Information for 7-GGAGCACA (Motif 35)

A C T G A C T G C G T A A C T G A G T C C G T A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T A C T G A G T C A C G T A G T C A G T C
p-value:1e-4
log p-value:-1.143e+01
Information Content per bp:1.530
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif3.35%
Number of Background Sequences with motif130.4
Percentage of Background Sequences with motif1.61%
Average Position of motif in Targets199.9 +/- 99.5bp
Average Position of motif in Background165.7 +/- 103.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCACA-
GGGAGGACNG
 A C G T A C T G A C T G C G T A A C T G A G T C C G T A A G T C C G T A A C G T
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

NCU08034(RRM)/Neurospora_crassa-RNCMPT00209-PBM/HughesRNA

Match Rank:2
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GGAGCACA-
-TAGCACAN
 A C T G A C T G C G T A A C T G A G T C C G T A A G T C C G T A A C G T
A C G T C G A T C G T A A C T G A G T C C G T A A G T C C T G A T C G A

CPO(RRM)/Drosophila_melanogaster-RNCMPT00133-PBM/HughesRNA

Match Rank:3
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GGAGCACA
-NTGCACA
 A C T G A C T G C G T A A C T G A G T C C G T A A G T C C G T A
A C G T C T G A G C A T A C T G A G T C C G T A A G T C C G T A

MEC-8(RRM)/Caenorhabditis_elegans-RNCMPT00181-PBM/HughesRNA

Match Rank:4
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GGAGCACA
-NTGCACA
 A C T G A C T G C G T A A C T G A G T C C G T A A G T C C G T A
A C G T C G T A C G A T A C T G A G T C C G T A A G T C C G T A

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCACA
CGGAGC---
 A C G T A C T G A C T G C G T A A C T G A G T C C G T A A G T C C G T A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T

MAC1/Literature(Harbison)/Yeast

Match Rank:6
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GGAGCACA
-GAGCAAA
 A C T G A C T G C G T A A C T G A G T C C G T A A G T C C G T A
A C G T A C T G C G T A A C T G A G T C C G T A C G T A C G T A

TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer

Match Rank:7
Score:0.74
Offset:-7
Orientation:reverse strand
Alignment:-------GGAGCACA
WWWDTTGGGACCACW
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C C G T A A G T C C G T A
C G A T C G T A C G A T C G A T G C A T C A G T C A T G C A T G A C T G G T C A A G T C G A T C C G T A A G T C G C T A

PB0099.1_Zfp691_1/Jaspar

Match Rank:8
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----GGAGCACA-----
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

MAC1/MA0326.1/Jaspar

Match Rank:9
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GGAGCACA
TGAGCAAA
 A C T G A C T G C G T A A C T G A G T C C G T A A G T C C G T A
G A C T A C T G C G T A A C T G A G T C C G T A G T C A C G T A

PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer

Match Rank:10
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GGAGCACA
RDDGGGACCACA
 A C G T A C G T A C G T A C G T A C T G A C T G C G T A A C T G A G T C C G T A A G T C C G T A
C T G A C G A T C A G T C A T G A C T G A T C G G T C A A G T C A G T C G T C A A G T C G C T A