Information for 2-GTGCCMGCCW (Motif 3)

A C T G G C A T A C T G A T G C G T A C T G A C A T C G A G T C A G T C G C A T
Reverse Opposite:
C G T A A C T G A C T G A T G C A C T G C A T G A T C G G T A C C G T A A G T C
p-value:1e-12
log p-value:-2.974e+01
Information Content per bp:1.769
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif7.10%
Number of Background Sequences with motif240.1
Percentage of Background Sequences with motif2.96%
Average Position of motif in Targets176.2 +/- 104.2bp
Average Position of motif in Background161.1 +/- 98.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GTGCCMGCCW-
-TTCCCGCCWG
 A C T G G C A T A C T G A T G C G T A C T G A C A T C G A G T C A G T C G C A T A C G T
A C G T A G C T A C G T A T G C A T G C A G T C A C T G A G T C A T G C G C T A A T C G

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GTGCCMGCCW---
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C T G G C A T A C T G A T G C G T A C T G A C A T C G A G T C A G T C G C A T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Vts1p(SAM)/Saccharomyces_cerevisiae-RNCMPT00111-PBM/HughesRNA

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GTGCCMGCCW
-GGCCAGCN-
 A C T G G C A T A C T G A T G C G T A C T G A C A T C G A G T C A G T C G C A T
A C G T A T C G C A T G A G T C A G T C G T C A A C T G A G T C T C G A A C G T

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GTGCCMGCCW
-AGCGCGCC-
 A C T G G C A T A C T G A T G C G T A C T G A C A T C G A G T C A G T C G C A T
A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T

SOK2(MacIsaac)/Yeast

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GTGCCMGCCW
TTGCCTGC--
 A C T G G C A T A C T G A T G C G T A C T G A C A T C G A G T C A G T C G C A T
A C G T A G C T A C T G A G T C T A G C A G C T C T A G G A T C A C G T A C G T

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GTGCCMGCCW--
TTTCCCGCCMAV
 A C T G G C A T A C T G A T G C G T A C T G A C A T C G A G T C A G T C G C A T A C G T A C G T
C G A T G A C T A C G T A T G C A T G C A G T C A C T G A T G C T A G C G T A C T G C A T G A C

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTGCCMGCCW
ATGCCAACC-
 A C T G G C A T A C T G A T G C G T A C T G A C A T C G A G T C A G T C G C A T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GTGCCMGCCW
AGGTGHCAGACA
 A C G T A C G T A C T G G C A T A C T G A T G C G T A C T G A C A T C G A G T C A G T C G C A T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

GCR1/Literature(Harbison)/Yeast

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTGCCMGCCW
GAGGAAGCC-
 A C T G G C A T A C T G A T G C G T A C T G A C A T C G A G T C A G T C G C A T
A C T G C G A T A C T G A C T G C G T A C G T A A C T G A G T C A G T C A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GTGCCMGCCW-
AGGTGNCAGACAG
 A C G T A C G T A C T G G C A T A C T G A T G C G T A C T G A C A T C G A G T C A G T C G C A T A C G T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G