Information for 1-TTTTCACA (Motif 7)

C G A T A G C T A G C T A C G T G T A C C T G A A G T C G C T A
Reverse Opposite:
C G A T A C T G A G C T C A T G G T C A C T G A C T G A G C T A
p-value:1e-11
log p-value:-2.640e+01
Information Content per bp:1.768
Number of Target Sequences with motif218.0
Percentage of Target Sequences with motif17.38%
Number of Background Sequences with motif882.3
Percentage of Background Sequences with motif10.87%
Average Position of motif in Targets166.8 +/- 96.6bp
Average Position of motif in Background160.1 +/- 96.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CG11617/dmmpmm(Noyes_hd)/fly

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:TTTTCACA--
ATTTAACATA
 C G A T A G C T A G C T A C G T G T A C C T G A A G T C G C T A A C G T A C G T
C G A T C G A T C G A T A C G T C G T A C G T A A G T C C G T A A C G T A C G T

Tb_0251(RRM)/Trypanosoma_brucei-RNCMPT00251-PBM/HughesRNA

Match Rank:2
Score:0.83
Offset:1
Orientation:forward strand
Alignment:TTTTCACA
-ATTCACA
 C G A T A G C T A G C T A C G T G T A C C T G A A G T C G C T A
A C G T G C T A C G A T A C G T A G T C C G T A A G T C C T G A

INO4/INO4_YPD/4-INO4,37-INO2(Harbison)/Yeast

Match Rank:3
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:TTTTCACA--
TTTTCACATG
 C G A T A G C T A G C T A C G T G T A C C T G A A G T C G C T A A C G T A C G T
G C A T G A C T C G A T A G C T T A G C C G T A A T G C T C G A C G A T C A T G

PB0013.1_Eomes_1/Jaspar

Match Rank:4
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--TTTTCACA-------
NNTTTTCACACCTTNNN
 A C G T A C G T C G A T A G C T A G C T A C G T G T A C C T G A A G T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

TBR1/MA0802.1/Jaspar

Match Rank:5
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:TTTTCACA---
-TTTCACACCT
 C G A T A G C T A G C T A C G T G T A C C T G A A G T C G C T A A C G T A C G T A C G T
A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

EOMES/MA0800.1/Jaspar

Match Rank:6
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-TTTTCACA----
NTTTTCACACCTT
 A C G T C G A T A G C T A G C T A C G T G T A C C T G A A G T C G C T A A C G T A C G T A C G T A C G T
C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T

TBX2/MA0688.1/Jaspar

Match Rank:7
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TTTTCACA----
-TTTCACACCTN
 C G A T A G C T A G C T A C G T G T A C C T G A A G T C G C T A A C G T A C G T A C G T A C G T
A C G T G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T

INO4/MA0322.1/Jaspar

Match Rank:8
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:TTTTCACA---
--TTCACATGC
 C G A T A G C T A G C T A C G T G T A C C T G A A G T C G C T A A C G T A C G T A C G T
A C G T A C G T A G C T A G C T A G T C C G T A A G T C C G T A C G A T C T A G A T G C

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:9
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:TTTTCACA----
--TTMACACCTT
 C G A T A G C T A G C T A C G T G T A C C T G A A G T C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TTTTCACA--
NWWWTTTACCKT
 A C G T A C G T C G A T A G C T A G C T A C G T G T A C C T G A A G T C G C T A A C G T A C G T
G C A T C G T A C G A T C G A T C G A T A C G T G C A T C G T A G A T C G A T C C A T G G A C T