Information for 1-ATKACAATAG (Motif 1)

G T C A A C G T C A T G C G T A A G T C G C T A G T C A G A C T C T G A C A T G
Reverse Opposite:
G T A C G A C T C T G A C A G T C G A T T C A G G C A T G T A C G T C A C A G T
p-value:1e-18
log p-value:-4.182e+01
Information Content per bp:1.646
Number of Target Sequences with motif145.0
Percentage of Target Sequences with motif11.56%
Number of Background Sequences with motif421.1
Percentage of Background Sequences with motif5.19%
Average Position of motif in Targets152.5 +/- 62.9bp
Average Position of motif in Background151.8 +/- 72.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17/MA0078.1/Jaspar

Match Rank:1
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:ATKACAATAG-
--GACAATGNN
 G T C A A C G T C A T G C G T A A G T C G C T A G T C A G A C T C T G A C A T G A C G T
A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

D/MA0445.1/Jaspar

Match Rank:2
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:ATKACAATAG-
ANAACAATGGA
 G T C A A C G T C A T G C G T A A G T C G C T A G T C A G A C T C T G A C A T G A C G T
C G T A T C A G T G C A C G T A A G T C G T C A C G T A C G A T C T A G C T A G T C G A

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:ATKACAATAG
-GAACAATGG
 G T C A A C G T C A T G C G T A A G T C G C T A G T C A G A C T C T G A C A T G
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

PB0073.1_Sox7_1/Jaspar

Match Rank:4
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----ATKACAATAG-------
AATAAAGAACAATAGAATTTCA
 A C G T A C G T A C G T A C G T A C G T G T C A A C G T C A T G C G T A A G T C G C T A G T C A G A C T C T G A C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:ATKACAATAG
RNAACAATGG
 G T C A A C G T C A T G C G T A A G T C G C T A G T C A G A C T C T G A C A T G
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:ATKACAATAG
VRAACAATGG
 G T C A A C G T C A T G C G T A A G T C G C T A G T C A G A C T C T G A C A T G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

PB0065.1_Sox15_1/Jaspar

Match Rank:7
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---ATKACAATAG----
TAGTGAACAATAGATTT
 A C G T A C G T A C G T G T C A A C G T C A T G C G T A A G T C G C T A G T C A G A C T C T G A C A T G A C G T A C G T A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:8
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----ATKACAATAG--
NNTNANAACAATTNNA
 A C G T A C G T A C G T A C G T G T C A A C G T C A T G C G T A A G T C G C T A G T C A G A C T C T G A C A T G A C G T A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0074.1_Sox8_1/Jaspar

Match Rank:9
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---ATKACAATAG----
TNNAGAACAATANATNN
 A C G T A C G T A C G T G T C A A C G T C A T G C G T A A G T C G C T A G T C A G A C T C T G A C A T G A C G T A C G T A C G T A C G T
G C A T G C T A G T C A C G T A C A T G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C A T G T C A G T A C

D/dmmpmm(Noyes)/fly

Match Rank:10
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----ATKACAATAG
CACNGANAACAATGG
 A C G T A C G T A C G T A C G T A C G T G T C A A C G T C A T G C G T A A G T C G C T A G T C A G A C T C T G A C A T G
T G A C T G C A G A T C A G T C C T A G C G T A T A C G T G C A C G T A A G T C G T C A G T C A C G A T C T A G T C A G