105	78.0	2.82%	130.2	1.99%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e-2	-6.246e+00	0.0105	293.0	10.58%	585.0	8.96%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-2	-6.240e+00	0.0105	542.0	19.57%	1139.9	17.45%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-2	-6.231e+00	0.0105	162.0	5.85%	303.9	4.65%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e-2	-6.228e+00	0.0105	362.0	13.07%	737.8	11.30%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e-2	-6.211e+00	0.0106	719.0	25.96%	1541.9	23.61%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e-2	-6.210e+00	0.0106	59.0	2.13%	93.1	1.43%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e-2	-6.119e+00	0.0115	535.0	19.31%	1125.4	17.23%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-6.118e+00	0.0115	1340.0	48.38%	2982.6	45.67%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-2	-6.066e+00	0.0120	1247.0	45.02%	2765.8	42.35%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-2	-6.065e+00	0.0120	13.0	0.47%	12.6	0.19%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e-2	-6.055e+00	0.0120	82.0	2.96%	139.9	2.14%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e-2	-6.053e+00	0.0120	127.0	4.58%	231.9	3.55%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e-2	-6.045e+00	0.0120	581.0	20.97%	1230.0	18.83%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-2	-6.010e+00	0.0124	413.0	14.91%	853.8	13.07%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-5.975e+00	0.0127	103.0	3.72%	182.2	2.79%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e-2	-5.944e+00	0.0131	497.0	17.94%	1042.8	15.97%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e-2	-5.917e+00	0.0134	114.0	4.12%	205.5	3.15%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-2	-5.890e+00	0.0136	639.0	23.07%	1364.7	20.89%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-2	-5.889e+00	0.0136	88.0	3.18%	152.9	2.34%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e-2	-5.886e+00	0.0136	87.0	3.14%	150.0	2.30%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e-2	-5.881e+00	0.0136	71.0	2.56%	118.0	1.81%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-5.873e+00	0.0136	692.0	24.98%	1485.3	22.74%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e-2	-5.837e+00	0.0140	939.0	33.90%	2053.1	31.44%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e-2	-5.811e+00	0.0143	118.0	4.26%	214.7	3.29%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e-2	-5.799e+00	0.0144	56.0	2.02%	89.1	1.36%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e-2	-5.758e+00	0.0149	420.0	15.16%	872.7	13.36%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-5.632e+00	0.0168	35.0	1.26%	50.4	0.77%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-2	-5.619e+00	0.0170	399.0	14.40%	828.0	12.68%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-2	-5.618e+00	0.0170	666.0	24.04%	1430.3	21.90%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-2	-5.597e+00	0.0172	335.0	12.09%	685.4	10.49%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e-2	-5.555e+00	0.0178	369.0	13.32%	761.9	11.66%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-5.550e+00	0.0178	31.0	1.12%	43.1	0.66%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-2	-5.532e+00	0.0181	1349.0	48.70%	3015.2	46.17%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-2	-5.502e+00	0.0185	479.0	17.29%	1008.9	15.45%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e-2	-5.473e+00	0.0190	592.0	21.37%	1264.0	19.35%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-5.434e+00	0.0196	165.0	5.96%	316.9	4.85%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-2	-5.415e+00	0.0199	24.0	0.87%	32.0	0.49%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-2	-5.350e+00	0.0211	1509.0	54.48%	3396.3	52.00%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-2	-5.312e+00	0.0219	249.0	8.99%	499.4	7.65%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e-2	-5.284e+00	0.0224	454.0	16.39%	955.0	14.62%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-2	-5.275e+00	0.0225	793.0	28.63%	1727.5	26.45%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-5.236e+00	0.0233	439.0	15.85%	922.1	14.12%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e-2	-5.203e+00	0.0239	433.0	15.63%	909.3	13.92%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-2	-5.190e+00	0.0241	39.0	1.41%	59.5	0.91%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e-2	-5.171e+00	0.0245	213.0	7.69%	422.6	6.47%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e-2	-5.099e+00	0.0262	165.0	5.96%	319.3	4.89%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-2	-5.093e+00	0.0262	410.0	14.80%	859.4	13.16%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-2	-5.082e+00	0.0264	115.0	4.15%	213.1	3.26%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-2	-5.080e+00	0.0264	341.0	12.31%	705.9	10.81%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e-2	-5.068e+00	0.0265	625.0	22.56%	1346.8	20.62%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-2	-5.030e+00	0.0274	1580.0	57.04%	3571.9	54.69%
Tal1	CATCTG	1e-2	-5.008e+00	0.0279	646.0	23.32%	1395.7	21.37%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e-2	-5.003e+00	0.0279	354.0	12.78%	735.5	11.26%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e-2	-4.985e+00	0.0283	322.0	11.62%	664.5	10.17%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-2	-4.958e+00	0.0289	38.0	1.37%	58.3	0.89%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-2	-4.931e+00	0.0296	31.0	1.12%	45.5	0.70%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-2	-4.931e+00	0.0296	627.0	22.64%	1353.1	20.72%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-2	-4.927e+00	0.0296	1453.0	52.45%	3273.3	50.12%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-2	-4.888e+00	0.0305	213.0	7.69%	425.4	6.51%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e-2	-4.887e+00	0.0305	85.0	3.07%	152.8	2.34%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-2	-4.883e+00	0.0305	511.0	18.45%	1090.4	16.70%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-2	-4.879e+00	0.0305	151.0	5.45%	291.6	4.46%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e-2	-4.868e+00	0.0306	228.0	8.23%	458.4	7.02%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e-2	-4.847e+00	0.0311	505.0	18.23%	1077.7	16.50%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-4.847e+00	0.0311	366.0	13.21%	764.5	11.71%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-4.812e+00	0.0319	529.0	19.10%	1132.9	17.35%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e-2	-4.807e+00	0.0319	104.0	3.75%	192.4	2.95%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2	-4.801e+00	0.0320	74.0	2.67%	130.0	1.99%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e-2	-4.777e+00	0.0326	395.0	14.26%	830.0	12.71%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-2	-4.771e+00	0.0327	374.0	13.50%	783.6	12.00%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e-2	-4.758e+00	0.0330	194.0	7.00%	385.8	5.91%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-4.746e+00	0.0332	445.0	16.06%	943.3	14.44%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-4.745e+00	0.0332	59.0	2.13%	100.8	1.54%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-2	-4.714e+00	0.0340	1034.0	37.33%	2296.9	35.17%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e-2	-4.708e+00	0.0341	411.0	14.84%	867.4	13.28%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-2	-4.707e+00	0.0341	116.0	4.19%	218.4	3.34%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e-2	-4.703e+00	0.0341	336.0	12.13%	699.1	10.70%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-2	-4.696e+00	0.0341	24.0	0.87%	33.1	0.51%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-2	-4.663e+00	0.0351	432.0	15.60%	915.7	14.02%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e-2	-4.656e+00	0.0352	367.0	13.25%	769.5	11.78%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-2	-4.644e+00	0.0353	150.0	5.42%	291.3	4.46%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-2	-4.644e+00	0.0353	150.0	5.42%	291.3	4.46%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e-2	-4.636e+00	0.0355	283.0	10.22%	582.9	8.92%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-2	-4.628e+00	0.0356	394.0	14.22%	830.9	12.72%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-2	-4.628e+00	0.0356	5.0	0.18%	3.1	0.05%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-2	-4.610e+00	0.0360	14.0	0.51%	16.2	0.25%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e-2	-4.609e+00	0.0360	70.0	2.53%	123.2	1.89%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-4.597e+00	0.0362	68.0	2.45%	119.7	1.83%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-4.588e+00	0.0364	242.0	8.74%	492.5	7.54%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-1	-4.577e+00	0.0366	21.0	0.76%	28.6	0.44%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-4.571e+00	0.0367	543.0	19.60%	1168.9	17.90%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-4.549e+00	0.0374	122.0	4.40%	232.9	3.57%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-1	-4.541e+00	0.0375	440.0	15.88%	935.6	14.32%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-4.539e+00	0.0375	519.0	18.74%	1114.1	17.06%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-1	-4.521e+00	0.0380	754.0	27.22%	1652.6	25.30%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-1	-4.481e+00	0.0394	37.0	1.34%	58.5	0.90%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e-1	-4.443e+00	0.0408	15.0	0.54%	18.6	0.28%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e-1	-4.439e+00	0.0408	801.0	28.92%	1762.7	26.99%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-1	-4.405e+00	0.0420	831.0	30.00%	1832.1	28.05%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-4.369e+00	0.0434	294.0	10.61%	611.0	9.35%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-4.366e+00	0.0434	54.0	1.95%	92.3	1.41%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-4.301e+00	0.0461	142.0	5.13%	277.1	4.24%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-4.270e+00	0.0474	26.0	0.94%	38.1	0.58%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-1	-4.265e+00	0.0475	1115.0	40.25%	2496.0	38.22%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e-1	-4.260e+00	0.0475	693.0	25.02%	1517.9	23.24%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-4.258e+00	0.0475	363.0	13.10%	767.0	11.74%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-4.253e+00	0.0475	551.0	19.89%	1192.7	18.26%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e-1	-4.243e+00	0.0478	641.0	23.14%	1398.5	21.41%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-4.241e+00	0.0478	758.0	27.36%	1667.2	25.53%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e-1	-4.237e+00	0.0478	117.0	4.22%	224.2	3.43%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-1	-4.228e+00	0.0480	100.0	3.61%	188.3	2.88%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-4.225e+00	0.0480	294.0	10.61%	612.4	9.38%
SeqBias: A/T bias	WWWWWWWWWW	1e-1	-4.224e+00	0.0480	2754.0	99.42%	6467.1	99.02%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-1	-4.215e+00	0.0481	792.0	28.59%	1746.2	26.74%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-1	-4.209e+00	0.0483	161.0	5.81%	319.5	4.89%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-1	-4.207e+00	0.0483	785.0	28.34%	1730.1	26.49%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-4.196e+00	0.0485	17.0	0.61%	22.5	0.34%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e-1	-4.183e+00	0.0490	87.0	3.14%	161.3	2.47%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e-1	-4.168e+00	0.0496	170.0	6.14%	339.5	5.20%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e-1	-4.161e+00	0.0497	104.0	3.75%	197.2	3.02%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-4.130e+00	0.0511	70.0	2.53%	126.6	1.94%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-1	-4.125e+00	0.0512	402.0	14.51%	856.7	13.12%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-4.117e+00	0.0515	204.0	7.36%	415.0	6.35%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-1	-4.094e+00	0.0525	728.0	26.28%	1601.6	24.52%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-4.079e+00	0.0531	272.0	9.82%	565.9	8.66%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e-1	-4.067e+00	0.0535	211.0	7.62%	430.4	6.59%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e-1	-4.041e+00	0.0548	119.0	4.30%	230.8	3.53%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e-1	-4.028e+00	0.0553	58.0	2.09%	102.1	1.56%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-1	-4.021e+00	0.0555	85.0	3.07%	158.8	2.43%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-1	-4.009e+00	0.0560	832.0	30.04%	1843.2	28.22%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e-1	-4.008e+00	0.0560	84.0	3.03%	156.7	2.40%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e-1	-3.993e+00	0.0565	651.0	23.50%	1426.4	21.84%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e-1	-3.979e+00	0.0571	100.0	3.61%	190.6	2.92%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e-1	-3.979e+00	0.0571	70.0	2.53%	127.2	1.95%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-1	-3.952e+00	0.0583	127.0	4.58%	248.4	3.80%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e-1	-3.934e+00	0.0591	424.0	15.31%	909.1	13.92%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e-1	-3.933e+00	0.0591	167.0	6.03%	335.4	5.14%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e-1	-3.916e+00	0.0598	166.0	5.99%	333.4	5.10%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.889e+00	0.0613	498.0	17.98%	1078.1	16.51%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e-1	-3.879e+00	0.0617	592.0	21.37%	1293.7	19.81%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-1	-3.871e+00	0.0620	122.0	4.40%	238.6	3.65%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e-1	-3.864e+00	0.0622	318.0	11.48%	671.9	10.29%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e-1	-3.861e+00	0.0622	276.0	9.96%	577.8	8.85%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-1	-3.852e+00	0.0625	452.0	16.32%	974.2	14.92%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-1	-3.827e+00	0.0640	483.0	17.44%	1045.6	16.01%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.804e+00	0.0652	170.0	6.14%	343.7	5.26%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-3.800e+00	0.0653	48.0	1.73%	84.0	1.29%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-3.797e+00	0.0653	67.0	2.42%	122.5	1.88%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-1	-3.796e+00	0.0653	38.0	1.37%	63.5	0.97%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e-1	-3.775e+00	0.0663	275.0	9.93%	576.7	8.83%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e-1	-3.760e+00	0.0671	405.0	14.62%	869.2	13.31%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e-1	-3.714e+00	0.0700	180.0	6.50%	366.1	5.61%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-3.711e+00	0.0700	125.0	4.51%	246.9	3.78%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-3.704e+00	0.0703	816.0	29.46%	1813.9	27.77%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e-1	-3.684e+00	0.0715	56.0	2.02%	101.0	1.55%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e-1	-3.674e+00	0.0720	310.0	11.19%	656.9	10.06%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-3.664e+00	0.0725	172.0	6.21%	349.4	5.35%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-3.660e+00	0.0726	109.0	3.94%	212.5	3.25%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.648e+00	0.0732	94.0	3.39%	180.7	2.77%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-1	-3.638e+00	0.0737	575.0	20.76%	1259.3	19.28%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-1	-3.636e+00	0.0737	530.0	19.13%	1156.2	17.70%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-3.622e+00	0.0745	143.0	5.16%	286.5	4.39%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e-1	-3.615e+00	0.0747	137.0	4.95%	273.6	4.19%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-1	-3.588e+00	0.0766	141.0	5.09%	283.0	4.33%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-1	-3.582e+00	0.0768	635.0	22.92%	1398.3	21.41%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-1	-3.575e+00	0.0771	219.0	7.91%	454.4	6.96%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e-1	-3.560e+00	0.0780	22.0	0.79%	33.1	0.51%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-1	-3.540e+00	0.0794	87.0	3.14%	166.6	2.55%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e-1	-3.515e+00	0.0811	55.0	1.99%	99.0	1.52%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-3.513e+00	0.0811	173.0	6.25%	353.1	5.41%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-3.509e+00	0.0811	85.0	3.07%	162.4	2.49%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-3.479e+00	0.0834	732.0	26.43%	1624.3	24.87%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-3.465e+00	0.0843	666.0	24.04%	1472.5	22.55%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e-1	-3.464e+00	0.0843	128.0	4.62%	255.2	3.91%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e-1	-3.441e+00	0.0858	279.0	10.07%	590.2	9.04%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1	-3.439e+00	0.0858	564.0	20.36%	1238.8	18.97%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-1	-3.439e+00	0.0858	295.0	10.65%	626.7	9.60%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.436e+00	0.0858	132.0	4.77%	264.0	4.04%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-1	-3.429e+00	0.0859	405.0	14.62%	875.3	13.40%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-1	-3.417e+00	0.0867	772.0	27.87%	1718.2	26.31%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e-1	-3.394e+00	0.0884	690.0	24.91%	1529.9	23.42%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-1	-3.368e+00	0.0905	91.0	3.29%	176.3	2.70%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-3.357e+00	0.0912	348.0	12.56%	747.6	11.45%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-3.354e+00	0.0912	97.0	3.50%	189.2	2.90%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.346e+00	0.0917	103.0	3.72%	202.5	3.10%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-1	-3.342e+00	0.0919	763.0	27.55%	1699.4	26.02%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-1	-3.330e+00	0.0927	288.0	10.40%	612.4	9.38%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-1	-3.321e+00	0.0933	190.0	6.86%	393.1	6.02%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-1	-3.290e+00	0.0959	61.0	2.20%	113.0	1.73%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e-1	-3.263e+00	0.0980	15.0	0.54%	21.2	0.32%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-1	-3.263e+00	0.0980	15.0	0.54%	21.1	0.32%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.258e+00	0.0983	686.0	24.77%	1523.1	23.32%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e-1	-3.248e+00	0.0990	181.0	6.53%	374.6	5.73%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e-1	-3.223e+00	0.1012	26.0	0.94%	43.0	0.66%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-3.220e+00	0.1012	1965.0	70.94%	4532.9	69.40%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-1	-3.217e+00	0.1012	493.0	17.80%	1080.7	16.55%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-1	-3.206e+00	0.1020	88.0	3.18%	171.6	2.63%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e-1	-3.201e+00	0.1023	73.0	2.64%	139.2	2.13%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e-1	-3.197e+00	0.1025	243.0	8.77%	513.2	7.86%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e-1	-3.194e+00	0.1025	32.0	1.16%	54.0	0.83%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e-1	-3.186e+00	0.1030	234.0	8.45%	494.0	7.56%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-3.182e+00	0.1032	163.0	5.88%	335.9	5.14%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-1	-3.162e+00	0.1050	701.0	25.31%	1560.7	23.90%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-3.134e+00	0.1076	718.0	25.92%	1600.7	24.51%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-3.123e+00	0.1085	140.0	5.05%	285.2	4.37%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e-1	-3.101e+00	0.1106	6.0	0.22%	7.0	0.11%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e-1	-3.082e+00	0.1125	56.0	2.02%	104.6	1.60%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-3.080e+00	0.1125	359.0	12.96%	777.4	11.90%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e-1	-3.071e+00	0.1131	391.0	14.12%	850.1	13.02%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-1	-3.056e+00	0.1145	104.0	3.75%	207.6	3.18%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-1	-3.031e+00	0.1171	38.0	1.37%	67.5	1.03%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-1	-3.027e+00	0.1172	52.0	1.88%	96.5	1.48%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.017e+00	0.1181	992.0	35.81%	2240.1	34.30%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-1	-3.004e+00	0.1193	339.0	12.24%	733.9	11.24%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.001e+00	0.1194	112.0	4.04%	225.3	3.45%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e-1	-2.994e+00	0.1200	27.0	0.97%	45.4	0.70%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e-1	-2.992e+00	0.1200	30.0	1.08%	51.7	0.79%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e-1	-2.980e+00	0.1210	315.0	11.37%	679.4	10.40%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e-1	-2.963e+00	0.1227	150.0	5.42%	309.3	4.74%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-1	-2.963e+00	0.1227	47.0	1.70%	86.5	1.32%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e-1	-2.955e+00	0.1231	494.0	17.83%	1088.1	16.66%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-2.951e+00	0.1232	92.0	3.32%	182.4	2.79%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e-1	-2.927e+00	0.1260	71.0	2.56%	137.5	2.11%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-2.922e+00	0.1263	505.0	18.23%	1114.2	17.06%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e-1	-2.908e+00	0.1277	3.0	0.11%	2.9	0.04%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.877e+00	0.1314	68.0	2.45%	131.5	2.01%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e-1	-2.869e+00	0.1322	81.0	2.92%	159.2	2.44%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-2.863e+00	0.1326	762.0	27.51%	1709.0	26.17%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e-1	-2.858e+00	0.1329	490.0	17.69%	1081.8	16.56%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-2.857e+00	0.1329	50.0	1.81%	93.6	1.43%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e-1	-2.849e+00	0.1335	18.0	0.65%	28.1	0.43%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-2.844e+00	0.1338	73.0	2.64%	142.6	2.18%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.836e+00	0.1346	174.0	6.28%	364.9	5.59%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-1	-2.834e+00	0.1346	79.0	2.85%	155.8	2.39%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-1	-2.829e+00	0.1349	48.0	1.73%	89.8	1.37%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.826e+00	0.1349	827.0	29.86%	1861.0	28.49%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e-1	-2.803e+00	0.1377	400.0	14.44%	876.6	13.42%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-1	-2.785e+00	0.1398	331.0	11.95%	719.7	11.02%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-1	-2.781e+00	0.1400	120.0	4.33%	245.7	3.76%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-2.775e+00	0.1405	517.0	18.66%	1145.3	17.54%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-1	-2.773e+00	0.1405	540.0	19.49%	1198.2	18.35%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-1	-2.764e+00	0.1415	949.0	34.26%	2147.5	32.88%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e-1	-2.762e+00	0.1415	12.0	0.43%	17.9	0.27%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e-1	-2.747e+00	0.1431	5.0	0.18%	5.4	0.08%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-2.746e+00	0.1431	321.0	11.59%	697.5	10.68%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e-1	-2.743e+00	0.1431	896.0	32.35%	2024.2	30.99%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-1	-2.739e+00	0.1433	474.0	17.11%	1047.9	16.04%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-2.737e+00	0.1433	1033.0	37.29%	2344.9	35.90%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-1	-2.731e+00	0.1437	363.0	13.10%	793.5	12.15%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e-1	-2.725e+00	0.1442	213.0	7.69%	453.6	6.94%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e-1	-2.709e+00	0.1463	379.0	13.68%	830.5	12.72%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e-1	-2.686e+00	0.1492	2.0	0.07%	0.0	0.00%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-2.671e+00	0.1511	462.0	16.68%	1021.6	15.64%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-2.665e+00	0.1517	431.0	15.56%	950.8	14.56%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-1	-2.664e+00	0.1517	1184.0	42.74%	2700.7	41.35%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e-1	-2.663e+00	0.1517	35.0	1.26%	63.2	0.97%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.650e+00	0.1529	1116.0	40.29%	2541.5	38.91%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-1	-2.630e+00	0.1557	1475.0	53.25%	3386.8	51.86%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e-1	-2.628e+00	0.1557	380.0	13.72%	834.8	12.78%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-1	-2.617e+00	0.1570	573.0	20.69%	1278.8	19.58%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e-1	-2.581e+00	0.1623	25.0	0.90%	43.2	0.66%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-1	-2.564e+00	0.1646	919.0	33.18%	2084.0	31.91%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-2.542e+00	0.1680	495.0	17.87%	1100.9	16.86%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-2.539e+00	0.1681	55.0	1.99%	106.9	1.64%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.527e+00	0.1698	1200.0	43.32%	2742.0	41.98%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e-1	-2.519e+00	0.1707	616.0	22.24%	1380.1	21.13%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-1	-2.518e+00	0.1707	818.0	29.53%	1849.8	28.32%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e-1	-2.515e+00	0.1707	36.0	1.30%	66.6	1.02%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.511e+00	0.1709	315.0	11.37%	688.4	10.54%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-1	-2.500e+00	0.1725	307.0	11.08%	670.4	10.27%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e-1	-2.499e+00	0.1725	267.0	9.64%	579.3	8.87%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e-1	-2.494e+00	0.1727	514.0	18.56%	1145.5	17.54%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-1	-2.489e+00	0.1731	244.0	8.81%	527.7	8.08%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.487e+00	0.1731	390.0	14.08%	860.9	13.18%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-2.480e+00	0.1740	11.0	0.40%	16.1	0.25%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-2.479e+00	0.1740	430.0	15.52%	953.0	14.59%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-2.471e+00	0.1746	43.0	1.55%	81.2	1.24%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-2.456e+00	0.1769	275.0	9.93%	598.8	9.17%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.443e+00	0.1789	310.0	11.19%	678.7	10.39%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.440e+00	0.1789	694.0	25.05%	1563.2	23.93%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-1	-2.436e+00	0.1792	919.0	33.18%	2087.8	31.97%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-2.427e+00	0.1805	123.0	4.44%	256.3	3.92%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-2.420e+00	0.1814	243.0	8.77%	526.5	8.06%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.389e+00	0.1866	466.0	16.82%	1037.0	15.88%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e-1	-2.378e+00	0.1883	210.0	7.58%	452.2	6.92%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-1	-2.371e+00	0.1893	106.0	3.83%	219.5	3.36%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e-1	-2.367e+00	0.1896	162.0	5.85%	344.6	5.28%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-1	-2.366e+00	0.1896	52.0	1.88%	101.2	1.55%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e-1	-2.363e+00	0.1896	81.0	2.92%	164.4	2.52%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.363e+00	0.1896	444.0	16.03%	987.6	15.12%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-1	-2.360e+00	0.1896	86.0	3.10%	175.6	2.69%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-1	-2.358e+00	0.1896	19.0	0.69%	32.5	0.50%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-1	-2.354e+00	0.1896	932.0	33.65%	2120.6	32.47%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e-1	-2.342e+00	0.1914	85.0	3.07%	173.0	2.65%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e-1	-2.338e+00	0.1918	263.0	9.49%	573.7	8.78%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-1	-2.330e+00	0.1929	438.0	15.81%	974.2	14.92%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-2.326e+00	0.1932	312.0	11.26%	685.8	10.50%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-2.304e+00	0.1972	498.0	17.98%	1113.6	17.05%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-2.302e+00	0.1972	220.0	7.94%	476.7	7.30%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.291e+00	0.1989	378.0	13.65%	837.7	12.83%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-2.291e+00	0.1989	77.0	2.78%	156.8	2.40%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.289e+00	0.1989	87.0	3.14%	178.8	2.74%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-2.288e+00	0.1989	371.0	13.39%	821.6	12.58%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-2.266e+00	0.2022	53.0	1.91%	104.8	1.61%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-2.255e+00	0.2040	365.0	13.18%	808.9	12.39%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-2.251e+00	0.2043	38.0	1.37%	72.7	1.11%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-2.247e+00	0.2047	28.0	1.01%	51.3	0.79%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	-2.229e+00	0.2080	266.0	9.60%	582.1	8.91%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-2.214e+00	0.2107	115.0	4.15%	241.2	3.69%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-2.209e+00	0.2113	428.0	15.45%	954.2	14.61%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.206e+00	0.2115	250.0	9.03%	546.8	8.37%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-2.204e+00	0.2115	566.0	20.43%	1273.2	19.49%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-2.203e+00	0.2115	669.0	24.15%	1512.9	23.16%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.184e+00	0.2150	542.0	19.57%	1218.0	18.65%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-2.181e+00	0.2152	332.0	11.99%	734.1	11.24%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-2.180e+00	0.2152	513.0	18.52%	1151.9	17.64%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-2.165e+00	0.2177	486.0	17.55%	1089.8	16.69%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-2.149e+00	0.2207	19.0	0.69%	33.4	0.51%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-2.132e+00	0.2240	907.0	32.74%	2069.3	31.68%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-2.128e+00	0.2245	802.0	28.95%	1824.7	27.94%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.119e+00	0.2261	30.0	1.08%	56.5	0.87%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-2.094e+00	0.2314	191.0	6.90%	414.2	6.34%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-2.093e+00	0.2314	249.0	8.99%	546.5	8.37%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-2.093e+00	0.2314	342.0	12.35%	759.8	11.63%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-2.082e+00	0.2328	55.0	1.99%	110.7	1.69%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-2.079e+00	0.2328	1025.0	37.00%	2347.2	35.94%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-2.079e+00	0.2328	848.0	30.61%	1933.9	29.61%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.058e+00	0.2368	48.0	1.73%	95.4	1.46%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-2.055e+00	0.2372	162.0	5.85%	349.8	5.36%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.052e+00	0.2373	6.0	0.22%	8.1	0.12%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.040e+00	0.2398	25.0	0.90%	46.6	0.71%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-2.036e+00	0.2403	96.0	3.47%	202.0	3.09%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-2.025e+00	0.2424	24.0	0.87%	44.2	0.68%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-2.022e+00	0.2427	438.0	15.81%	982.6	15.04%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-2.019e+00	0.2429	574.0	20.72%	1297.1	19.86%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-2.018e+00	0.2429	254.0	9.17%	559.1	8.56%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.010e+00	0.2441	23.0	0.83%	42.7	0.65%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-2.007e+00	0.2444	529.0	19.10%	1193.3	18.27%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-2.001e+00	0.2454	45.0	1.62%	89.9	1.38%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.993e+00	0.2469	66.0	2.38%	135.7	2.08%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.990e+00	0.2472	300.0	10.83%	665.9	10.19%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.980e+00	0.2490	402.0	14.51%	900.3	13.78%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.979e+00	0.2490	126.0	4.55%	269.1	4.12%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.969e+00	0.2508	278.0	10.04%	615.4	9.42%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.964e+00	0.2516	229.0	8.27%	503.5	7.71%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-1.957e+00	0.2530	232.0	8.38%	510.5	7.82%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-1.942e+00	0.2563	95.0	3.43%	200.9	3.08%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-1.937e+00	0.2570	220.0	7.94%	483.9	7.41%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-1.937e+00	0.2570	695.0	25.09%	1581.6	24.22%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.926e+00	0.2588	205.0	7.40%	449.5	6.88%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.923e+00	0.2591	41.0	1.48%	81.7	1.25%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-1.917e+00	0.2602	102.0	3.68%	216.5	3.31%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-1.906e+00	0.2626	171.0	6.17%	372.5	5.70%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.897e+00	0.2645	700.0	25.27%	1594.7	24.42%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.893e+00	0.2650	537.0	19.39%	1216.0	18.62%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.888e+00	0.2659	312.0	11.26%	695.1	10.64%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-1.864e+00	0.2719	64.0	2.31%	132.8	2.03%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.863e+00	0.2719	82.0	2.96%	172.1	2.64%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-1.861e+00	0.2719	49.0	1.77%	99.0	1.52%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.848e+00	0.2747	210.0	7.58%	462.8	7.09%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-1.837e+00	0.2772	159.0	5.74%	346.5	5.31%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-1.833e+00	0.2776	347.0	12.53%	777.2	11.90%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.827e+00	0.2788	205.0	7.40%	451.1	6.91%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.824e+00	0.2791	36.0	1.30%	72.0	1.10%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.823e+00	0.2791	598.0	21.59%	1359.1	20.81%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-1.797e+00	0.2858	160.0	5.78%	349.4	5.35%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.793e+00	0.2865	767.0	27.69%	1754.4	26.86%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.787e+00	0.2876	60.0	2.17%	124.6	1.91%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-1.782e+00	0.2885	557.0	20.11%	1265.2	19.37%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.779e+00	0.2888	50.0	1.81%	102.2	1.57%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-1.778e+00	0.2888	94.0	3.39%	200.7	3.07%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-1.758e+00	0.2938	200.0	7.22%	441.8	6.76%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-1.753e+00	0.2948	314.0	11.34%	703.3	10.77%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.751e+00	0.2948	196.0	7.08%	432.4	6.62%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-1.746e+00	0.2956	410.0	14.80%	925.6	14.17%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.738e+00	0.2976	647.0	23.36%	1476.2	22.60%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-1.734e+00	0.2983	598.0	21.59%	1362.8	20.87%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-1.732e+00	0.2983	322.0	11.62%	722.5	11.06%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.731e+00	0.2983	256.0	9.24%	570.5	8.74%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.728e+00	0.2983	83.0	3.00%	176.2	2.70%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-1.728e+00	0.2983	66.0	2.38%	138.4	2.12%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.726e+00	0.2983	95.0	3.43%	203.0	3.11%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.724e+00	0.2983	225.0	8.12%	499.9	7.65%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-1.714e+00	0.3005	24.0	0.87%	46.0	0.70%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.706e+00	0.3022	36.0	1.30%	72.1	1.10%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.700e+00	0.3036	487.0	17.58%	1105.9	16.93%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-1.682e+00	0.3084	635.0	22.92%	1450.4	22.21%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.680e+00	0.3084	353.0	12.74%	796.0	12.19%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.677e+00	0.3088	152.0	5.49%	333.3	5.10%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.673e+00	0.3090	84.0	3.03%	179.7	2.75%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.673e+00	0.3090	84.0	3.03%	179.5	2.75%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.662e+00	0.3117	151.0	5.45%	331.9	5.08%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-1.650e+00	0.3149	516.0	18.63%	1174.4	17.98%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.646e+00	0.3158	157.0	5.67%	345.1	5.28%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-1.642e+00	0.3163	340.0	12.27%	766.1	11.73%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-1.635e+00	0.3181	1139.0	41.12%	2632.2	40.30%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.630e+00	0.3191	517.0	18.66%	1177.5	18.03%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.628e+00	0.3193	116.0	4.19%	252.6	3.87%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-1.621e+00	0.3208	32.0	1.16%	64.3	0.98%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-1.620e+00	0.3208	77.0	2.78%	164.2	2.51%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-1.617e+00	0.3211	169.0	6.10%	373.0	5.71%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.594e+00	0.3281	188.0	6.79%	417.7	6.40%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.589e+00	0.3292	91.0	3.29%	196.1	3.00%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-1.571e+00	0.3343	90.0	3.25%	194.9	2.98%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-1.569e+00	0.3344	62.0	2.24%	131.4	2.01%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-1.568e+00	0.3344	49.0	1.77%	102.3	1.57%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-1.567e+00	0.3344	2.0	0.07%	2.2	0.03%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.567e+00	0.3344	2.0	0.07%	2.4	0.04%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-1.564e+00	0.3344	586.0	21.16%	1340.6	20.53%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-1.542e+00	0.3409	244.0	8.81%	547.9	8.39%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.540e+00	0.3409	92.0	3.32%	199.4	3.05%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.530e+00	0.3438	149.0	5.38%	329.7	5.05%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.528e+00	0.3438	68.0	2.45%	145.5	2.23%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-1.511e+00	0.3488	235.0	8.48%	527.7	8.08%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.509e+00	0.3491	37.0	1.34%	76.9	1.18%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-1.504e+00	0.3501	418.0	15.09%	952.0	14.58%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.492e+00	0.3538	587.0	21.19%	1345.8	20.61%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-1.485e+00	0.3557	125.0	4.51%	275.5	4.22%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-1.477e+00	0.3579	176.0	6.35%	392.4	6.01%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-1.475e+00	0.3582	600.0	21.66%	1376.2	21.07%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.471e+00	0.3591	99.0	3.57%	216.1	3.31%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-1.465e+00	0.3603	25.0	0.90%	50.9	0.78%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.464e+00	0.3603	330.0	11.91%	748.4	11.46%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-1.449e+00	0.3651	606.0	21.88%	1391.6	21.31%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-1.441e+00	0.3672	497.0	17.94%	1137.7	17.42%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.417e+00	0.3758	632.0	22.82%	1453.6	22.26%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.398e+00	0.3823	305.0	11.01%	692.1	10.60%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.395e+00	0.3829	22.0	0.79%	45.0	0.69%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-1.394e+00	0.3829	270.0	9.75%	611.3	9.36%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.388e+00	0.3840	260.0	9.39%	588.3	9.01%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.387e+00	0.3840	491.0	17.73%	1125.9	17.24%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.386e+00	0.3840	101.0	3.65%	222.8	3.41%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-1.383e+00	0.3841	313.0	11.30%	711.7	10.90%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.383e+00	0.3841	7.0	0.25%	12.2	0.19%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.381e+00	0.3841	253.0	9.13%	573.0	8.77%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-1.377e+00	0.3844	111.0	4.01%	246.0	3.77%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-1.374e+00	0.3852	128.0	4.62%	284.1	4.35%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-1.355e+00	0.3919	238.0	8.59%	538.3	8.24%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-1.352e+00	0.3923	47.0	1.70%	100.7	1.54%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.351e+00	0.3923	150.0	5.42%	335.9	5.14%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.346e+00	0.3929	20.0	0.72%	40.6	0.62%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-1.346e+00	0.3929	20.0	0.72%	40.3	0.62%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-1.342e+00	0.3938	34.0	1.23%	71.8	1.10%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.340e+00	0.3938	208.0	7.51%	469.6	7.19%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-1.332e+00	0.3963	50.0	1.81%	107.7	1.65%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.314e+00	0.4029	294.0	10.61%	669.0	10.24%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-1.307e+00	0.4050	509.0	18.38%	1170.2	17.92%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.305e+00	0.4053	823.0	29.71%	1905.1	29.17%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.297e+00	0.4078	233.0	8.41%	528.5	8.09%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.295e+00	0.4078	679.0	24.51%	1568.6	24.02%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-1.291e+00	0.4091	175.0	6.32%	394.1	6.03%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.273e+00	0.4152	2770.0	100.00%	6529.0	99.97%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.273e+00	0.4152	2770.0	100.00%	6528.7	99.96%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-1.273e+00	0.4152	31.0	1.12%	65.6	1.00%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-1.267e+00	0.4160	39.0	1.41%	83.5	1.28%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.264e+00	0.4169	578.0	20.87%	1333.9	20.42%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-1.255e+00	0.4198	169.0	6.10%	381.6	5.84%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.245e+00	0.4233	391.0	14.12%	897.0	13.73%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.231e+00	0.4286	335.0	12.09%	767.0	11.74%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-1.223e+00	0.4314	322.0	11.62%	737.5	11.29%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-1.214e+00	0.4348	188.0	6.79%	427.0	6.54%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.212e+00	0.4350	66.0	2.38%	145.3	2.22%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.200e+00	0.4396	32.0	1.16%	68.4	1.05%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.167e+00	0.4533	292.0	10.54%	670.0	10.26%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-1.163e+00	0.4546	1831.0	66.10%	4287.1	65.64%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.152e+00	0.4589	7.0	0.25%	14.0	0.21%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.148e+00	0.4597	66.0	2.38%	146.9	2.25%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-1.143e+00	0.4614	179.0	6.46%	407.1	6.23%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.138e+00	0.4633	55.0	1.99%	121.3	1.86%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.116e+00	0.4726	81.0	2.92%	181.8	2.78%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.098e+00	0.4803	46.0	1.66%	101.6	1.56%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-1.079e+00	0.4888	15.0	0.54%	31.8	0.49%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.068e+00	0.4935	185.0	6.68%	423.6	6.49%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-1.065e+00	0.4945	58.0	2.09%	129.9	1.99%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-1.057e+00	0.4974	37.0	1.34%	81.7	1.25%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.042e+00	0.5041	70.0	2.53%	157.9	2.42%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.037e+00	0.5062	43.0	1.55%	95.8	1.47%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-1.027e+00	0.5101	56.0	2.02%	125.8	1.93%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-1.021e+00	0.5124	814.0	29.39%	1898.4	29.07%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-1.017e+00	0.5136	75.0	2.71%	169.9	2.60%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-1.017e+00	0.5136	116.0	4.19%	264.4	4.05%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-1.012e+00	0.5139	2.0	0.07%	3.3	0.05%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-1.012e+00	0.5139	2.0	0.07%	3.2	0.05%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-1.009e+00	0.5147	237.0	8.56%	546.8	8.37%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-1.003e+00	0.5168	58.0	2.09%	130.3	2.00%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-9.985e-01	0.5186	316.0	11.41%	731.9	11.21%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-9.970e-01	0.5186	130.0	4.69%	297.1	4.55%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-9.969e-01	0.5186	357.0	12.89%	827.5	12.67%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-9.942e-01	0.5186	342.0	12.35%	792.9	12.14%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.900e-01	0.5191	34.0	1.23%	75.0	1.15%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.900e-01	0.5191	34.0	1.23%	75.0	1.15%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-9.839e-01	0.5214	2024.0	73.07%	4753.7	72.78%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-9.798e-01	0.5228	150.0	5.42%	344.6	5.28%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-9.777e-01	0.5231	171.0	6.17%	393.9	6.03%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-9.772e-01	0.5231	63.0	2.27%	142.6	2.18%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-9.652e-01	0.5281	559.0	20.18%	1302.7	19.95%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-9.566e-01	0.5319	15.0	0.54%	32.5	0.50%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-9.561e-01	0.5319	199.0	7.18%	459.4	7.03%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-9.512e-01	0.5332	11.0	0.40%	23.3	0.36%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-9.371e-01	0.5399	18.0	0.65%	39.7	0.61%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-9.362e-01	0.5399	206.0	7.44%	477.0	7.30%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-9.314e-01	0.5414	76.0	2.74%	173.5	2.66%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-9.266e-01	0.5432	261.0	9.42%	605.0	9.26%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-9.246e-01	0.5434	196.0	7.08%	453.8	6.95%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-9.215e-01	0.5444	169.0	6.10%	390.0	5.97%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-9.200e-01	0.5444	148.0	5.34%	341.9	5.23%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-9.094e-01	0.5493	37.0	1.34%	84.0	1.29%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-8.979e-01	0.5549	80.0	2.89%	183.1	2.80%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-8.944e-01	0.5560	116.0	4.19%	267.3	4.09%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-8.925e-01	0.5562	932.0	33.65%	2183.3	33.43%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-8.921e-01	0.5562	13.0	0.47%	28.7	0.44%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-8.702e-01	0.5671	126.0	4.55%	291.0	4.46%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-8.669e-01	0.5681	19.0	0.69%	42.6	0.65%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-8.654e-01	0.5682	263.0	9.49%	612.7	9.38%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-8.553e-01	0.5731	230.0	8.30%	535.1	8.19%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-8.545e-01	0.5731	282.0	10.18%	657.6	10.07%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-8.543e-01	0.5731	104.0	3.75%	240.2	3.68%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-8.534e-01	0.5731	59.0	2.13%	136.0	2.08%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-8.519e-01	0.5731	622.0	22.45%	1456.3	22.30%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-8.508e-01	0.5731	871.0	31.44%	2042.3	31.27%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-8.484e-01	0.5731	2770.0	100.00%	6529.7	99.98%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-8.463e-01	0.5731	743.0	26.82%	1741.1	26.66%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-8.416e-01	0.5743	106.0	3.83%	245.1	3.75%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-8.376e-01	0.5757	369.0	13.32%	862.1	13.20%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-8.367e-01	0.5757	52.0	1.88%	119.2	1.83%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-8.325e-01	0.5770	120.0	4.33%	278.4	4.26%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-8.242e-01	0.5810	575.0	20.76%	1347.2	20.63%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-8.232e-01	0.5810	30.0	1.08%	68.5	1.05%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-8.206e-01	0.5814	4.0	0.14%	8.9	0.14%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.192e-01	0.5814	116.0	4.19%	269.1	4.12%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-8.188e-01	0.5814	203.0	7.33%	473.0	7.24%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-8.170e-01	0.5814	246.0	8.88%	574.0	8.79%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-7.943e-01	0.5935	403.0	14.55%	944.8	14.47%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-7.914e-01	0.5944	134.0	4.84%	312.0	4.78%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-7.849e-01	0.5974	10.0	0.36%	22.9	0.35%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-7.782e-01	0.6006	37.0	1.34%	85.1	1.30%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-7.714e-01	0.6038	63.0	2.27%	146.4	2.24%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-7.600e-01	0.6099	3.0	0.11%	6.5	0.10%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-7.467e-01	0.6172	399.0	14.40%	937.8	14.36%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-7.418e-01	0.6193	449.0	16.21%	1055.9	16.17%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-7.348e-01	0.6228	75.0	2.71%	175.6	2.69%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-7.346e-01	0.6228	55.0	1.99%	128.9	1.97%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-7.337e-01	0.6228	32.0	1.16%	74.9	1.15%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-7.280e-01	0.6244	385.0	13.90%	905.2	13.86%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.243e-01	0.6258	43.0	1.55%	100.3	1.54%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-7.221e-01	0.6263	735.0	26.53%	1730.9	26.50%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-7.158e-01	0.6294	717.0	25.88%	1688.5	25.85%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-7.079e-01	0.6336	28.0	1.01%	65.3	1.00%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-7.064e-01	0.6336	365.0	13.18%	859.5	13.16%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-7.049e-01	0.6337	87.0	3.14%	204.3	3.13%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-6.940e-01	0.6397	47.0	1.70%	110.1	1.69%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.938e-01	0.6397	19.0	0.69%	44.2	0.68%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-6.848e-01	0.6439	292.0	10.54%	688.2	10.54%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-6.670e-01	0.6545	323.0	11.66%	762.4	11.67%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-6.670e-01	0.6545	51.0	1.84%	121.0	1.85%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-6.592e-01	0.6578	868.0	31.34%	2048.7	31.37%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-6.562e-01	0.6589	302.0	10.90%	713.5	10.93%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.475e-01	0.6637	262.0	9.46%	619.9	9.49%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-6.461e-01	0.6637	121.0	4.37%	286.7	4.39%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.403e-01	0.6667	44.0	1.59%	104.7	1.60%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-6.398e-01	0.6667	308.0	11.12%	729.0	11.16%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-6.397e-01	0.6667	93.0	3.36%	220.0	3.37%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-6.302e-01	0.6707	1138.0	41.08%	2687.9	41.15%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-6.213e-01	0.6758	355.0	12.82%	840.2	12.86%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-6.185e-01	0.6767	113.0	4.08%	268.3	4.11%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-6.157e-01	0.6777	255.0	9.21%	604.1	9.25%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.129e-01	0.6787	24.0	0.87%	57.5	0.88%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.067e-01	0.6820	16.0	0.58%	38.6	0.59%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-6.055e-01	0.6820	101.0	3.65%	240.9	3.69%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-5.994e-01	0.6852	47.0	1.70%	112.5	1.72%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-5.956e-01	0.6868	119.0	4.30%	283.3	4.34%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-5.947e-01	0.6868	92.0	3.32%	219.7	3.36%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-5.946e-01	0.6868	52.0	1.88%	124.3	1.90%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-5.917e-01	0.6868	13.0	0.47%	31.7	0.49%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.902e-01	0.6868	659.0	23.79%	1560.2	23.89%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-5.864e-01	0.6885	41.0	1.48%	98.9	1.51%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-5.824e-01	0.6903	33.0	1.19%	79.2	1.21%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-5.763e-01	0.6936	15.0	0.54%	36.0	0.55%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-5.748e-01	0.6937	293.0	10.58%	696.5	10.66%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-5.717e-01	0.6949	10.0	0.36%	24.2	0.37%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-5.678e-01	0.6967	111.0	4.01%	265.1	4.06%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-5.594e-01	0.7017	68.0	2.45%	163.0	2.50%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-5.525e-01	0.7056	29.0	1.05%	70.6	1.08%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-5.418e-01	0.7122	454.0	16.39%	1079.9	16.53%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-5.415e-01	0.7122	383.0	13.83%	911.0	13.95%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-5.409e-01	0.7122	41.0	1.48%	99.7	1.53%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-5.294e-01	0.7183	243.0	8.77%	580.5	8.89%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.255e-01	0.7202	272.0	9.82%	649.7	9.95%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-5.122e-01	0.7288	667.0	24.08%	1585.9	24.28%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-5.100e-01	0.7295	27.0	0.97%	66.8	1.02%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-5.077e-01	0.7302	551.0	19.89%	1311.5	20.08%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.071e-01	0.7302	54.0	1.95%	131.4	2.01%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-5.068e-01	0.7302	674.0	24.33%	1602.7	24.54%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-5.019e-01	0.7315	149.0	5.38%	358.7	5.49%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-5.006e-01	0.7315	191.0	6.90%	458.4	7.02%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-4.983e-01	0.7323	41.0	1.48%	100.5	1.54%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-4.904e-01	0.7371	4.0	0.14%	10.7	0.16%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-4.903e-01	0.7371	8.0	0.29%	20.4	0.31%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.820e-01	0.7413	113.0	4.08%	273.7	4.19%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-4.749e-01	0.7457	151.0	5.45%	364.9	5.59%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	-4.728e-01	0.7463	79.0	2.85%	192.9	2.95%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-4.709e-01	0.7467	237.0	8.56%	569.7	8.72%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.696e-01	0.7468	475.0	17.15%	1134.8	17.38%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-4.671e-01	0.7477	71.0	2.56%	173.5	2.66%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.637e-01	0.7492	173.0	6.25%	417.2	6.39%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.578e-01	0.7527	264.0	9.53%	634.4	9.71%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-4.543e-01	0.7543	29.0	1.05%	72.5	1.11%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-4.501e-01	0.7565	393.0	14.19%	941.5	14.42%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-4.470e-01	0.7579	145.0	5.23%	351.5	5.38%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-4.429e-01	0.7601	119.0	4.30%	289.6	4.43%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-4.414e-01	0.7602	152.0	5.49%	368.8	5.65%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-4.387e-01	0.7603	5.0	0.18%	13.2	0.20%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-4.387e-01	0.7603	5.0	0.18%	13.5	0.21%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-4.311e-01	0.7651	44.0	1.59%	109.8	1.68%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-4.242e-01	0.7685	2770.0	100.00%	6531.2	100.00%
 Ik-1	NHTTGGGAATRCC	1e0	-4.242e-01	0.7685	2770.0	100.00%	6531.2	100.00%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-4.196e-01	0.7711	34.0	1.23%	85.1	1.30%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-4.183e-01	0.7711	323.0	11.66%	777.1	11.90%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-4.122e-01	0.7748	12.0	0.43%	31.3	0.48%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-4.120e-01	0.7748	118.0	4.26%	288.1	4.41%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-4.011e-01	0.7815	42.0	1.52%	105.9	1.62%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-3.976e-01	0.7832	369.0	13.32%	888.0	13.60%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-3.904e-01	0.7878	113.0	4.08%	277.8	4.25%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-3.675e-01	0.8051	251.0	9.06%	610.0	9.34%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-3.616e-01	0.8089	112.0	4.04%	276.1	4.23%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.561e-01	0.8123	444.0	16.03%	1070.9	16.40%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-3.289e-01	0.8336	191.0	6.90%	468.8	7.18%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-3.286e-01	0.8336	1.0	0.04%	3.8	0.06%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-3.262e-01	0.8338	203.0	7.33%	497.5	7.62%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-3.233e-01	0.8352	195.0	7.04%	478.6	7.33%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-3.170e-01	0.8394	90.0	3.25%	225.5	3.45%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-3.131e-01	0.8416	78.0	2.82%	196.9	3.01%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-3.105e-01	0.8428	396.0	14.30%	960.3	14.70%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.100e-01	0.8428	662.0	23.90%	1594.0	24.41%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-3.092e-01	0.8428	3.0	0.11%	9.7	0.15%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.051e-01	0.8442	234.0	8.45%	573.2	8.78%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.014e-01	0.8463	404.0	14.58%	980.9	15.02%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.993e-01	0.8463	33.0	1.19%	86.5	1.32%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.993e-01	0.8463	33.0	1.19%	86.1	1.32%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.909e-01	0.8520	4.0	0.14%	12.6	0.19%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.850e-01	0.8560	295.0	10.65%	721.7	11.05%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-2.822e-01	0.8573	217.0	7.83%	534.7	8.19%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-2.782e-01	0.8597	20.0	0.72%	54.4	0.83%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.703e-01	0.8655	35.0	1.26%	92.5	1.42%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.676e-01	0.8668	246.0	8.88%	605.9	9.28%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-2.571e-01	0.8748	526.0	18.99%	1276.9	19.55%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.563e-01	0.8748	32.0	1.16%	85.5	1.31%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-2.543e-01	0.8751	28.0	1.01%	75.2	1.15%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-2.481e-01	0.8795	15.0	0.54%	42.1	0.65%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.481e-01	0.8795	286.0	10.32%	704.0	10.78%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.473e-01	0.8795	630.0	22.74%	1525.7	23.36%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.460e-01	0.8795	207.0	7.47%	513.5	7.86%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-2.427e-01	0.8800	317.0	11.44%	778.2	11.91%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-2.425e-01	0.8800	31.0	1.12%	84.0	1.29%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-2.406e-01	0.8800	85.0	3.07%	217.1	3.32%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-2.361e-01	0.8826	457.0	16.50%	1114.3	17.06%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-2.346e-01	0.8828	93.0	3.36%	237.3	3.63%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-2.336e-01	0.8828	16.0	0.58%	45.1	0.69%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.324e-01	0.8828	36.0	1.30%	96.9	1.48%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-2.323e-01	0.8828	52.0	1.88%	136.5	2.09%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.289e-01	0.8836	3.0	0.11%	10.7	0.16%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-2.281e-01	0.8836	498.0	17.98%	1213.1	18.57%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.270e-01	0.8836	28.0	1.01%	76.3	1.17%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-2.096e-01	0.8976	579.0	20.90%	1409.1	21.58%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-2.024e-01	0.9030	1.0	0.04%	4.4	0.07%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.009e-01	0.9033	112.0	4.04%	286.8	4.39%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-1.970e-01	0.9057	19.0	0.69%	54.2	0.83%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-1.969e-01	0.9057	96.0	3.47%	247.3	3.79%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-1.903e-01	0.9096	38.0	1.37%	103.9	1.59%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.865e-01	0.9119	20.0	0.72%	57.2	0.88%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-1.790e-01	0.9177	58.0	2.09%	154.1	2.36%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	-1.763e-01	0.9191	125.0	4.51%	320.5	4.91%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.703e-01	0.9236	4.0	0.14%	14.1	0.22%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-1.702e-01	0.9236	189.0	6.82%	477.8	7.32%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.691e-01	0.9236	3.0	0.11%	11.0	0.17%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-1.643e-01	0.9258	14.0	0.51%	43.0	0.66%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.625e-01	0.9264	485.0	17.51%	1192.3	18.26%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.622e-01	0.9264	88.0	3.18%	230.5	3.53%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e0	-1.405e-01	0.9447	192.0	6.93%	488.8	7.48%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.314e-01	0.9523	46.0	1.66%	127.7	1.96%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.277e-01	0.9547	1.0	0.04%	5.2	0.08%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.225e-01	0.9585	220.0	7.94%	559.3	8.56%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-1.220e-01	0.9585	20.0	0.72%	60.2	0.92%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.182e-01	0.9604	446.0	16.10%	1107.1	16.95%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-1.158e-01	0.9616	97.0	3.50%	257.2	3.94%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.153e-01	0.9616	81.0	2.92%	217.2	3.32%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.111e-01	0.9638	38.0	1.37%	108.1	1.66%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.090e-01	0.9647	206.0	7.44%	527.7	8.08%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-1.057e-01	0.9668	146.0	5.27%	380.9	5.83%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.040e-01	0.9673	49.0	1.77%	137.8	2.11%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-9.703e-02	0.9730	41.0	1.48%	117.5	1.80%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-9.630e-02	0.9730	28.0	1.01%	83.5	1.28%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-9.590e-02	0.9730	504.0	18.19%	1252.2	19.17%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-9.248e-02	0.9740	74.0	2.67%	202.3	3.10%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-8.629e-02	0.9789	115.0	4.15%	306.7	4.70%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-8.607e-02	0.9789	51.0	1.84%	144.4	2.21%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-8.299e-02	0.9799	128.0	4.62%	339.4	5.20%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-8.164e-02	0.9801	1.0	0.04%	6.3	0.10%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-8.015e-02	0.9804	71.0	2.56%	196.6	3.01%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-7.006e-02	0.9892	26.0	0.94%	80.3	1.23%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.679e-02	0.9913	3.0	0.11%	14.4	0.22%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-6.416e-02	0.9928	311.0	11.23%	794.2	12.16%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-5.984e-02	0.9959	62.0	2.24%	176.5	2.70%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-5.686e-02	0.9978	68.0	2.45%	192.0	2.94%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.541e-02	0.9981	234.0	8.45%	608.0	9.31%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-5.401e-02	0.9983	44.0	1.59%	130.6	2.00%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-5.380e-02	0.9983	29.0	1.05%	90.8	1.39%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.371e-02	0.9983	406.0	14.66%	1029.8	15.77%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-5.306e-02	0.9983	79.0	2.85%	221.7	3.39%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.960e-02	0.9983	31.0	1.12%	96.1	1.47%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.911e-02	0.9983	153.0	5.52%	410.0	6.28%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.465e-02	1.0000	1050.0	37.91%	2578.2	39.47%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-4.103e-02	1.0000	9.0	0.32%	35.2	0.54%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-4.043e-02	1.0000	117.0	4.22%	321.9	4.93%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.535e-02	1.0000	286.0	10.32%	744.1	11.39%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.479e-02	1.0000	92.0	3.32%	259.1	3.97%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-3.307e-02	1.0000	131.0	4.73%	359.3	5.50%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-3.156e-02	1.0000	39.0	1.41%	122.0	1.87%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.511e-02	1.0000	38.0	1.37%	120.3	1.84%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-2.057e-02	1.0000	20.0	0.72%	71.8	1.10%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.862e-02	1.0000	392.0	14.15%	1016.8	15.57%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-1.789e-02	1.0000	47.0	1.70%	147.2	2.25%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.760e-02	1.0000	54.0	1.95%	166.5	2.55%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.742e-02	1.0000	144.0	5.20%	400.8	6.14%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-1.177e-02	1.0000	298.0	10.76%	793.0	12.14%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-9.801e-03	1.0000	21.0	0.76%	78.5	1.20%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-9.215e-03	1.0000	8.0	0.29%	38.9	0.60%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-8.868e-03	1.0000	105.0	3.79%	307.4	4.71%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.549e-03	1.0000	689.0	24.87%	1759.4	26.94%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.299e-03	1.0000	491.0	17.73%	1295.8	19.84%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-6.790e-04	1.0000	201.0	7.26%	583.1	8.93%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.180e-04	1.0000	489.0	17.65%	1310.1	20.06%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.480e-04	1.0000	515.0	18.59%	1377.0	21.08%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-2.900e-04	1.0000	128.0	4.62%	399.2	6.11%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.880e-04	1.0000	384.0	13.86%	1064.9	16.30%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-5.100e-05	1.0000	280.0	10.11%	814.6	12.47%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.000e-06	1.0000	345.0	12.45%	1026.3	15.71%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-0.000e+00	1.0000	395.0	14.26%	1167.3	17.87%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-0.000e+00	1.0000	467.0	16.86%	1386.3	21.23%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-0.000e+00	1.0000	534.0	19.28%	1603.0	24.54%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-0.000e+00	1.0000	691.0	24.95%	2014.7	30.85%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-0.000e+00	1.0000	802.0	28.95%	2298.6	35.19%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	0.000e+00	1.0000	614.0	22.17%	2340.3	35.83%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	0.000e+00	1.0000	1395.0	50.36%	4018.6	61.53%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	0.000e+00	1.0000	1110.0	40.07%	3222.7	49.34%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	0.000e+00	1.0000	842.0	30.40%	2701.4	41.36%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	0.000e+00	1.0000	1075.0	38.81%	3400.0	52.06%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	1579.0	57.00%	4653.5	71.25%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	1439.0	51.95%	4262.3	65.26%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%