Information for 2-GGCTCAAAACKG (Motif 2)

A C T G A C T G A G T C A C G T A T G C C G T A G T C A C G T A C G T A A G T C A C G T A C T G
Reverse Opposite:
A G T C T G A C C T A G A C G T A C G T A C G T A C G T A T C G C G T A A C T G A G T C A G T C
p-value:1e-12
log p-value:-2.977e+01
Information Content per bp:1.869
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets193.7 +/- 87.6bp
Average Position of motif in Background63.5 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ng_0261(RRM)/Naegleria_gruberi-RNCMPT00261-PBM/HughesRNA

Match Rank:1
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GGCTCAAAACKG
----CAAAATT-
 A C T G A C T G A G T C A C G T A T G C C G T A G T C A C G T A C G T A A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A G T C C G T A C G T A C G T A C G T A G A C T A G C T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GGCTCAAAACKG
NGGATTAN-----
 A C G T A C T G A C T G A G T C A C G T A T G C C G T A G T C A C G T A C G T A A G T C A C G T A C T G
C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGCTCAAAACKG
NGCTN-------
 A C T G A C T G A G T C A C G T A T G C C G T A G T C A C G T A C G T A A G T C A C G T A C T G
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGCTCAAAACKG-
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C T G A C T G A G T C A C G T A T G C C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

ROX8(RRM)/Drosophila_melanogaster-RNCMPT00148-PBM/HughesRNA

Match Rank:5
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GGCTCAAAACKG
-----AAAATGG
 A C T G A C T G A G T C A C G T A T G C C G T A G T C A C G T A C G T A A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A C T G A C G A T C T A G A C T G

prd/dmmpmm(Down)/fly

Match Rank:6
Score:0.58
Offset:6
Orientation:forward strand
Alignment:GGCTCAAAACKG
------AAACTG
 A C T G A C T G A G T C A C G T A T G C C G T A G T C A C G T A C G T A A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A G C T A A G T C A G C T T C A G

Hr46/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGCTCAAAACKG
GGGTCA------
 A C T G A C T G A G T C A C G T A T G C C G T A G T C A C G T A C G T A A G T C A C G T A C T G
A C T G A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGCTCAAAACKG-
-GCTAAAAATAGC
 A C T G A C T G A G T C A C G T A T G C C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T
A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C

MEF2B/MA0660.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGCTCAAAACKG-
-GCTATAAATAGC
 A C T G A C T G A G T C A C G T A T G C C G T A G T C A C G T A C G T A A G T C A C G T A C T G A C G T
A C G T C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GGCTCAAAACKG
--CCAAAAATAG
 A C T G A C T G A G T C A C G T A T G C C G T A G T C A C G T A C G T A A G T C A C G T A C T G
A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G