Information for 10-AGAAGAAG (Motif 38)

C G T A A C T G C G T A C G T A A C T G C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T A G T C A C G T A C G T A G T C A C G T
p-value:1e-3
log p-value:-8.481e+00
Information Content per bp:1.530
Number of Target Sequences with motif1241.0
Percentage of Target Sequences with motif98.96%
Number of Background Sequences with motif7914.5
Percentage of Background Sequences with motif97.53%
Average Position of motif in Targets165.8 +/- 95.2bp
Average Position of motif in Background163.0 +/- 98.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)4.34
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TRA2(RRM)/Drosophila_melanogaster-RNCMPT00078-PBM/HughesRNA

Match Rank:1
Score:0.89
Offset:1
Orientation:forward strand
Alignment:AGAAGAAG
-GAAGAAG
 C G T A A C T G C G T A C G T A A C T G C G T A C G T A A C T G
A C G T T C A G C G T A C T G A A T C G C G T A C G T A A T C G

PABPN1(RRM)/Homo_sapiens-RNCMPT00157-PBM/HughesRNA

Match Rank:2
Score:0.83
Offset:0
Orientation:forward strand
Alignment:AGAAGAAG
AGAAGAN-
 C G T A A C T G C G T A C G T A A C T G C G T A C G T A A C T G
C G T A C T A G C G T A C G T A T C A G C G T A A G T C A C G T

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:3
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--AGAAGAAG
RAAGAMGAMG
 A C G T A C G T C G T A A C T G C G T A C G T A A C T G C G T A C G T A A C T G
C T A G C T G A T G C A C T A G C G T A G T A C C T A G T G C A G T C A T A C G

PEND/MA0127.1/Jaspar

Match Rank:4
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-AGAAGAAG-
AATAAGAAGT
 A C G T C G T A A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C G T
T G C A C G T A A C G T G C T A T C G A C T A G G C T A G T C A T C A G A G C T

REF2(RRM)/Drosophila_melanogaster-RNCMPT00059-PBM/HughesRNA

Match Rank:5
Score:0.73
Offset:3
Orientation:forward strand
Alignment:AGAAGAAG--
---AGAAGGC
 C G T A A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C G T A A C T G C G T A C G T A C T A G T C A G G T A C

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGAAGAAG--
AGAGGAAGTG
 C G T A A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C G T A C G T
C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G

SFL1/MA0377.1/Jaspar

Match Rank:7
Score:0.70
Offset:-8
Orientation:forward strand
Alignment:--------AGAAGAAG-----
TAGAGAATAGAAGAAATAAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
G C A T G T C A T C A G G T C A C T A G G T C A C T G A G A C T T G C A C T A G G C T A C T G A A C T G T C G A G C T A G T C A G C A T C T G A C G T A C G T A G C T A

RBM5(RRM)/Homo_sapiens-RNCMPT00154-PBM/HughesRNA

Match Rank:8
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGAAGAAG
-GAAGGAG
 C G T A A C T G C G T A C G T A A C T G C G T A C G T A A C T G
A C G T A T C G C G T A T C G A A T C G A T C G C T G A C T A G

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:AGAAGAAG-
---NGAAGC
 C G T A A C T G C G T A C G T A A C T G C G T A C G T A A C T G A C G T
A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C

Tb_0230(RRM)/Trypanosoma_brucei-RNCMPT00230-PBM/HughesRNA

Match Rank:10
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGAAGAAG
AGAAGGAC
 C G T A A C T G C G T A C G T A A C T G C G T A C G T A A C T G
C T G A A C T G C G T A C G T A A C T G A C T G C T G A T G A C