Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1254)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 8115)	% of Background Sequences with Motif
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-4	-9.547e+00	0.0658	838.0	66.83%	4999.5	61.61%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-4	-9.534e+00	0.0658	681.0	54.31%	3968.4	48.90%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-3	-8.450e+00	0.0658	658.0	52.47%	3851.5	47.46%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-3	-8.228e+00	0.0658	869.0	69.30%	5244.2	64.62%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-3	-7.898e+00	0.0685	541.0	43.14%	3119.9	38.45%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-3	-7.858e+00	0.0685	293.0	23.37%	1581.3	19.49%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-3	-7.145e+00	0.1039	900.0	71.77%	5485.9	67.60%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-3	-7.082e+00	0.1039	445.0	35.49%	2539.3	31.29%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e-2	-6.543e+00	0.1476	47.0	3.75%	191.0	2.35%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-2	-6.047e+00	0.2180	47.0	3.75%	195.2	2.41%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-6.025e+00	0.2180	157.0	12.52%	813.3	10.02%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-2	-5.766e+00	0.2406	945.0	75.36%	5833.4	71.89%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e-2	-5.598e+00	0.2628	194.0	15.47%	1042.2	12.84%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-2	-5.491e+00	0.2717	99.0	7.89%	488.8	6.02%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-2	-5.444e+00	0.2717	15.0	1.20%	44.3	0.55%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-5.356e+00	0.2718	950.0	75.76%	5881.1	72.47%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e-2	-5.322e+00	0.2718	301.0	24.00%	1700.1	20.95%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-2	-5.295e+00	0.2718	330.0	26.32%	1880.1	23.17%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-5.249e+00	0.2718	33.0	2.63%	131.6	1.62%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e-2	-5.163e+00	0.2718	236.0	18.82%	1307.4	16.11%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e-2	-5.061e+00	0.2784	47.0	3.75%	206.1	2.54%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-2	-5.038e+00	0.2784	104.0	8.29%	525.5	6.48%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-2	-5.018e+00	0.2784	826.0	65.87%	5068.6	62.46%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-2	-4.977e+00	0.2784	18.0	1.44%	60.5	0.75%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-2	-4.954e+00	0.2784	556.0	44.34%	3317.2	40.88%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-4.891e+00	0.2784	236.0	18.82%	1315.5	16.21%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-2	-4.841e+00	0.2784	534.0	42.58%	3181.1	39.20%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-4.836e+00	0.2784	68.0	5.42%	324.7	4.00%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-2	-4.727e+00	0.2816	213.0	16.99%	1180.3	14.54%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-4.666e+00	0.2892	18.0	1.44%	62.5	0.77%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-2	-4.631e+00	0.2898	53.0	4.23%	244.0	3.01%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-2	-4.630e+00	0.2898	55.0	4.39%	255.8	3.15%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-4.593e+00	0.2898	407.0	32.46%	2386.4	29.41%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-4.586e+00	0.2898	358.0	28.55%	2079.2	25.62%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-4.570e+00	0.2898	66.0	5.26%	317.6	3.91%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-4.566e+00	0.2898	216.0	17.22%	1203.9	14.84%
SeqBias: GA-repeat	GAGAGAGAGA	1e-1	-4.550e+00	0.2898	1065.0	84.93%	6690.7	82.45%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-1	-4.492e+00	0.2898	157.0	12.52%	849.5	10.47%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-1	-4.492e+00	0.2898	176.0	14.04%	963.8	11.88%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e-1	-4.444e+00	0.2898	12.0	0.96%	36.0	0.44%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e-1	-4.382e+00	0.2898	82.0	6.54%	411.1	5.07%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-4.378e+00	0.2898	167.0	13.32%	912.9	11.25%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-4.358e+00	0.2898	109.0	8.69%	568.8	7.01%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-4.331e+00	0.2898	774.0	61.72%	4755.2	58.60%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-4.320e+00	0.2898	292.0	23.29%	1678.4	20.68%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-4.292e+00	0.2898	252.0	20.10%	1432.9	17.66%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e-1	-4.264e+00	0.2898	66.0	5.26%	322.8	3.98%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-4.256e+00	0.2898	211.0	16.83%	1182.7	14.57%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-4.254e+00	0.2898	133.0	10.61%	712.2	8.78%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-4.160e+00	0.2898	622.0	49.60%	3775.9	46.53%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e-1	-4.146e+00	0.2898	343.0	27.35%	2002.3	24.67%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-4.126e+00	0.2898	457.0	36.44%	2721.5	33.54%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-1	-4.106e+00	0.2898	1022.0	81.50%	6413.9	79.04%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-4.090e+00	0.2898	467.0	37.24%	2786.5	34.34%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-1	-4.090e+00	0.2898	119.0	9.49%	633.2	7.80%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-4.081e+00	0.2898	395.0	31.50%	2331.9	28.74%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-4.024e+00	0.2898	328.0	26.16%	1913.4	23.58%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-1	-4.014e+00	0.2898	34.0	2.71%	149.8	1.85%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-3.926e+00	0.3082	236.0	18.82%	1346.3	16.59%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-1	-3.925e+00	0.3082	579.0	46.17%	3509.7	43.25%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-1	-3.910e+00	0.3082	334.0	26.63%	1955.1	24.09%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-1	-3.883e+00	0.3082	120.0	9.57%	644.8	7.95%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e-1	-3.876e+00	0.3082	281.0	22.41%	1626.1	20.04%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-3.819e+00	0.3163	82.0	6.54%	422.9	5.21%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-3.787e+00	0.3215	141.0	11.24%	772.5	9.52%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e-1	-3.751e+00	0.3282	395.0	31.50%	2345.9	28.91%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e-1	-3.731e+00	0.3300	16.0	1.28%	59.0	0.73%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e-1	-3.644e+00	0.3546	80.0	6.38%	414.8	5.11%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-3.641e+00	0.3546	217.0	17.30%	1239.4	15.27%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e-1	-3.613e+00	0.3554	15.0	1.20%	55.8	0.69%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-1	-3.588e+00	0.3592	204.0	16.27%	1161.6	14.31%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-1	-3.569e+00	0.3609	43.0	3.43%	204.6	2.52%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e-1	-3.558e+00	0.3609	105.0	8.37%	563.1	6.94%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e-1	-3.551e+00	0.3609	283.0	22.57%	1651.2	20.35%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.519e+00	0.3641	10.0	0.80%	32.3	0.40%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-1	-3.475e+00	0.3756	67.0	5.34%	342.7	4.22%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-3.391e+00	0.4034	183.0	14.59%	1039.7	12.81%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-1	-3.359e+00	0.4110	41.0	3.27%	196.7	2.42%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.348e+00	0.4110	93.0	7.42%	497.1	6.13%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.269e+00	0.4384	220.0	17.54%	1271.7	15.67%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-3.254e+00	0.4395	40.0	3.19%	192.5	2.37%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.246e+00	0.4395	125.0	9.97%	691.1	8.52%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.245e+00	0.4395	2.0	0.16%	2.5	0.03%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-1	-3.223e+00	0.4395	281.0	22.41%	1652.9	20.37%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-3.209e+00	0.4395	21.0	1.67%	89.6	1.10%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e-1	-3.197e+00	0.4395	216.0	17.22%	1249.5	15.40%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-1	-3.186e+00	0.4395	61.0	4.86%	313.3	3.86%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e-1	-3.170e+00	0.4402	23.0	1.83%	100.4	1.24%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-3.125e+00	0.4553	53.0	4.23%	268.2	3.30%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-3.115e+00	0.4553	240.0	19.14%	1401.9	17.28%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e-1	-3.099e+00	0.4571	149.0	11.88%	841.6	10.37%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e-1	-3.063e+00	0.4684	19.0	1.52%	80.3	0.99%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e-1	-3.028e+00	0.4800	134.0	10.69%	752.2	9.27%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-1	-2.968e+00	0.5042	29.0	2.31%	135.4	1.67%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-1	-2.961e+00	0.5042	42.0	3.35%	208.0	2.56%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.945e+00	0.5052	273.0	21.77%	1615.0	19.90%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-2.920e+00	0.5127	723.0	57.66%	4492.0	55.36%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-1	-2.919e+00	0.5127	610.0	48.64%	3760.7	46.34%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-2.893e+00	0.5162	27.0	2.15%	125.0	1.54%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-2.861e+00	0.5275	35.0	2.79%	170.6	2.10%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-1	-2.838e+00	0.5342	39.0	3.11%	193.5	2.38%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-1	-2.809e+00	0.5449	418.0	33.33%	2536.4	31.26%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-1	-2.802e+00	0.5449	654.0	52.15%	4051.1	49.92%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e-1	-2.773e+00	0.5536	52.0	4.15%	269.1	3.32%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-2.765e+00	0.5536	31.0	2.47%	149.8	1.85%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-2.739e+00	0.5624	228.0	18.18%	1342.2	16.54%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-2.736e+00	0.5624	195.0	15.55%	1137.3	14.02%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-1	-2.733e+00	0.5624	97.0	7.74%	537.5	6.62%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-2.721e+00	0.5624	11.0	0.88%	42.3	0.52%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.715e+00	0.5624	60.0	4.78%	317.9	3.92%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-2.695e+00	0.5624	164.0	13.08%	948.0	11.68%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e-1	-2.693e+00	0.5624	478.0	38.12%	2925.5	36.05%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.643e+00	0.5807	50.0	3.99%	261.0	3.22%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e-1	-2.641e+00	0.5807	214.0	17.07%	1259.7	15.52%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-1	-2.633e+00	0.5807	142.0	11.32%	814.8	10.04%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-2.623e+00	0.5807	355.0	28.31%	2146.6	26.45%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.614e+00	0.5807	900.0	71.77%	5668.2	69.85%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-1	-2.609e+00	0.5807	150.0	11.96%	865.0	10.66%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-2.591e+00	0.5809	10.0	0.80%	38.9	0.48%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e-1	-2.580e+00	0.5822	37.0	2.95%	186.1	2.29%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-2.570e+00	0.5832	205.0	16.35%	1206.9	14.87%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-1	-2.567e+00	0.5832	100.0	7.97%	560.3	6.90%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.559e+00	0.5832	163.0	13.00%	946.5	11.66%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-2.556e+00	0.5832	69.0	5.50%	374.5	4.61%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e-1	-2.548e+00	0.5832	22.0	1.75%	102.9	1.27%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.545e+00	0.5832	154.0	12.28%	891.8	10.99%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-2.536e+00	0.5832	216.0	17.22%	1276.9	15.74%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-1	-2.535e+00	0.5832	954.0	76.08%	6029.1	74.30%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-1	-2.527e+00	0.5832	268.0	21.37%	1602.9	19.75%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-1	-2.494e+00	0.5859	208.0	16.59%	1228.4	15.14%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e-1	-2.485e+00	0.5865	40.0	3.19%	205.6	2.53%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-2.473e+00	0.5892	75.0	5.98%	412.1	5.08%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-1	-2.460e+00	0.5922	58.0	4.63%	311.7	3.84%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e-1	-2.459e+00	0.5922	9.0	0.72%	34.9	0.43%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-2.448e+00	0.5922	161.0	12.84%	938.3	11.56%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e-1	-2.441e+00	0.5922	52.0	4.15%	276.9	3.41%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-2.427e+00	0.5944	469.0	37.40%	2883.1	35.53%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e-1	-2.418e+00	0.5952	340.0	27.11%	2062.5	25.42%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-1	-2.398e+00	0.6031	215.0	17.15%	1276.5	15.73%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-2.394e+00	0.6031	299.0	23.84%	1804.8	22.24%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e-1	-2.393e+00	0.6031	286.0	22.81%	1722.1	21.22%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.373e+00	0.6052	305.0	24.32%	1843.1	22.71%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-1	-2.352e+00	0.6138	91.0	7.26%	512.4	6.31%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-2.349e+00	0.6138	218.0	17.38%	1297.3	15.99%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e-1	-2.340e+00	0.6138	174.0	13.88%	1023.5	12.61%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e-1	-2.340e+00	0.6138	85.0	6.78%	476.0	5.87%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-1	-2.335e+00	0.6138	123.0	9.81%	708.7	8.73%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-1	-2.330e+00	0.6138	190.0	15.15%	1123.2	13.84%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-1	-2.328e+00	0.6138	162.0	12.92%	949.4	11.70%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e-1	-2.319e+00	0.6138	119.0	9.49%	684.7	8.44%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-2.310e+00	0.6138	87.0	6.94%	489.6	6.03%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-2.304e+00	0.6138	312.0	24.88%	1892.0	23.31%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-2.292e+00	0.6138	285.0	22.73%	1721.3	21.21%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.281e+00	0.6138	232.0	18.50%	1388.4	17.11%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-2.277e+00	0.6138	420.0	33.49%	2579.2	31.78%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.262e+00	0.6158	329.0	26.24%	2001.8	24.67%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-2.249e+00	0.6198	63.0	5.02%	346.2	4.27%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.228e+00	0.6286	23.0	1.83%	112.8	1.39%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-2.216e+00	0.6320	72.0	5.74%	401.5	4.95%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-2.212e+00	0.6320	248.0	19.78%	1492.9	18.40%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.209e+00	0.6320	230.0	18.34%	1379.4	17.00%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.206e+00	0.6320	24.0	1.91%	118.1	1.45%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.206e+00	0.6320	24.0	1.91%	118.7	1.46%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.199e+00	0.6320	269.0	21.45%	1625.8	20.03%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-2.199e+00	0.6320	206.0	16.43%	1229.9	15.16%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-2.172e+00	0.6330	123.0	9.81%	714.6	8.81%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-2.162e+00	0.6357	23.0	1.83%	113.1	1.39%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-2.156e+00	0.6357	202.0	16.11%	1206.5	14.87%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.134e+00	0.6454	60.0	4.78%	331.4	4.08%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-2.117e+00	0.6533	179.0	14.27%	1064.3	13.12%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.111e+00	0.6533	17.0	1.36%	80.4	0.99%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-2.105e+00	0.6534	48.0	3.83%	260.9	3.22%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.095e+00	0.6561	517.0	41.23%	3213.0	39.59%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.074e+00	0.6661	553.0	44.10%	3445.2	42.45%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-2.068e+00	0.6664	105.0	8.37%	607.1	7.48%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-2.067e+00	0.6664	29.0	2.31%	149.2	1.84%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-2.062e+00	0.6664	62.0	4.94%	345.0	4.25%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.055e+00	0.6664	102.0	8.13%	589.7	7.27%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-2.046e+00	0.6664	129.0	10.29%	756.2	9.32%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-2.044e+00	0.6664	148.0	11.80%	874.7	10.78%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-2.023e+00	0.6740	47.0	3.75%	256.7	3.16%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.022e+00	0.6740	59.0	4.70%	328.7	4.05%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-2.019e+00	0.6740	118.0	9.41%	689.6	8.50%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.018e+00	0.6740	203.0	16.19%	1219.3	15.02%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.012e+00	0.6740	29.0	2.31%	150.3	1.85%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.006e+00	0.6740	21.0	1.67%	104.3	1.29%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.996e+00	0.6740	65.0	5.18%	365.8	4.51%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.987e+00	0.6740	43.0	3.43%	233.4	2.88%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-1.981e+00	0.6740	287.0	22.89%	1751.8	21.59%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.981e+00	0.6740	281.0	22.41%	1713.4	21.11%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-1.967e+00	0.6752	128.0	10.21%	753.0	9.28%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-1.962e+00	0.6752	93.0	7.42%	537.9	6.63%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.944e+00	0.6837	142.0	11.32%	841.2	10.37%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-1.932e+00	0.6886	251.0	20.02%	1526.1	18.81%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-1.913e+00	0.6979	169.0	13.48%	1011.4	12.46%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-1.909e+00	0.6979	56.0	4.47%	313.8	3.87%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.906e+00	0.6979	54.0	4.31%	301.6	3.72%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-1.899e+00	0.6979	67.0	5.34%	380.6	4.69%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.899e+00	0.6979	30.0	2.39%	158.6	1.95%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.898e+00	0.6979	327.0	26.08%	2010.8	24.78%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.896e+00	0.6979	158.0	12.60%	943.2	11.62%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-1.895e+00	0.6979	128.0	10.21%	756.6	9.32%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-1.893e+00	0.6979	241.0	19.22%	1465.9	18.07%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.875e+00	0.6979	244.0	19.46%	1485.3	18.30%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.867e+00	0.6979	18.0	1.44%	89.4	1.10%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.861e+00	0.6979	43.0	3.43%	236.3	2.91%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.850e+00	0.7004	165.0	13.16%	989.3	12.19%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.841e+00	0.7030	24.0	1.91%	124.7	1.54%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.840e+00	0.7030	222.0	17.70%	1348.9	16.62%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.833e+00	0.7030	258.0	20.57%	1576.8	19.43%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.830e+00	0.7030	603.0	48.09%	3785.5	46.65%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-1.829e+00	0.7030	207.0	16.51%	1254.6	15.46%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-1.827e+00	0.7030	8.0	0.64%	34.9	0.43%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.826e+00	0.7030	141.0	11.24%	840.2	10.35%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-1.818e+00	0.7030	163.0	13.00%	978.5	12.06%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.814e+00	0.7030	78.0	6.22%	450.5	5.55%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-1.806e+00	0.7030	3.0	0.24%	9.9	0.12%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.790e+00	0.7064	213.0	16.99%	1294.1	15.95%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-1.785e+00	0.7064	96.0	7.66%	562.6	6.93%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-1.776e+00	0.7094	184.0	14.67%	1112.7	13.71%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.759e+00	0.7181	540.0	43.06%	3384.3	41.71%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-1.753e+00	0.7197	396.0	31.58%	2460.1	30.32%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-1.750e+00	0.7197	328.0	26.16%	2027.0	24.98%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-1.744e+00	0.7197	185.0	14.75%	1120.3	13.81%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.740e+00	0.7197	58.0	4.63%	330.3	4.07%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.734e+00	0.7206	155.0	12.36%	932.3	11.49%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.716e+00	0.7302	180.0	14.35%	1090.8	13.44%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.714e+00	0.7302	209.0	16.67%	1273.7	15.70%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-1.707e+00	0.7304	2.0	0.16%	5.0	0.06%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-1.703e+00	0.7304	100.0	7.97%	590.6	7.28%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-1.699e+00	0.7304	225.0	17.94%	1375.5	16.95%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.698e+00	0.7304	269.0	21.45%	1655.0	20.39%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.690e+00	0.7304	62.0	4.94%	356.1	4.39%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.688e+00	0.7304	238.0	18.98%	1458.6	17.97%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.674e+00	0.7353	121.0	9.65%	722.6	8.90%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.664e+00	0.7400	131.0	10.45%	785.2	9.68%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.657e+00	0.7419	38.0	3.03%	211.9	2.61%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.650e+00	0.7437	385.0	30.70%	2397.5	29.54%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.646e+00	0.7437	282.0	22.49%	1740.3	21.45%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.644e+00	0.7437	21.0	1.67%	110.4	1.36%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.644e+00	0.7437	236.0	18.82%	1448.8	17.85%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-1.636e+00	0.7437	141.0	11.24%	850.0	10.47%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.625e+00	0.7471	42.0	3.35%	236.1	2.91%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.623e+00	0.7471	375.0	29.90%	2335.8	28.78%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.620e+00	0.7471	280.0	22.33%	1729.5	21.31%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-1.615e+00	0.7471	36.0	2.87%	201.0	2.48%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.612e+00	0.7471	101.0	8.05%	601.0	7.41%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.599e+00	0.7482	103.0	8.21%	613.7	7.56%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-1.599e+00	0.7482	103.0	8.21%	613.3	7.56%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.593e+00	0.7498	137.0	10.93%	826.6	10.19%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-1.592e+00	0.7498	144.0	11.48%	870.4	10.73%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.589e+00	0.7498	312.0	24.88%	1935.3	23.85%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-1.584e+00	0.7498	163.0	13.00%	990.3	12.20%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.576e+00	0.7498	37.0	2.95%	207.7	2.56%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-1.576e+00	0.7498	37.0	2.95%	207.6	2.56%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-1.574e+00	0.7498	94.0	7.50%	558.1	6.88%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.568e+00	0.7498	93.0	7.42%	553.0	6.81%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.568e+00	0.7498	170.0	13.56%	1035.2	12.76%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-1.563e+00	0.7498	302.0	24.08%	1873.4	23.09%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-1.563e+00	0.7498	17.0	1.36%	88.1	1.09%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-1.543e+00	0.7549	117.0	9.33%	703.2	8.67%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-1.543e+00	0.7549	419.0	33.41%	2623.1	32.32%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.540e+00	0.7549	56.0	4.47%	324.1	3.99%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-1.539e+00	0.7549	120.0	9.57%	722.9	8.91%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.523e+00	0.7588	44.0	3.51%	251.0	3.09%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-1.523e+00	0.7588	15.0	1.20%	77.0	0.95%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-1.522e+00	0.7588	52.0	4.15%	300.4	3.70%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.519e+00	0.7588	242.0	19.30%	1494.2	18.41%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-1.517e+00	0.7588	340.0	27.11%	2119.4	26.12%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-1.511e+00	0.7588	260.0	20.73%	1610.0	19.84%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-1.504e+00	0.7588	426.0	33.97%	2671.1	32.92%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-1.491e+00	0.7634	52.0	4.15%	301.6	3.72%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-1.489e+00	0.7634	9.0	0.72%	43.3	0.53%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-1.489e+00	0.7634	9.0	0.72%	43.1	0.53%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-1.488e+00	0.7634	20.0	1.59%	107.4	1.32%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.469e+00	0.7692	210.0	16.75%	1294.8	15.96%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-1.456e+00	0.7764	35.0	2.79%	198.5	2.45%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-1.453e+00	0.7764	16.0	1.28%	84.7	1.04%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-1.444e+00	0.7802	11.0	0.88%	55.4	0.68%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-1.440e+00	0.7803	834.0	66.51%	5315.8	65.51%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-1.438e+00	0.7803	28.0	2.23%	156.6	1.93%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-1.437e+00	0.7803	682.0	54.39%	4328.9	53.35%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-1.436e+00	0.7803	113.0	9.01%	683.4	8.42%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.436e+00	0.7803	27.0	2.15%	150.4	1.85%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.434e+00	0.7803	8.0	0.64%	38.5	0.47%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-1.429e+00	0.7803	979.0	78.07%	6264.0	77.19%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.413e+00	0.7817	406.0	32.38%	2550.4	31.43%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.411e+00	0.7817	307.0	24.48%	1916.4	23.62%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.410e+00	0.7817	179.0	14.27%	1101.9	13.58%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.407e+00	0.7817	148.0	11.80%	905.1	11.15%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.402e+00	0.7817	226.0	18.02%	1400.4	17.26%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-1.399e+00	0.7817	67.0	5.34%	398.0	4.90%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.387e+00	0.7861	19.0	1.52%	103.7	1.28%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-1.386e+00	0.7861	125.0	9.97%	761.9	9.39%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-1.379e+00	0.7869	96.0	7.66%	579.3	7.14%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-1.366e+00	0.7947	399.0	31.82%	2509.1	30.92%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-1.350e+00	0.8046	177.0	14.11%	1092.1	13.46%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-1.349e+00	0.8046	8.0	0.64%	39.9	0.49%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-1.347e+00	0.8046	48.0	3.83%	281.3	3.47%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-1.346e+00	0.8046	221.0	17.62%	1372.0	16.91%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.337e+00	0.8046	19.0	1.52%	104.7	1.29%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-1.329e+00	0.8085	50.0	3.99%	294.9	3.63%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-1.327e+00	0.8085	76.0	6.06%	457.0	5.63%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-1.326e+00	0.8085	158.0	12.60%	973.1	11.99%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-1.326e+00	0.8085	59.0	4.70%	350.3	4.32%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-1.325e+00	0.8085	323.0	25.76%	2025.6	24.96%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.321e+00	0.8085	574.0	45.77%	3640.4	44.86%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-1.320e+00	0.8085	107.0	8.53%	652.0	8.03%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-1.314e+00	0.8085	273.0	21.77%	1706.2	21.03%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-1.314e+00	0.8085	147.0	11.72%	904.1	11.14%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.310e+00	0.8085	4.0	0.32%	17.9	0.22%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.291e+00	0.8123	149.0	11.88%	918.2	11.31%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-1.291e+00	0.8123	70.0	5.58%	420.4	5.18%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.287e+00	0.8123	191.0	15.23%	1185.1	14.60%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.284e+00	0.8123	65.0	5.18%	389.3	4.80%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.281e+00	0.8123	29.0	2.31%	166.6	2.05%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.279e+00	0.8123	110.0	8.77%	672.6	8.29%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.277e+00	0.8123	1245.0	99.28%	8039.8	99.07%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-1.277e+00	0.8123	494.0	39.39%	3128.6	38.55%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-1.270e+00	0.8123	102.0	8.13%	622.9	7.68%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.259e+00	0.8155	38.0	3.03%	222.9	2.75%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.257e+00	0.8155	143.0	11.40%	882.8	10.88%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-1.245e+00	0.8223	129.0	10.29%	794.1	9.79%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.243e+00	0.8223	191.0	15.23%	1188.6	14.65%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.233e+00	0.8264	14.0	1.12%	76.3	0.94%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.230e+00	0.8264	164.0	13.08%	1017.6	12.54%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.225e+00	0.8284	6.0	0.48%	29.7	0.37%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-1.220e+00	0.8302	148.0	11.80%	916.9	11.30%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.210e+00	0.8354	132.0	10.53%	815.6	10.05%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-1.203e+00	0.8386	342.0	27.27%	2157.3	26.58%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.203e+00	0.8386	291.0	23.21%	1830.1	22.55%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.198e+00	0.8386	217.0	17.30%	1357.6	16.73%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.195e+00	0.8386	51.0	4.07%	305.0	3.76%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-1.189e+00	0.8405	26.0	2.07%	150.7	1.86%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-1.186e+00	0.8405	82.0	6.54%	500.3	6.17%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.177e+00	0.8457	67.0	5.34%	406.6	5.01%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-1.173e+00	0.8466	653.0	52.07%	4165.7	51.33%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-1.170e+00	0.8469	323.0	25.76%	2038.7	25.12%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.156e+00	0.8560	74.0	5.90%	451.6	5.56%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-1.156e+00	0.8560	20.0	1.59%	114.6	1.41%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.151e+00	0.8560	56.0	4.47%	338.2	4.17%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-1.144e+00	0.8587	222.0	17.70%	1393.6	17.17%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.142e+00	0.8587	355.0	28.31%	2246.8	27.69%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.139e+00	0.8587	246.0	19.62%	1548.0	19.08%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.136e+00	0.8587	71.0	5.66%	433.5	5.34%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-1.131e+00	0.8599	83.0	6.62%	509.4	6.28%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-1.130e+00	0.8599	104.0	8.29%	642.8	7.92%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-1.127e+00	0.8599	7.0	0.56%	36.1	0.44%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.121e+00	0.8607	3.0	0.24%	13.5	0.17%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-1.120e+00	0.8607	75.0	5.98%	459.2	5.66%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.117e+00	0.8607	133.0	10.61%	827.7	10.20%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-1.116e+00	0.8607	31.0	2.47%	183.5	2.26%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.116e+00	0.8607	229.0	18.26%	1440.5	17.75%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-1.115e+00	0.8607	26.0	2.07%	152.2	1.88%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.108e+00	0.8607	19.0	1.52%	109.1	1.34%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-1.106e+00	0.8607	120.0	9.57%	745.9	9.19%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-1.106e+00	0.8607	34.0	2.71%	202.0	2.49%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-1.105e+00	0.8607	217.0	17.30%	1364.6	16.82%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-1.102e+00	0.8607	29.0	2.31%	171.7	2.12%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-1.094e+00	0.8607	169.0	13.48%	1058.5	13.04%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-1.089e+00	0.8607	16.0	1.28%	91.4	1.13%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.086e+00	0.8607	183.0	14.59%	1148.8	14.16%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.086e+00	0.8607	170.0	13.56%	1065.3	13.13%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-1.083e+00	0.8607	4.0	0.32%	19.8	0.24%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.083e+00	0.8607	307.0	24.48%	1943.6	23.95%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.075e+00	0.8607	112.0	8.93%	696.5	8.58%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-1.070e+00	0.8613	180.0	14.35%	1130.6	13.93%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.070e+00	0.8613	190.0	15.15%	1194.1	14.72%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-1.067e+00	0.8613	33.0	2.63%	197.9	2.44%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.064e+00	0.8613	166.0	13.24%	1041.6	12.84%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	-1.058e+00	0.8625	882.0	70.33%	5662.5	69.78%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-1.057e+00	0.8625	23.0	1.83%	135.7	1.67%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.053e+00	0.8627	35.0	2.79%	210.7	2.60%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-1.052e+00	0.8627	31.0	2.47%	185.6	2.29%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.049e+00	0.8627	105.0	8.37%	653.1	8.05%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-1.048e+00	0.8627	2.0	0.16%	8.3	0.10%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-1.045e+00	0.8627	405.0	32.30%	2577.8	31.77%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-1.044e+00	0.8627	16.0	1.28%	92.9	1.14%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-1.044e+00	0.8627	30.0	2.39%	179.4	2.21%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-1.042e+00	0.8627	51.0	4.07%	311.5	3.84%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-1.037e+00	0.8627	92.0	7.34%	571.2	7.04%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-1.028e+00	0.8636	28.0	2.23%	167.1	2.06%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.027e+00	0.8636	316.0	25.20%	2006.1	24.72%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-1.024e+00	0.8636	42.0	3.35%	255.1	3.14%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.024e+00	0.8636	58.0	4.63%	356.4	4.39%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-1.023e+00	0.8636	352.0	28.07%	2238.9	27.59%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.021e+00	0.8636	45.0	3.59%	274.2	3.38%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-1.020e+00	0.8636	210.0	16.75%	1326.1	16.34%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-1.012e+00	0.8636	131.0	10.45%	821.8	10.13%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-1.012e+00	0.8636	174.0	13.88%	1096.3	13.51%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.009e+00	0.8636	65.0	5.18%	401.4	4.95%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-9.983e-01	0.8668	105.0	8.37%	656.5	8.09%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-9.956e-01	0.8669	151.0	12.04%	950.2	11.71%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-9.953e-01	0.8669	456.0	36.36%	2911.7	35.88%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-9.941e-01	0.8669	24.0	1.91%	143.4	1.77%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-9.914e-01	0.8669	1.0	0.08%	3.8	0.05%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-9.914e-01	0.8669	1.0	0.08%	3.6	0.04%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-9.914e-01	0.8669	1.0	0.08%	3.8	0.05%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-9.912e-01	0.8669	354.0	28.23%	2254.5	27.78%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-9.857e-01	0.8669	4.0	0.32%	20.6	0.25%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-9.856e-01	0.8669	7.0	0.56%	38.9	0.48%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-9.817e-01	0.8669	89.0	7.10%	556.0	6.85%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-9.759e-01	0.8669	230.0	18.34%	1458.3	17.97%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-9.694e-01	0.8669	25.0	1.99%	150.2	1.85%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-9.682e-01	0.8669	17.0	1.36%	100.7	1.24%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-9.658e-01	0.8669	123.0	9.81%	773.3	9.53%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-9.635e-01	0.8669	182.0	14.51%	1151.4	14.19%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-9.628e-01	0.8669	352.0	28.07%	2244.6	27.66%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-9.603e-01	0.8669	24.0	1.91%	144.3	1.78%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.588e-01	0.8669	16.0	1.28%	94.2	1.16%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.588e-01	0.8669	16.0	1.28%	94.2	1.16%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-9.578e-01	0.8669	114.0	9.09%	716.0	8.82%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-9.536e-01	0.8669	74.0	5.90%	461.5	5.69%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-9.513e-01	0.8669	118.0	9.41%	742.5	9.15%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.479e-01	0.8669	48.0	3.83%	296.9	3.66%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-9.447e-01	0.8669	284.0	22.65%	1808.0	22.28%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-9.430e-01	0.8669	91.0	7.26%	570.3	7.03%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-9.392e-01	0.8669	9.0	0.72%	51.7	0.64%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-9.344e-01	0.8669	140.0	11.16%	884.3	10.90%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-9.275e-01	0.8683	227.0	18.10%	1443.2	17.78%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-9.254e-01	0.8683	153.0	12.20%	968.8	11.94%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-9.210e-01	0.8698	7.0	0.56%	39.5	0.49%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-9.210e-01	0.8698	72.0	5.74%	450.8	5.56%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-9.166e-01	0.8698	520.0	41.47%	3333.1	41.07%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-9.084e-01	0.8747	253.0	20.18%	1612.1	19.87%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-9.077e-01	0.8747	15.0	1.20%	89.3	1.10%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-9.054e-01	0.8747	75.0	5.98%	470.9	5.80%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-9.031e-01	0.8747	90.0	7.18%	567.0	6.99%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-9.012e-01	0.8747	18.0	1.44%	108.1	1.33%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-9.011e-01	0.8747	503.0	40.11%	3225.3	39.75%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-8.970e-01	0.8747	10.0	0.80%	58.1	0.72%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-8.969e-01	0.8747	66.0	5.26%	413.5	5.10%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-8.944e-01	0.8747	3.0	0.24%	15.1	0.19%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-8.944e-01	0.8747	3.0	0.24%	16.0	0.20%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-8.914e-01	0.8747	161.0	12.84%	1022.6	12.60%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-8.913e-01	0.8747	315.0	25.12%	2013.0	24.81%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-8.854e-01	0.8747	13.0	1.04%	77.0	0.95%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-8.837e-01	0.8747	176.0	14.04%	1119.7	13.80%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-8.812e-01	0.8747	69.0	5.50%	433.2	5.34%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-8.786e-01	0.8747	182.0	14.51%	1158.9	14.28%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-8.749e-01	0.8747	22.0	1.75%	134.5	1.66%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-8.735e-01	0.8747	12.0	0.96%	71.8	0.89%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-8.732e-01	0.8747	8.0	0.64%	46.1	0.57%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-8.724e-01	0.8747	220.0	17.54%	1403.2	17.29%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-8.707e-01	0.8747	65.0	5.18%	408.5	5.03%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-8.636e-01	0.8747	84.0	6.70%	530.6	6.54%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-8.605e-01	0.8747	86.0	6.86%	543.1	6.69%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-8.579e-01	0.8747	40.0	3.19%	249.7	3.08%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-8.523e-01	0.8757	60.0	4.78%	377.7	4.65%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-8.409e-01	0.8837	61.0	4.86%	384.1	4.73%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-8.400e-01	0.8837	38.0	3.03%	237.1	2.92%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-8.379e-01	0.8837	130.0	10.37%	827.0	10.19%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-8.331e-01	0.8848	150.0	11.96%	956.3	11.78%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-8.319e-01	0.8848	21.0	1.67%	129.2	1.59%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-8.319e-01	0.8848	614.0	48.96%	3951.4	48.69%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-8.316e-01	0.8848	200.0	15.95%	1278.7	15.76%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-8.286e-01	0.8848	133.0	10.61%	847.7	10.45%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-8.269e-01	0.8848	135.0	10.77%	860.3	10.60%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-8.233e-01	0.8848	23.0	1.83%	142.2	1.75%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-8.215e-01	0.8848	347.0	27.67%	2227.6	27.45%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-8.215e-01	0.8848	73.0	5.82%	462.5	5.70%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-8.179e-01	0.8848	58.0	4.63%	366.5	4.52%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-8.170e-01	0.8848	4.0	0.32%	22.6	0.28%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-8.131e-01	0.8848	121.0	9.65%	771.7	9.51%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-8.106e-01	0.8848	227.0	18.10%	1455.0	17.93%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-8.104e-01	0.8848	425.0	33.89%	2732.7	33.68%
Tal1	CATCTG	1e0	-8.079e-01	0.8848	262.0	20.89%	1680.7	20.71%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-8.073e-01	0.8848	37.0	2.95%	232.2	2.86%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-8.042e-01	0.8848	165.0	13.16%	1055.9	13.01%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-8.035e-01	0.8848	149.0	11.88%	952.7	11.74%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-8.027e-01	0.8848	263.0	20.97%	1687.3	20.79%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-8.025e-01	0.8848	142.0	11.32%	907.1	11.18%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-8.016e-01	0.8848	10.0	0.80%	60.7	0.75%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.985e-01	0.8848	231.0	18.42%	1481.5	18.26%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-7.898e-01	0.8848	260.0	20.73%	1669.9	20.58%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-7.895e-01	0.8848	40.0	3.19%	252.7	3.11%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-7.886e-01	0.8848	231.0	18.42%	1482.9	18.27%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-7.879e-01	0.8848	173.0	13.80%	1108.5	13.66%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-7.858e-01	0.8848	114.0	9.09%	728.1	8.97%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-7.821e-01	0.8848	22.0	1.75%	137.7	1.70%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-7.795e-01	0.8848	81.0	6.46%	516.0	6.36%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-7.764e-01	0.8848	19.0	1.52%	118.9	1.46%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-7.740e-01	0.8848	1.0	0.08%	4.1	0.05%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-7.734e-01	0.8848	11.0	0.88%	67.6	0.83%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-7.734e-01	0.8848	11.0	0.88%	67.2	0.83%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-7.730e-01	0.8848	389.0	31.02%	2504.7	30.87%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-7.703e-01	0.8848	52.0	4.15%	330.2	4.07%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-7.689e-01	0.8848	543.0	43.30%	3500.8	43.14%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-7.665e-01	0.8848	5.0	0.40%	29.3	0.36%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-7.663e-01	0.8848	215.0	17.15%	1381.7	17.03%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-7.583e-01	0.8848	467.0	37.24%	3010.4	37.10%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-7.566e-01	0.8848	15.0	1.20%	93.1	1.15%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-7.563e-01	0.8848	64.0	5.10%	408.1	5.03%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-7.504e-01	0.8848	139.0	11.08%	892.7	11.00%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-7.462e-01	0.8848	304.0	24.24%	1958.9	24.14%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-7.448e-01	0.8848	26.0	2.07%	164.6	2.03%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-7.448e-01	0.8848	26.0	2.07%	164.5	2.03%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-7.439e-01	0.8848	4.0	0.32%	23.4	0.29%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.408e-01	0.8848	113.0	9.01%	725.4	8.94%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.399e-01	0.8848	9.0	0.72%	55.4	0.68%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-7.351e-01	0.8848	123.0	9.81%	790.2	9.74%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-7.351e-01	0.8848	529.0	42.19%	3414.9	42.08%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-7.350e-01	0.8848	112.0	8.93%	719.3	8.86%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-7.265e-01	0.8848	49.0	3.91%	313.9	3.87%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-7.223e-01	0.8866	15.0	1.20%	94.2	1.16%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-7.144e-01	0.8919	41.0	3.27%	262.4	3.23%
SeqBias: CA-repeat	CACACACACA	1e0	-7.004e-01	0.9027	943.0	75.20%	6097.0	75.13%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-6.986e-01	0.9027	35.0	2.79%	224.9	2.77%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-6.971e-01	0.9027	67.0	5.34%	431.2	5.31%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-6.971e-01	0.9027	67.0	5.34%	431.9	5.32%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.949e-01	0.9027	150.0	11.96%	968.7	11.94%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-6.862e-01	0.9067	19.0	1.52%	121.1	1.49%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-6.838e-01	0.9071	237.0	18.90%	1532.4	18.88%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-6.789e-01	0.9097	168.0	13.40%	1086.6	13.39%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-6.773e-01	0.9097	4.0	0.32%	24.3	0.30%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-6.773e-01	0.9097	4.0	0.32%	24.1	0.30%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-6.772e-01	0.9097	58.0	4.63%	374.2	4.61%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-6.746e-01	0.9097	292.0	23.29%	1889.3	23.28%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-6.717e-01	0.9097	74.0	5.90%	478.4	5.90%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-6.717e-01	0.9097	20.0	1.59%	128.6	1.58%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-6.694e-01	0.9097	57.0	4.55%	368.3	4.54%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-6.637e-01	0.9097	77.0	6.14%	498.9	6.15%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.569e-01	0.9140	661.0	52.71%	4279.1	52.73%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-6.568e-01	0.9140	35.0	2.79%	226.4	2.79%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-6.565e-01	0.9140	37.0	2.95%	239.6	2.95%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-6.552e-01	0.9140	249.0	19.86%	1613.2	19.88%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-6.516e-01	0.9140	246.0	19.62%	1595.0	19.65%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.508e-01	0.9140	229.0	18.26%	1484.2	18.29%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-6.466e-01	0.9140	38.0	3.03%	246.6	3.04%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.440e-01	0.9140	18.0	1.44%	116.6	1.44%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-6.440e-01	0.9140	18.0	1.44%	116.5	1.44%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-6.435e-01	0.9140	72.0	5.74%	467.1	5.76%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-6.405e-01	0.9140	162.0	12.92%	1051.3	12.96%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-6.368e-01	0.9140	67.0	5.34%	435.4	5.37%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-6.354e-01	0.9140	83.0	6.62%	539.3	6.65%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-6.323e-01	0.9140	21.0	1.67%	136.4	1.68%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-6.283e-01	0.9160	92.0	7.34%	598.1	7.37%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-6.192e-01	0.9226	1.0	0.08%	5.3	0.06%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-6.178e-01	0.9226	434.0	34.61%	2816.5	34.71%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-6.140e-01	0.9240	16.0	1.28%	104.9	1.29%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-6.112e-01	0.9249	166.0	13.24%	1080.6	13.32%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-6.096e-01	0.9249	113.0	9.01%	736.3	9.07%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.090e-01	0.9249	7.0	0.56%	45.5	0.56%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-6.090e-01	0.9249	7.0	0.56%	45.4	0.56%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-6.010e-01	0.9276	10.0	0.80%	65.1	0.80%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-6.002e-01	0.9276	62.0	4.94%	405.3	4.99%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-5.981e-01	0.9276	54.0	4.31%	353.1	4.35%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.976e-01	0.9276	288.0	22.97%	1873.8	23.09%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-5.969e-01	0.9276	171.0	13.64%	1114.5	13.73%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-5.960e-01	0.9276	234.0	18.66%	1523.2	18.77%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-5.959e-01	0.9276	302.0	24.08%	1964.9	24.21%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-5.943e-01	0.9276	207.0	16.51%	1348.7	16.62%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-5.935e-01	0.9276	136.0	10.85%	887.5	10.94%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-5.932e-01	0.9276	8.0	0.64%	52.3	0.65%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-5.932e-01	0.9276	29.0	2.31%	191.0	2.35%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-5.917e-01	0.9276	2.0	0.16%	12.1	0.15%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-5.915e-01	0.9276	186.0	14.83%	1212.7	14.94%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-5.903e-01	0.9276	742.0	59.17%	4813.6	59.32%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.888e-01	0.9276	25.0	1.99%	164.5	2.03%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-5.866e-01	0.9276	287.0	22.89%	1868.8	23.03%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-5.784e-01	0.9276	131.0	10.45%	856.9	10.56%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.721e-01	0.9276	432.0	34.45%	2810.2	34.63%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-5.702e-01	0.9276	27.0	2.15%	178.7	2.20%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.666e-01	0.9276	10.0	0.80%	67.0	0.83%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-5.657e-01	0.9276	196.0	15.63%	1280.1	15.77%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-5.612e-01	0.9294	217.0	17.30%	1417.0	17.46%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-5.583e-01	0.9304	26.0	2.07%	172.4	2.13%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-5.574e-01	0.9304	206.0	16.43%	1346.4	16.59%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-5.573e-01	0.9304	182.0	14.51%	1190.9	14.68%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-5.463e-01	0.9367	115.0	9.17%	755.2	9.31%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-5.454e-01	0.9367	53.0	4.23%	350.6	4.32%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-5.450e-01	0.9367	136.0	10.85%	892.3	11.00%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-5.425e-01	0.9367	153.0	12.20%	1003.3	12.36%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-5.380e-01	0.9380	225.0	17.94%	1472.1	18.14%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-5.371e-01	0.9380	21.0	1.67%	140.9	1.74%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-5.340e-01	0.9384	10.0	0.80%	68.0	0.84%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-5.337e-01	0.9384	16.0	1.28%	107.8	1.33%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.337e-01	0.9384	24.0	1.91%	160.7	1.98%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-5.257e-01	0.9414	14.0	1.12%	94.5	1.17%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-5.249e-01	0.9414	17.0	1.36%	114.8	1.41%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-5.192e-01	0.9443	31.0	2.47%	207.1	2.55%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-5.167e-01	0.9450	18.0	1.44%	121.5	1.50%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-5.160e-01	0.9450	130.0	10.37%	856.2	10.55%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-5.156e-01	0.9450	3.0	0.24%	20.0	0.25%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-5.154e-01	0.9450	39.0	3.11%	260.6	3.21%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-5.133e-01	0.9450	24.0	1.91%	161.3	1.99%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-5.117e-01	0.9450	42.0	3.35%	280.4	3.46%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-5.077e-01	0.9450	82.0	6.54%	543.3	6.70%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.075e-01	0.9450	13.0	1.04%	88.8	1.09%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-5.046e-01	0.9450	48.0	3.83%	320.7	3.95%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-5.040e-01	0.9450	76.0	6.06%	504.4	6.22%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-5.033e-01	0.9450	1.0	0.08%	6.2	0.08%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-5.027e-01	0.9450	41.0	3.27%	274.4	3.38%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-5.025e-01	0.9450	251.0	20.02%	1646.9	20.30%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.965e-01	0.9450	293.0	23.37%	1920.5	23.67%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-4.882e-01	0.9494	12.0	0.96%	82.4	1.01%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-4.869e-01	0.9494	19.0	1.52%	129.1	1.59%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-4.865e-01	0.9494	36.0	2.87%	242.1	2.98%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-4.804e-01	0.9520	411.0	32.78%	2689.8	33.15%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-4.751e-01	0.9555	98.0	7.81%	651.5	8.03%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.720e-01	0.9569	18.0	1.44%	123.6	1.52%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-4.683e-01	0.9588	516.0	41.15%	3372.7	41.56%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-4.680e-01	0.9588	144.0	11.48%	953.8	11.75%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-4.662e-01	0.9588	50.0	3.99%	336.8	4.15%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-4.619e-01	0.9588	12.0	0.96%	83.6	1.03%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-4.619e-01	0.9588	12.0	0.96%	83.9	1.03%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-4.614e-01	0.9588	126.0	10.05%	836.8	10.31%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-4.607e-01	0.9588	115.0	9.17%	764.0	9.42%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-4.575e-01	0.9588	127.0	10.13%	843.9	10.40%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-4.565e-01	0.9588	17.0	1.36%	117.6	1.45%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-4.543e-01	0.9588	8.0	0.64%	57.0	0.70%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-4.539e-01	0.9588	333.0	26.56%	2187.3	26.95%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-4.532e-01	0.9588	94.0	7.50%	627.6	7.73%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-4.509e-01	0.9588	14.0	1.12%	97.1	1.20%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-4.503e-01	0.9588	25.0	1.99%	171.1	2.11%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-4.470e-01	0.9588	210.0	16.75%	1387.4	17.10%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-4.454e-01	0.9588	19.0	1.52%	131.9	1.63%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-4.442e-01	0.9588	302.0	24.08%	1987.4	24.49%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-4.436e-01	0.9588	230.0	18.34%	1518.8	18.72%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-4.427e-01	0.9588	60.0	4.78%	404.2	4.98%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.352e-01	0.9608	218.0	17.38%	1441.5	17.76%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-4.335e-01	0.9609	87.0	6.94%	583.4	7.19%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-4.323e-01	0.9609	111.0	8.85%	741.4	9.14%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-4.296e-01	0.9615	29.0	2.31%	199.1	2.45%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-4.283e-01	0.9615	71.0	5.66%	478.1	5.89%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-4.271e-01	0.9615	6.0	0.48%	43.2	0.53%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-4.263e-01	0.9615	36.0	2.87%	246.0	3.03%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-4.212e-01	0.9635	20.0	1.59%	139.7	1.72%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-4.202e-01	0.9635	31.0	2.47%	213.6	2.63%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e0	-4.194e-01	0.9635	817.0	65.15%	5327.0	65.65%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-4.183e-01	0.9635	380.0	30.30%	2499.7	30.80%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-4.163e-01	0.9635	11.0	0.88%	78.2	0.96%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-4.162e-01	0.9635	205.0	16.35%	1359.7	16.76%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-4.137e-01	0.9635	1.0	0.08%	7.3	0.09%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-4.121e-01	0.9635	126.0	10.05%	842.5	10.38%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-4.119e-01	0.9635	133.0	10.61%	888.7	10.95%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-4.117e-01	0.9635	228.0	18.18%	1510.8	18.62%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-4.110e-01	0.9635	18.0	1.44%	127.0	1.56%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-4.096e-01	0.9635	13.0	1.04%	92.7	1.14%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.085e-01	0.9635	76.0	6.06%	513.4	6.33%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.053e-01	0.9635	121.0	9.65%	810.0	9.98%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-4.028e-01	0.9635	145.0	11.56%	968.1	11.93%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-4.016e-01	0.9635	98.0	7.81%	659.2	8.12%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-4.015e-01	0.9635	340.0	27.11%	2242.3	27.63%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-3.995e-01	0.9635	81.0	6.46%	547.1	6.74%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-3.965e-01	0.9635	8.0	0.64%	58.6	0.72%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-3.927e-01	0.9635	67.0	5.34%	455.6	5.61%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-3.922e-01	0.9635	18.0	1.44%	127.0	1.57%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-3.914e-01	0.9635	196.0	15.63%	1304.1	16.07%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-3.903e-01	0.9635	12.0	0.96%	86.8	1.07%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-3.889e-01	0.9635	188.0	14.99%	1252.2	15.43%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.879e-01	0.9635	13.0	1.04%	93.5	1.15%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.849e-01	0.9635	49.0	3.91%	336.0	4.14%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-3.847e-01	0.9635	4.0	0.32%	30.9	0.38%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-3.846e-01	0.9635	46.0	3.67%	316.2	3.90%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-3.830e-01	0.9635	264.0	21.05%	1750.9	21.58%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.724e-01	0.9670	70.0	5.58%	478.0	5.89%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-3.717e-01	0.9670	3.0	0.24%	23.4	0.29%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-3.704e-01	0.9670	115.0	9.17%	775.0	9.55%
SeqBias: CG bias	SSSSSSSSSS	1e0	-3.702e-01	0.9670	1035.0	82.54%	6736.3	83.01%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.690e-01	0.9670	82.0	6.54%	558.0	6.88%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.669e-01	0.9670	88.0	7.02%	597.9	7.37%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-3.669e-01	0.9670	88.0	7.02%	597.5	7.36%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-3.654e-01	0.9670	26.0	2.07%	183.9	2.27%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-3.653e-01	0.9670	638.0	50.88%	4183.6	51.55%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-3.634e-01	0.9670	15.0	1.20%	108.9	1.34%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-3.615e-01	0.9670	166.0	13.24%	1112.3	13.71%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-3.613e-01	0.9670	152.0	12.12%	1020.4	12.57%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-3.591e-01	0.9670	320.0	25.52%	2120.4	26.13%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-3.587e-01	0.9670	174.0	13.88%	1165.4	14.36%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-3.560e-01	0.9670	1248.0	99.52%	8079.2	99.56%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-3.551e-01	0.9670	48.0	3.83%	332.3	4.09%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-3.535e-01	0.9670	73.0	5.82%	499.9	6.16%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.535e-01	0.9670	295.0	23.52%	1958.9	24.14%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-3.526e-01	0.9670	289.0	23.05%	1919.0	23.65%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-3.524e-01	0.9670	407.0	32.46%	2688.3	33.13%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-3.522e-01	0.9670	42.0	3.35%	292.6	3.61%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-3.510e-01	0.9670	26.0	2.07%	184.7	2.28%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-3.500e-01	0.9670	127.0	10.13%	857.9	10.57%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-3.433e-01	0.9670	655.0	52.23%	4298.3	52.97%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-3.422e-01	0.9670	7.0	0.56%	53.1	0.65%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-3.416e-01	0.9670	367.0	29.27%	2430.9	29.96%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-3.395e-01	0.9670	89.0	7.10%	607.9	7.49%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-3.391e-01	0.9670	136.0	10.85%	918.0	11.31%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-3.364e-01	0.9670	268.0	21.37%	1785.5	22.00%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-3.340e-01	0.9670	48.0	3.83%	334.7	4.12%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-3.333e-01	0.9670	3.0	0.24%	24.1	0.30%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-3.284e-01	0.9670	13.0	1.04%	96.7	1.19%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.257e-01	0.9670	25.0	1.99%	179.3	2.21%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-3.208e-01	0.9695	288.0	22.97%	1919.9	23.66%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-3.147e-01	0.9741	761.0	60.69%	4989.8	61.49%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.136e-01	0.9741	197.0	15.71%	1324.7	16.32%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-3.136e-01	0.9741	93.0	7.42%	637.4	7.85%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.108e-01	0.9741	70.0	5.58%	484.7	5.97%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.095e-01	0.9741	17.0	1.36%	125.7	1.55%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.079e-01	0.9741	38.0	3.03%	269.2	3.32%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.073e-01	0.9741	123.0	9.81%	837.2	10.32%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-3.065e-01	0.9741	126.0	10.05%	857.0	10.56%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-3.036e-01	0.9741	2.0	0.16%	17.7	0.22%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-2.996e-01	0.9761	177.0	14.11%	1195.5	14.73%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-2.941e-01	0.9801	348.0	27.75%	2317.3	28.56%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-2.916e-01	0.9812	21.0	1.67%	154.3	1.90%
SeqBias: TA-repeat	TATATATATA	1e0	-2.914e-01	0.9812	547.0	43.62%	3612.5	44.52%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.884e-01	0.9815	470.0	37.48%	3113.4	38.37%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.877e-01	0.9815	32.0	2.55%	230.1	2.84%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-2.877e-01	0.9815	89.0	7.10%	614.6	7.57%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-2.795e-01	0.9861	51.0	4.07%	360.4	4.44%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.793e-01	0.9861	42.0	3.35%	299.5	3.69%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-2.790e-01	0.9861	20.0	1.59%	148.6	1.83%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-2.783e-01	0.9861	67.0	5.34%	468.0	5.77%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-2.768e-01	0.9861	78.0	6.22%	542.2	6.68%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-2.755e-01	0.9861	44.0	3.51%	313.8	3.87%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.751e-01	0.9861	25.0	1.99%	183.5	2.26%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-2.692e-01	0.9865	64.0	5.10%	449.4	5.54%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.691e-01	0.9865	124.0	9.89%	850.0	10.47%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-2.678e-01	0.9865	3.0	0.24%	26.3	0.32%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-2.668e-01	0.9865	147.0	11.72%	1003.9	12.37%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.658e-01	0.9865	17.0	1.36%	128.8	1.59%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.652e-01	0.9865	54.0	4.31%	382.7	4.72%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.649e-01	0.9865	23.0	1.83%	170.1	2.10%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.642e-01	0.9865	24.0	1.91%	177.1	2.18%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-2.626e-01	0.9865	26.0	2.07%	191.9	2.36%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.613e-01	0.9865	327.0	26.08%	2188.9	26.97%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-2.601e-01	0.9865	525.0	41.87%	3478.9	42.87%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-2.563e-01	0.9865	11.0	0.88%	86.6	1.07%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-2.537e-01	0.9865	20.0	1.59%	150.5	1.85%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-2.533e-01	0.9865	7.0	0.56%	57.6	0.71%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.519e-01	0.9865	168.0	13.40%	1145.1	14.11%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-2.513e-01	0.9865	530.0	42.26%	3513.5	43.30%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-2.464e-01	0.9872	184.0	14.67%	1252.5	15.44%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.447e-01	0.9875	47.0	3.75%	337.9	4.16%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-2.445e-01	0.9875	34.0	2.71%	248.7	3.07%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-2.437e-01	0.9875	162.0	12.92%	1107.2	13.64%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-2.423e-01	0.9875	629.0	50.16%	4157.1	51.23%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-2.388e-01	0.9879	39.0	3.11%	283.8	3.50%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-2.346e-01	0.9907	7.0	0.56%	58.8	0.72%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.317e-01	0.9923	81.0	6.46%	569.7	7.02%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-2.310e-01	0.9923	22.0	1.75%	166.2	2.05%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.272e-01	0.9940	91.0	7.26%	637.1	7.85%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-2.271e-01	0.9940	399.0	31.82%	2668.3	32.88%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-2.244e-01	0.9942	143.0	11.40%	985.1	12.14%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.233e-01	0.9942	190.0	15.15%	1297.4	15.99%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.231e-01	0.9942	38.0	3.03%	278.4	3.43%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-2.211e-01	0.9942	26.0	2.07%	195.4	2.41%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-2.187e-01	0.9945	342.0	27.27%	2298.1	28.32%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.172e-01	0.9946	7.0	0.56%	59.4	0.73%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.140e-01	0.9965	251.0	20.02%	1702.4	20.98%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-2.125e-01	0.9967	41.0	3.27%	300.6	3.70%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-2.123e-01	0.9967	5.0	0.40%	44.8	0.55%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.118e-01	0.9967	101.0	8.05%	707.5	8.72%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-2.113e-01	0.9967	29.0	2.31%	217.7	2.68%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.071e-01	0.9967	6.0	0.48%	52.2	0.64%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.027e-01	0.9997	16.0	1.28%	126.6	1.56%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-2.024e-01	0.9997	26.0	2.07%	197.1	2.43%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-2.016e-01	0.9997	230.0	18.34%	1567.2	19.31%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.015e-01	0.9997	1.0	0.08%	11.1	0.14%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-2.015e-01	0.9997	1.0	0.08%	11.5	0.14%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.000e-01	0.9997	79.0	6.30%	561.1	6.91%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-2.000e-01	0.9997	432.0	34.45%	2892.5	35.64%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.990e-01	0.9997	88.0	7.02%	622.5	7.67%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.986e-01	0.9997	222.0	17.70%	1516.0	18.68%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-1.981e-01	0.9997	230.0	18.34%	1568.2	19.33%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-1.955e-01	0.9997	69.0	5.50%	494.9	6.10%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.941e-01	0.9997	5.0	0.40%	45.9	0.57%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-1.941e-01	0.9997	5.0	0.40%	45.7	0.56%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-1.939e-01	0.9997	27.0	2.15%	205.7	2.53%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-1.919e-01	0.9997	16.0	1.28%	128.0	1.58%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.916e-01	0.9997	105.0	8.37%	738.9	9.11%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.908e-01	0.9997	102.0	8.13%	718.6	8.86%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-1.863e-01	0.9997	11.0	0.88%	91.8	1.13%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-1.860e-01	0.9997	48.0	3.83%	352.1	4.34%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.852e-01	0.9997	95.0	7.58%	672.7	8.29%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.838e-01	0.9997	17.0	1.36%	135.3	1.67%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.834e-01	0.9997	70.0	5.58%	503.1	6.20%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-1.815e-01	0.9997	16.0	1.28%	128.0	1.58%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-1.798e-01	0.9997	359.0	28.63%	2422.4	29.85%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.792e-01	0.9997	166.0	13.24%	1149.5	14.17%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.763e-01	0.9997	25.0	1.99%	193.4	2.38%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-1.721e-01	0.9997	121.0	9.65%	851.0	10.49%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.719e-01	0.9997	114.0	9.09%	803.5	9.90%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-1.708e-01	0.9997	115.0	9.17%	810.5	9.99%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.700e-01	0.9997	1.0	0.08%	12.2	0.15%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-1.670e-01	0.9997	129.0	10.29%	905.0	11.15%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-1.656e-01	0.9997	60.0	4.78%	438.6	5.41%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.646e-01	0.9997	39.0	3.11%	293.1	3.61%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-1.603e-01	0.9997	4.0	0.32%	39.8	0.49%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-1.586e-01	0.9998	7.0	0.56%	63.7	0.78%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-1.585e-01	0.9998	38.0	3.03%	288.0	3.55%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.583e-01	0.9998	169.0	13.48%	1175.8	14.49%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-1.546e-01	0.9998	1254.0	100.00%	8114.5	100.00%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.546e-01	0.9998	1254.0	100.00%	8114.9	100.00%
 Ik-1	NHTTGGGAATRCC	1e0	-1.546e-01	0.9998	1254.0	100.00%	8114.9	100.00%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.518e-01	0.9998	44.0	3.51%	330.1	4.07%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.517e-01	0.9998	319.0	25.44%	2170.2	26.74%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-1.515e-01	0.9998	33.0	2.63%	253.0	3.12%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-1.513e-01	0.9998	73.0	5.82%	530.4	6.54%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-1.478e-01	0.9998	6.0	0.48%	56.9	0.70%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-1.462e-01	0.9998	25.0	1.99%	198.0	2.44%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-1.459e-01	0.9998	35.0	2.79%	268.3	3.31%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-1.410e-01	1.0000	41.0	3.27%	311.7	3.84%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.405e-01	1.0000	47.0	3.75%	353.6	4.36%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.405e-01	1.0000	47.0	3.75%	353.6	4.36%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.398e-01	1.0000	103.0	8.21%	737.3	9.09%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-1.397e-01	1.0000	34.0	2.71%	263.0	3.24%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.395e-01	1.0000	17.0	1.36%	140.1	1.73%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.379e-01	1.0000	122.0	9.73%	866.2	10.67%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-1.367e-01	1.0000	19.0	1.52%	155.6	1.92%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.357e-01	1.0000	6.0	0.48%	57.5	0.71%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-1.335e-01	1.0000	15.0	1.20%	126.5	1.56%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.318e-01	1.0000	113.0	9.01%	807.2	9.95%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.317e-01	1.0000	341.0	27.19%	2323.1	28.63%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.314e-01	1.0000	141.0	11.24%	996.1	12.28%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-1.309e-01	1.0000	9.0	0.72%	81.3	1.00%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-1.303e-01	1.0000	40.0	3.19%	306.3	3.77%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.283e-01	1.0000	58.0	4.63%	432.4	5.33%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.273e-01	1.0000	32.0	2.55%	250.7	3.09%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.262e-01	1.0000	140.0	11.16%	991.1	12.21%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.258e-01	1.0000	15.0	1.20%	127.4	1.57%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-1.255e-01	1.0000	200.0	15.95%	1394.0	17.18%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-1.245e-01	1.0000	6.0	0.48%	58.3	0.72%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-1.245e-01	1.0000	7.0	0.56%	66.1	0.81%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.230e-01	1.0000	34.0	2.71%	265.1	3.27%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-1.216e-01	1.0000	12.0	0.96%	105.5	1.30%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.206e-01	1.0000	68.0	5.42%	503.8	6.21%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-1.203e-01	1.0000	18.0	1.44%	150.2	1.85%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-1.180e-01	1.0000	563.0	44.90%	3779.7	46.58%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.172e-01	1.0000	314.0	25.04%	2152.0	26.52%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-1.146e-01	1.0000	195.0	15.55%	1364.2	16.81%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.129e-01	1.0000	78.0	6.22%	575.0	7.09%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-1.120e-01	1.0000	57.0	4.55%	429.4	5.29%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-1.099e-01	1.0000	308.0	24.56%	2116.8	26.09%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-1.094e-01	1.0000	338.0	26.95%	2314.1	28.52%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.075e-01	1.0000	90.0	7.18%	658.5	8.12%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.054e-01	1.0000	134.0	10.69%	958.9	11.82%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.040e-01	1.0000	25.0	1.99%	204.3	2.52%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-1.034e-01	1.0000	43.0	3.43%	333.3	4.11%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.020e-01	1.0000	298.0	23.76%	2054.7	25.32%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-1.014e-01	1.0000	90.0	7.18%	661.0	8.15%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.011e-01	1.0000	289.0	23.05%	1995.7	24.59%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-1.003e-01	1.0000	26.0	2.07%	212.0	2.61%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-9.857e-02	1.0000	15.0	1.20%	131.2	1.62%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-9.578e-02	1.0000	23.0	1.83%	191.7	2.36%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-9.412e-02	1.0000	94.0	7.50%	690.4	8.51%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-9.078e-02	1.0000	384.0	30.62%	2627.0	32.37%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-9.059e-02	1.0000	57.0	4.55%	435.4	5.37%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-8.543e-02	1.0000	153.0	12.20%	1095.4	13.50%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-8.529e-02	1.0000	13.0	1.04%	119.0	1.47%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-8.252e-02	1.0000	21.0	1.67%	179.4	2.21%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-7.832e-02	1.0000	3.0	0.24%	37.5	0.46%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-7.738e-02	1.0000	32.0	2.55%	261.3	3.22%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-7.599e-02	1.0000	104.0	8.29%	766.9	9.45%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-7.519e-02	1.0000	55.0	4.39%	426.1	5.25%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-7.041e-02	1.0000	32.0	2.55%	263.2	3.24%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-6.826e-02	1.0000	27.0	2.15%	227.4	2.80%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-6.747e-02	1.0000	57.0	4.55%	443.6	5.47%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-6.733e-02	1.0000	669.0	53.35%	4498.5	55.44%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.670e-02	1.0000	115.0	9.17%	846.4	10.43%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-6.590e-02	1.0000	584.0	46.57%	3950.9	48.69%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-6.369e-02	1.0000	256.0	20.41%	1799.9	22.18%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.367e-02	1.0000	76.0	6.06%	578.1	7.12%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.330e-02	1.0000	127.0	10.13%	930.4	11.46%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-6.256e-02	1.0000	754.0	60.13%	5048.0	62.21%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-6.051e-02	1.0000	118.0	9.41%	870.0	10.72%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-6.026e-02	1.0000	26.0	2.07%	222.9	2.75%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-5.950e-02	1.0000	76.0	6.06%	580.3	7.15%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.823e-02	1.0000	7.0	0.56%	75.3	0.93%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-5.534e-02	1.0000	84.0	6.70%	638.9	7.87%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.436e-02	1.0000	31.0	2.47%	261.1	3.22%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.270e-02	1.0000	10.0	0.80%	101.6	1.25%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-4.968e-02	1.0000	41.0	3.27%	336.8	4.15%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.934e-02	1.0000	3.0	0.24%	41.5	0.51%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-4.746e-02	1.0000	45.0	3.59%	366.1	4.51%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-4.686e-02	1.0000	161.0	12.84%	1173.5	14.46%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.365e-02	1.0000	28.0	2.23%	243.0	3.00%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-4.319e-02	1.0000	242.0	19.30%	1723.8	21.24%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-4.249e-02	1.0000	241.0	19.22%	1717.7	21.17%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-4.230e-02	1.0000	213.0	16.99%	1529.9	18.85%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-4.089e-02	1.0000	7.0	0.56%	79.7	0.98%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-3.974e-02	1.0000	1253.0	99.92%	8112.8	99.97%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-3.931e-02	1.0000	8.0	0.64%	88.9	1.10%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-3.707e-02	1.0000	244.0	19.46%	1743.6	21.49%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-3.699e-02	1.0000	26.0	2.07%	231.4	2.85%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-3.671e-02	1.0000	100.0	7.97%	762.2	9.39%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-3.436e-02	1.0000	194.0	15.47%	1409.3	17.37%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-3.411e-02	1.0000	12.0	0.96%	124.0	1.53%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-3.336e-02	1.0000	53.0	4.23%	432.3	5.33%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-3.015e-02	1.0000	280.0	22.33%	1993.0	24.56%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.886e-02	1.0000	1.0	0.08%	23.9	0.29%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-2.785e-02	1.0000	14.0	1.12%	142.5	1.76%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-2.768e-02	1.0000	66.0	5.26%	530.3	6.54%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-2.693e-02	1.0000	423.0	33.73%	2946.3	36.31%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-2.674e-02	1.0000	49.0	3.91%	408.7	5.04%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-2.600e-02	1.0000	312.0	24.88%	2213.6	27.28%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-2.578e-02	1.0000	269.0	21.45%	1926.8	23.74%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.428e-02	1.0000	3.0	0.24%	47.7	0.59%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.210e-02	1.0000	55.0	4.39%	456.6	5.63%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.810e-02	1.0000	214.0	17.07%	1569.1	19.34%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.690e-02	1.0000	76.0	6.06%	614.7	7.58%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.635e-02	1.0000	11.0	0.88%	124.6	1.54%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.557e-02	1.0000	10.0	0.80%	116.6	1.44%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-1.103e-02	1.0000	52.0	4.15%	449.0	5.53%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.083e-02	1.0000	1253.0	99.92%	8113.9	99.99%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-9.027e-03	1.0000	149.0	11.88%	1146.8	14.13%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-7.482e-03	1.0000	360.0	28.71%	2584.5	31.85%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-6.563e-03	1.0000	302.0	24.08%	2201.7	27.13%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-6.192e-03	1.0000	4.0	0.32%	69.8	0.86%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.493e-03	1.0000	137.0	10.93%	1082.2	13.34%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-4.319e-03	1.0000	36.0	2.87%	345.9	4.26%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-3.607e-03	1.0000	202.0	16.11%	1541.8	19.00%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.018e-03	1.0000	39.0	3.11%	381.3	4.70%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-5.720e-04	1.0000	58.0	4.63%	550.2	6.78%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	17.7	0.22%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	0.000e+00	1.0000	0.0	0.00%	6.7	0.08%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	1.7	0.02%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	0.000e+00	1.0000	0.0	0.00%	9.9	0.12%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	0.000e+00	1.0000	0.0	0.00%	3.7	0.05%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	0.000e+00	1.0000	0.0	0.00%	4.1	0.05%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	0.000e+00	1.0000	0.0	0.00%	6.9	0.09%