Information for 5-NACATAGTAATD (Motif 9)

G C A T T G C A T G A C G C T A C G A T C G T A C T A G G C A T C G T A G C T A G C A T C A G T
Reverse Opposite:
G T C A C G T A C G A T G C A T C G T A G A T C G C A T G C T A C G A T A C T G A C G T C G T A
p-value:1e-10
log p-value:-2.483e+01
Information Content per bp:1.458
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif2.55%
Number of Background Sequences with motif48.9
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets181.6 +/- 88.6bp
Average Position of motif in Background182.2 +/- 77.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ubx/dmmpmm(Down)/fly

Match Rank:1
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:NACATAGTAATD
TAAATAATAATT
 G C A T T G C A T G A C G C T A C G A T C G T A C T A G G C A T C G T A G C T A G C A T C A G T
C G A T C G T A G C T A C G T A G A C T T G C A T C G A G C A T G T C A C G T A C G A T C G A T

sd/dmmpmm(Bigfoot)/fly

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:NACATAGTAATD--
--AAATGAAATTTG
 G C A T T G C A T G A C G C T A C G A T C G T A C T A G G C A T C G T A G C T A G C A T C A G T A C G T A C G T
A C G T A C G T T G C A C G T A C G T A C G A T A T C G C G T A G C T A C T G A A C G T C A G T A G C T A T C G

Tb_0216(RRM)/Trypanosoma_brucei-RNCMPT00216-PBM/HughesRNA

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:NACATAGTAATD
--CATTGTN---
 G C A T T G C A T G A C G C T A C G A T C G T A C T A G G C A T C G T A G C T A G C A T C A G T
A C G T A C G T A G T C C G T A A C G T C G A T A C T G A C G T C G T A A C G T A C G T A C G T

Antp/dmmpmm(Down)/fly

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-NACATAGTAATD
ATAAATAATAAT-
 A C G T G C A T T G C A T G A C G C T A C G A T C G T A C T A G G C A T C G T A G C T A G C A T C A G T
C G T A G C A T G C T A G C T A C G T A G C A T T G C A T G C A G C A T G T C A C G T A C G A T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----NACATAGTAATD
AAACAGACAAAGGAAT-
 A C G T A C G T A C G T A C G T A C G T G C A T T G C A T G A C G C T A C G A T C G T A C T A G G C A T C G T A G C T A G C A T C A G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T

br-Z2/dmmpmm(SeSiMCMC)/fly

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:NACATAGTAATD
----TAGTAA--
 G C A T T G C A T G A C G C T A C G A T C G T A C T A G G C A T C G T A G C T A G C A T C A G T
A C G T A C G T A C G T A C G T C G A T G T C A C T A G G C A T G C T A C G T A A C G T A C G T

br-Z2/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:NACATAGTAATD
-AAATAGAAAA-
 G C A T T G C A T G A C G C T A C G A T C G T A C T A G G C A T C G T A G C T A G C A T C A G T
A C G T C G T A C G T A C G T A A C G T C G T A A C T G C G A T C G A T C G T A C G T A A C G T

sd/dmmpmm(SeSiMCMC)/fly

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:NACATAGTAATD---
--AAATGAAATTCGA
 G C A T T G C A T G A C G C T A C G A T C G T A C T A G G C A T C G T A G C T A G C A T C A G T A C G T A C G T A C G T
A C G T A C G T T G A C C G T A C G T A G A C T A C T G C G T A G T C A C G T A A G C T C A G T A G T C A T C G G C T A

PB0079.1_Sry_1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-NACATAGTAATD---
NANTATTATAATTNNN
 A C G T G C A T T G C A T G A C G C T A C G A T C G T A C T A G G C A T C G T A G C T A G C A T C A G T A C G T A C G T A C G T
A C T G G C T A G C T A G A C T C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T G T C A C G A T T G C A

PB0064.1_Sox14_1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-NACATAGTAATD---
NNTAATTATAATTNNN
 A C G T G C A T T G C A T G A C G C T A C G A T C G T A C T A G G C A T C G T A G C T A G C A T C A G T A C G T A C G T A C G T
C A T G G T C A G C A T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C T A G G T A C