Information for 8-AGAGAGWGAG (Motif 16)

C T G A T A C G C T G A C T A G C T G A A T C G C G A T T A C G C T G A C T A G
Reverse Opposite:
G A T C G A C T A T G C G C T A T A G C G A C T G A T C G A C T A T G C A G C T
p-value:1e-9
log p-value:-2.096e+01
Information Content per bp:1.688
Number of Target Sequences with motif270.0
Percentage of Target Sequences with motif21.53%
Number of Background Sequences with motif1224.5
Percentage of Background Sequences with motif15.09%
Average Position of motif in Targets174.1 +/- 114.7bp
Average Position of motif in Background157.4 +/- 111.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: GA-repeat

Match Rank:1
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGWGAG
GAGAGAGAGA-
 A C G T C T G A T A C G C T G A C T A G C T G A A T C G C G A T T A C G C T G A C T A G
C T A G C T G A C T A G C T G A C T A G C T G A C T A G C T G A C T A G C T G A A C G T

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:2
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:AGAGAGWGAG
RGAGAGAGAG
 C T G A T A C G C T G A C T A G C T G A A T C G C G A T T A C G C T G A C T A G
C T G A T A C G C G T A A T C G C G T A A T C G G C T A A T C G C G T A T A C G

Trl/dmmpmm(Down)/fly

Match Rank:3
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGWGAG-
GAGAGAGAGAGC
 A C G T C T G A T A C G C T G A C T A G C T G A A T C G C G A T T A C G C T G A C T A G A C G T
T C A G T G C A T C A G G T C A C A T G T C G A T C A G G T C A C T A G T G C A C T A G G T A C

FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.80
Offset:0
Orientation:forward strand
Alignment:AGAGAGWGAG--
RGAGAGAGAAAG
 C T G A T A C G C T G A C T A G C T G A A T C G C G A T T A C G C T G A C T A G A C G T A C G T
C T A G C T A G T C G A C T A G C G T A A T C G T C G A A C T G C T G A T C G A C T G A T A C G

BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer

Match Rank:5
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---AGAGAGWGAG--
TAGAGAGAGAGARAR
 A C G T A C G T A C G T C T G A T A C G C T G A C T A G C T G A A T C G C G A T T A C G C T G A C T A G A C G T A C G T
C A G T G C T A A C T G C G T A A C T G C G T A A C T G C G T A C T A G C G T A C T A G C G T A C T G A C T G A C T A G

Trl/dmmpmm(SeSiMCMC)/fly

Match Rank:6
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGWGAG---
GAGAGAGAGAGCAA
 A C G T C T G A T A C G C T G A C T A G C T G A A T C G C G A T T A C G C T G A C T A G A C G T A C G T A C G T
T C A G T G C A T C A G G C T A A C T G T G C A T C A G C T G A C T A G G T C A C T A G G T A C T C G A C T G A

Trl/dmmpmm(Bigfoot)/fly

Match Rank:7
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:AGAGAGWGAG---
AGAGAGAGAGNAA
 C T G A T A C G C T G A C T A G C T G A A T C G C G A T T A C G C T G A C T A G A C G T A C G T A C G T
G C T A T C A G C T G A C A T G T C G A T C A G G T C A A T C G G T C A T C A G T G C A G C T A C T G A

GAGA-repeat/SacCer-Promoters/Homer

Match Rank:8
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-AGAGAGWGAG----
GAGAGAGARAGARAG
 A C G T C T G A T A C G C T G A C T A G C T G A A T C G C G A T T A C G C T G A C T A G A C G T A C G T A C G T A C G T
C T A G T C G A C T A G T G C A T C A G C T G A C T A G C T G A C T A G T C G A C T A G C T G A C T A G C G T A C T A G

BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--AGAGAGWGAG
GARGAGAGAGAA
 A C G T A C G T C T G A T A C G C T G A C T A G C T G A A T C G C G A T T A C G C T G A C T A G
C A T G G C T A C T A G T A C G C G T A T C A G C G T A A C T G C G T A C A T G C T G A C G T A

Trl/dmmpmm(Pollard)/fly

Match Rank:10
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGAGAGWGAG
GAGAGAGCAA-
 A C G T C T G A T A C G C T G A C T A G C T G A A T C G C G A T T A C G C T G A C T A G
T C A G T C G A A T C G G C T A A C T G G T C A T C A G G T A C T C G A T C G A A C G T