Information for 17-AGTGCAGCTTAA (Motif 27)

C G T A A C T G A C G T A C T G A G T C C G T A A C T G A G T C A C G T A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A C G T A A C T G A G T C A C G T A C T G A G T C C G T A A G T C A C G T
p-value:1e-6
log p-value:-1.533e+01
Information Content per bp:1.530
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets153.1 +/- 83.4bp
Average Position of motif in Background154.1 +/- 87.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGTGCAGCTTAA
GGTGCACCDWAA
 C G T A A C T G A C G T A C T G A G T C C G T A A C T G A G T C A C G T A C G T C G T A C G T A
C A T G T C A G G C A T T C A G A G T C C G T A A G T C T A G C C G A T G C A T G T C A C G T A

bcd-1/dmmpmm(Noyes)/fly

Match Rank:2
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AGTGCAGCTTAA
-----AGATTAA
 C G T A A C T G A C G T A C T G A G T C C G T A A C T G A G T C A C G T A C G T C G T A C G T A
A C G T A C G T A C G T A C G T A C G T C T G A C T A G G T C A A C G T C G A T C G T A C T A G

bcd-1/dmmpmm(Noyes)/fly

Match Rank:3
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AGTGCAGCTTAA
-----AGATTAA
 C G T A A C T G A C G T A C T G A G T C C G T A A C T G A G T C A C G T A C G T C G T A C G T A
A C G T A C G T A C G T A C G T A C G T C T G A C T A G G T C A A C G T C G A T C G T A C T A G

PHD1/MA0355.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGTGCAGCTTAA
NGNTGCAGGN---
 A C G T C G T A A C T G A C G T A C T G A G T C C G T A A C T G A G T C A C G T A C G T C G T A C G T A
A C G T A C T G T G A C A G C T C T A G A G T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T

bcd/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AGTGCAGCTTAA
----NGGATTAN
 C G T A A C T G A C G T A C T G A G T C C G T A A C T G A G T C A C G T A C G T C G T A C G T A
A C G T A C G T A C G T A C G T T G A C T C A G C T A G G T C A A G C T A C G T C G T A C T A G

bcd/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AGTGCAGCTTAA
----NGGATTAG
 C G T A A C T G A C G T A C T G A G T C C G T A A C T G A G T C A C G T A C G T C G T A C G T A
A C G T A C G T A C G T A C G T T A G C T C A G C T A G G T C A A C G T G C A T C G T A C T A G

cad/dmmpmm(SeSiMCMC)/fly

Match Rank:7
Score:0.58
Offset:6
Orientation:forward strand
Alignment:AGTGCAGCTTAA-
------GCATAAA
 C G T A A C T G A C G T A C T G A G T C C G T A A C T G A G T C A C G T A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C G C T A C G A T G C T A G C T A G T C A

Pr_0249(RRM)/Phytophthora_ramorum-RNCMPT00249-PBM/HughesRNA

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGTGCAGCTTAA
TGTGCAA-----
 C G T A A C T G A C G T A C T G A G T C C G T A A C T G A G T C A C G T A C G T C G T A C G T A
G A C T A C T G A C G T A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T

bcd/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:AGTGCAGCTTAA
---ACGGATTAG
 C G T A A C T G A C G T A C T G A G T C C G T A A C T G A G T C A C G T A C G T C G T A C G T A
A C G T A C G T A C G T G T C A T G A C T C A G C T A G G T C A A C G T G A C T C G T A C T A G

byn/dmmpmm(SeSiMCMC)/fly

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGTGCAGCTTAA
-GTGCGAATT--
 C G T A A C T G A C G T A C T G A G T C C G T A A C T G A G T C A C G T A C G T C G T A C G T A
A C G T C T A G A G C T A C T G G A T C C T A G G T C A G C T A C G A T C G A T A C G T A C G T