Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3764)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 7469)	% of Background Sequences with Motif
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-15	-3.544e+01	0.0000	1400.0	37.19%	2316.2	31.01%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-14	-3.365e+01	0.0000	1996.0	53.03%	3483.6	46.64%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-13	-3.068e+01	0.0000	1284.0	34.11%	2131.0	28.53%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-12	-2.917e+01	0.0000	2296.0	61.00%	4118.3	55.14%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-10	-2.516e+01	0.0000	2514.0	66.79%	4595.2	61.53%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-10	-2.486e+01	0.0000	1150.0	30.55%	1921.4	25.73%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-9	-2.301e+01	0.0000	2104.0	55.90%	3787.3	50.71%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e-9	-2.278e+01	0.0000	954.0	25.35%	1571.5	21.04%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-9	-2.209e+01	0.0000	1168.0	31.03%	1977.4	26.48%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-9	-2.133e+01	0.0000	2120.0	56.32%	3835.4	51.35%
SeqBias: TA-repeat	TATATATATA	1e-9	-2.129e+01	0.0000	1894.0	50.32%	3388.0	45.36%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-9	-2.127e+01	0.0000	1254.0	33.32%	2147.8	28.76%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-9	-2.124e+01	0.0000	1226.0	32.57%	2094.8	28.05%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-8	-2.055e+01	0.0000	720.0	19.13%	1157.9	15.50%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-8	-2.031e+01	0.0000	1618.0	42.99%	2856.6	38.25%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-8	-1.998e+01	0.0000	902.0	23.96%	1496.5	20.04%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-8	-1.984e+01	0.0000	910.0	24.18%	1512.3	20.25%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-8	-1.950e+01	0.0000	1598.0	42.45%	2825.7	37.83%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-8	-1.934e+01	0.0000	1246.0	33.10%	2149.4	28.78%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-8	-1.924e+01	0.0000	2618.0	69.55%	4863.2	65.11%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-8	-1.910e+01	0.0000	728.0	19.34%	1182.5	15.83%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-8	-1.897e+01	0.0000	1034.0	27.47%	1752.0	23.46%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-8	-1.856e+01	0.0000	796.0	21.15%	1311.9	17.57%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-7	-1.821e+01	0.0000	1178.0	31.30%	2030.7	27.19%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e-7	-1.802e+01	0.0000	1356.0	36.03%	2372.3	31.76%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-7	-1.799e+01	0.0000	638.0	16.95%	1026.2	13.74%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-7	-1.752e+01	0.0000	1808.0	48.03%	3256.2	43.60%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-7	-1.744e+01	0.0000	1056.0	28.06%	1807.0	24.19%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-7	-1.741e+01	0.0000	1784.0	47.40%	3210.0	42.98%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-7	-1.725e+01	0.0000	2414.0	64.13%	4468.0	59.82%
SeqBias: CG bias	SSSSSSSSSS	1e-7	-1.721e+01	0.0000	3234.0	85.92%	6173.7	82.66%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-7	-1.718e+01	0.0000	1798.0	47.77%	3240.1	43.38%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-7	-1.665e+01	0.0000	988.0	26.25%	1685.8	22.57%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-7	-1.644e+01	0.0000	1502.0	39.90%	2670.6	35.76%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-6	-1.596e+01	0.0000	344.0	9.14%	515.1	6.90%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-6	-1.585e+01	0.0000	3070.0	81.56%	5836.8	78.15%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-6	-1.560e+01	0.0000	468.0	12.43%	736.2	9.86%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-6	-1.550e+01	0.0000	2812.0	74.71%	5301.4	70.98%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-6	-1.549e+01	0.0000	1760.0	46.76%	3184.6	42.64%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-6	-1.532e+01	0.0000	1504.0	39.96%	2686.9	35.97%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-6	-1.509e+01	0.0000	838.0	22.26%	1418.4	18.99%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-6	-1.488e+01	0.0000	1334.0	35.44%	2362.1	31.63%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-6	-1.461e+01	0.0000	2196.0	58.34%	4059.3	54.35%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-6	-1.431e+01	0.0000	816.0	21.68%	1384.1	18.53%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e-5	-1.372e+01	0.0000	1508.0	40.06%	2712.7	36.32%
SeqBias: GA-repeat	GAGAGAGAGA	1e-5	-1.366e+01	0.0000	3228.0	85.76%	6192.9	82.92%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-5	-1.362e+01	0.0000	1960.0	52.07%	3601.9	48.23%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-5	-1.336e+01	0.0000	426.0	11.32%	676.2	9.05%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-5	-1.285e+01	0.0000	90.0	2.39%	106.6	1.43%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-5	-1.281e+01	0.0001	986.0	26.20%	1719.0	23.02%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-5	-1.267e+01	0.0001	1352.0	35.92%	2422.1	32.43%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-5	-1.257e+01	0.0001	460.0	12.22%	743.3	9.95%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e-5	-1.245e+01	0.0001	856.0	22.74%	1477.7	19.79%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-5	-1.231e+01	0.0001	834.0	22.16%	1437.0	19.24%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-5	-1.192e+01	0.0001	1078.0	28.64%	1904.7	25.50%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-5	-1.190e+01	0.0001	324.0	8.61%	504.5	6.76%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e-5	-1.189e+01	0.0001	384.0	10.20%	611.3	8.18%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e-5	-1.172e+01	0.0001	366.0	9.72%	580.7	7.77%
SeqBias: CA-repeat	CACACACACA	1e-5	-1.156e+01	0.0001	2952.0	78.43%	5635.3	75.45%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-4	-1.143e+01	0.0002	158.0	4.20%	220.8	2.96%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e-4	-1.140e+01	0.0002	86.0	2.28%	104.0	1.39%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-4	-1.136e+01	0.0002	1388.0	36.88%	2508.6	33.59%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-4	-1.128e+01	0.0002	1156.0	30.71%	2061.7	27.60%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-4	-1.122e+01	0.0002	864.0	22.95%	1506.0	20.16%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-4	-1.108e+01	0.0002	1972.0	52.39%	3658.9	48.99%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-4	-1.106e+01	0.0002	470.0	12.49%	773.1	10.35%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-4	-1.104e+01	0.0002	1406.0	37.35%	2547.6	34.11%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-4	-1.099e+01	0.0002	2306.0	61.26%	4326.9	57.93%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-4	-1.092e+01	0.0002	426.0	11.32%	694.5	9.30%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-4	-1.073e+01	0.0003	1324.0	35.18%	2392.1	32.03%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-4	-1.066e+01	0.0003	2614.0	69.45%	4953.3	66.32%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-4	-1.054e+01	0.0003	502.0	13.34%	836.5	11.20%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-4	-1.052e+01	0.0003	1720.0	45.70%	3168.7	42.43%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-4	-1.050e+01	0.0003	996.0	26.46%	1764.4	23.62%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-4	-1.036e+01	0.0004	620.0	16.47%	1056.5	14.15%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-4	-1.029e+01	0.0004	618.0	16.42%	1053.6	14.11%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e-4	-1.017e+01	0.0005	2872.0	76.30%	5487.6	73.47%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-4	-1.015e+01	0.0005	184.0	4.89%	270.0	3.62%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-4	-1.010e+01	0.0005	262.0	6.96%	406.6	5.44%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e-4	-1.006e+01	0.0005	584.0	15.52%	992.7	13.29%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-4	-9.981e+00	0.0005	1188.0	31.56%	2139.3	28.64%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-4	-9.934e+00	0.0005	812.0	21.57%	1421.1	19.03%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-4	-9.793e+00	0.0006	2394.0	63.60%	4520.7	60.53%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-4	-9.762e+00	0.0006	2634.0	69.98%	5006.9	67.04%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-4	-9.692e+00	0.0007	1912.0	50.80%	3559.5	47.66%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-4	-9.682e+00	0.0007	306.0	8.13%	487.6	6.53%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-4	-9.658e+00	0.0007	220.0	5.84%	335.5	4.49%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e-4	-9.593e+00	0.0007	900.0	23.91%	1592.8	21.33%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-4	-9.561e+00	0.0007	598.0	15.89%	1023.5	13.70%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-4	-9.452e+00	0.0008	398.0	10.57%	655.4	8.77%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e-4	-9.363e+00	0.0009	1284.0	34.11%	2333.1	31.24%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-4	-9.338e+00	0.0009	144.0	3.83%	206.7	2.77%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-4	-9.330e+00	0.0009	228.0	6.06%	351.3	4.70%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-4	-9.311e+00	0.0009	90.0	2.39%	117.5	1.57%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-4	-9.306e+00	0.0009	960.0	25.50%	1711.0	22.91%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-4	-9.275e+00	0.0009	172.0	4.57%	254.4	3.41%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-4	-9.270e+00	0.0009	652.0	17.32%	1127.9	15.10%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-3	-9.171e+00	0.0010	454.0	12.06%	760.5	10.18%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-3	-9.131e+00	0.0010	806.0	21.41%	1419.6	19.01%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-3	-9.087e+00	0.0010	1426.0	37.89%	2613.3	34.99%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-3	-9.052e+00	0.0011	886.0	23.54%	1572.6	21.06%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e-3	-9.039e+00	0.0011	988.0	26.25%	1767.2	23.66%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-3	-9.032e+00	0.0011	1102.0	29.28%	1986.9	26.60%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-3	-8.974e+00	0.0011	410.0	10.89%	681.9	9.13%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e-3	-8.835e+00	0.0013	650.0	17.27%	1128.1	15.10%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-3	-8.824e+00	0.0013	1010.0	26.83%	1812.6	24.27%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-3	-8.665e+00	0.0015	196.0	5.21%	299.4	4.01%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e-3	-8.623e+00	0.0015	566.0	15.04%	973.1	13.03%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-3	-8.549e+00	0.0016	982.0	26.09%	1762.3	23.60%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-3	-8.522e+00	0.0017	398.0	10.57%	663.4	8.88%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e-3	-8.511e+00	0.0017	1360.0	36.13%	2493.5	33.39%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-3	-8.504e+00	0.0017	98.0	2.60%	133.3	1.78%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-3	-8.400e+00	0.0018	836.0	22.21%	1485.1	19.88%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-3	-8.392e+00	0.0018	936.0	24.87%	1676.7	22.45%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-3	-8.307e+00	0.0020	546.0	14.51%	939.4	12.58%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e-3	-8.289e+00	0.0020	1180.0	31.35%	2147.6	28.75%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-3	-8.210e+00	0.0021	146.0	3.88%	215.7	2.89%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-3	-8.193e+00	0.0022	518.0	13.76%	888.5	11.90%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-3	-8.187e+00	0.0022	2720.0	72.26%	5204.4	69.68%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-3	-8.170e+00	0.0022	184.0	4.89%	281.8	3.77%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-3	-8.126e+00	0.0023	1070.0	28.43%	1937.3	25.94%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-3	-8.005e+00	0.0025	240.0	6.38%	381.8	5.11%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-3	-7.993e+00	0.0025	700.0	18.60%	1232.9	16.51%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-3	-7.961e+00	0.0026	328.0	8.71%	540.1	7.23%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-3	-7.915e+00	0.0027	510.0	13.55%	876.6	11.74%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-3	-7.890e+00	0.0027	304.0	8.08%	497.8	6.67%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-3	-7.890e+00	0.0027	1454.0	38.63%	2686.7	35.97%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-3	-7.853e+00	0.0028	940.0	24.97%	1691.4	22.65%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-3	-7.851e+00	0.0028	990.0	26.30%	1787.1	23.93%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-3	-7.764e+00	0.0030	766.0	20.35%	1360.4	18.21%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-3	-7.756e+00	0.0030	718.0	19.08%	1269.6	17.00%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-7.752e+00	0.0030	728.0	19.34%	1288.4	17.25%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-3	-7.700e+00	0.0031	954.0	25.35%	1720.5	23.04%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e-3	-7.685e+00	0.0032	920.0	24.44%	1655.1	22.16%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-3	-7.624e+00	0.0033	526.0	13.97%	909.5	12.18%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-3	-7.493e+00	0.0038	328.0	8.71%	544.8	7.29%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-3	-7.474e+00	0.0038	2684.0	71.31%	5142.7	68.85%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-3	-7.422e+00	0.0040	136.0	3.61%	202.7	2.71%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e-3	-7.276e+00	0.0046	582.0	15.46%	1018.6	13.64%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e-3	-7.246e+00	0.0047	764.0	20.30%	1363.4	18.25%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e-3	-7.237e+00	0.0047	1148.0	30.50%	2101.3	28.13%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-3	-7.226e+00	0.0047	902.0	23.96%	1628.0	21.80%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e-3	-7.218e+00	0.0047	264.0	7.01%	430.2	5.76%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-3	-7.207e+00	0.0047	144.0	3.83%	217.4	2.91%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-3	-7.206e+00	0.0047	1352.0	35.92%	2498.2	33.45%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e-3	-7.108e+00	0.0052	1968.0	52.28%	3712.1	49.70%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-3	-7.067e+00	0.0054	812.0	21.57%	1457.7	19.52%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-3	-7.065e+00	0.0054	1300.0	34.54%	2400.0	32.13%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-3	-7.013e+00	0.0056	1260.0	33.48%	2322.1	31.09%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-3	-7.009e+00	0.0056	1318.0	35.02%	2435.2	32.60%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-6.975e+00	0.0057	596.0	15.83%	1048.0	14.03%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e-3	-6.916e+00	0.0060	780.0	20.72%	1398.1	18.72%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e-2	-6.812e+00	0.0066	1082.0	28.75%	1980.0	26.51%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-2	-6.805e+00	0.0066	662.0	17.59%	1175.7	15.74%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2	-6.759e+00	0.0069	338.0	8.98%	569.5	7.63%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-2	-6.743e+00	0.0070	710.0	18.86%	1267.7	16.97%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-2	-6.715e+00	0.0071	270.0	7.17%	446.0	5.97%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-6.712e+00	0.0071	132.0	3.51%	199.8	2.68%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-2	-6.709e+00	0.0071	768.0	20.40%	1378.8	18.46%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-2	-6.667e+00	0.0073	700.0	18.60%	1249.0	16.72%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-2	-6.610e+00	0.0077	36.0	0.96%	42.0	0.56%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e-2	-6.603e+00	0.0077	796.0	21.15%	1433.6	19.19%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-2	-6.535e+00	0.0082	1242.0	33.00%	2295.3	30.73%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-2	-6.478e+00	0.0086	88.0	2.34%	125.3	1.68%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-6.477e+00	0.0086	440.0	11.69%	761.9	10.20%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-2	-6.469e+00	0.0086	572.0	15.20%	1009.6	13.52%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-2	-6.428e+00	0.0089	314.0	8.34%	528.2	7.07%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-2	-6.399e+00	0.0091	580.0	15.41%	1025.1	13.72%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e-2	-6.373e+00	0.0093	2952.0	78.43%	5706.3	76.40%
SeqBias: A/T bias	WWWWWWWWWW	1e-2	-6.335e+00	0.0096	3744.0	99.47%	7395.4	99.02%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-2	-6.314e+00	0.0098	78.0	2.07%	109.8	1.47%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e-2	-6.283e+00	0.0100	42.0	1.12%	51.3	0.69%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-2	-6.268e+00	0.0101	738.0	19.61%	1327.9	17.78%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-2	-6.171e+00	0.0111	384.0	10.20%	660.3	8.84%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-2	-6.163e+00	0.0111	2424.0	64.40%	4640.5	62.13%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-2	-6.064e+00	0.0122	274.0	7.28%	458.4	6.14%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-2	-5.973e+00	0.0133	462.0	12.27%	808.8	10.83%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e-2	-5.959e+00	0.0134	2000.0	53.13%	3797.2	50.84%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-2	-5.932e+00	0.0137	630.0	16.74%	1126.3	15.08%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-5.889e+00	0.0142	964.0	25.61%	1767.3	23.66%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e-2	-5.868e+00	0.0144	120.0	3.19%	183.6	2.46%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-2	-5.859e+00	0.0145	66.0	1.75%	91.1	1.22%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-2	-5.810e+00	0.0151	264.0	7.01%	442.4	5.92%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e-2	-5.803e+00	0.0151	230.0	6.11%	380.9	5.10%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e-2	-5.801e+00	0.0151	900.0	23.91%	1645.8	22.04%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-5.793e+00	0.0151	160.0	4.25%	254.9	3.41%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e-2	-5.747e+00	0.0157	1242.0	33.00%	2309.9	30.93%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-2	-5.710e+00	0.0162	202.0	5.37%	330.2	4.42%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-2	-5.649e+00	0.0172	1366.0	36.29%	2553.2	34.18%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-5.623e+00	0.0175	1066.0	28.32%	1969.8	26.37%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e-2	-5.587e+00	0.0181	880.0	23.38%	1610.2	21.56%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e-2	-5.576e+00	0.0182	1132.0	30.07%	2098.3	28.09%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-5.570e+00	0.0182	642.0	17.06%	1154.6	15.46%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-2	-5.514e+00	0.0191	80.0	2.13%	117.0	1.57%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-5.438e+00	0.0206	144.0	3.83%	228.2	3.06%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e-2	-5.419e+00	0.0208	452.0	12.01%	796.2	10.66%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-2	-5.406e+00	0.0210	462.0	12.27%	815.5	10.92%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-2	-5.387e+00	0.0213	628.0	16.68%	1130.9	15.14%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-2	-5.367e+00	0.0216	180.0	4.78%	293.2	3.93%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-2	-5.343e+00	0.0221	2042.0	54.25%	3893.3	52.13%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e-2	-5.337e+00	0.0221	2052.0	54.52%	3913.3	52.40%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-2	-5.317e+00	0.0224	490.0	13.02%	869.4	11.64%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e-2	-5.298e+00	0.0227	188.0	4.99%	308.5	4.13%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-2	-5.286e+00	0.0229	774.0	20.56%	1411.5	18.90%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e-2	-5.259e+00	0.0234	402.0	10.68%	704.2	9.43%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-2	-5.246e+00	0.0236	132.0	3.51%	208.5	2.79%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-2	-5.231e+00	0.0238	1068.0	28.37%	1980.3	26.51%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-2	-5.203e+00	0.0244	112.0	2.98%	173.4	2.32%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e-2	-5.170e+00	0.0251	1632.0	43.36%	3085.8	41.32%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e-2	-5.163e+00	0.0251	240.0	6.38%	404.9	5.42%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e-2	-5.163e+00	0.0251	54.0	1.43%	74.3	0.99%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-2	-5.142e+00	0.0254	766.0	20.35%	1398.5	18.72%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-5.135e+00	0.0255	336.0	8.93%	582.2	7.80%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-2	-5.108e+00	0.0260	1848.0	49.10%	3513.5	47.04%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-2	-5.058e+00	0.0273	2544.0	67.59%	4903.3	65.65%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-2	-5.054e+00	0.0273	3756.0	99.79%	7432.8	99.52%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-2	-5.033e+00	0.0277	308.0	8.18%	531.7	7.12%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-2	-5.023e+00	0.0278	338.0	8.98%	587.5	7.87%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-2	-5.010e+00	0.0281	378.0	10.04%	662.6	8.87%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e-2	-4.994e+00	0.0284	180.0	4.78%	296.8	3.97%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-2	-4.942e+00	0.0298	308.0	8.18%	532.2	7.13%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e-2	-4.881e+00	0.0315	452.0	12.01%	803.2	10.75%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-4.824e+00	0.0332	268.0	7.12%	459.6	6.15%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-4.817e+00	0.0333	602.0	15.99%	1089.3	14.58%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-2	-4.816e+00	0.0333	1584.0	42.08%	2998.9	40.15%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-2	-4.812e+00	0.0333	2382.0	63.28%	4583.1	61.36%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e-2	-4.797e+00	0.0335	400.0	10.63%	706.0	9.45%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-2	-4.785e+00	0.0338	344.0	9.14%	601.6	8.05%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e-2	-4.749e+00	0.0349	76.0	2.02%	113.1	1.51%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-2	-4.729e+00	0.0354	80.0	2.13%	120.9	1.62%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-2	-4.722e+00	0.0355	304.0	8.08%	527.3	7.06%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-4.713e+00	0.0357	632.0	16.79%	1148.3	15.37%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-4.673e+00	0.0370	432.0	11.48%	768.6	10.29%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e-2	-4.661e+00	0.0373	356.0	9.46%	625.8	8.38%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-2	-4.657e+00	0.0373	756.0	20.09%	1387.2	18.57%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-4.599e+00	0.0393	414.0	11.00%	735.5	9.85%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-1	-4.595e+00	0.0393	22.0	0.58%	25.1	0.34%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-4.589e+00	0.0394	644.0	17.11%	1173.1	15.71%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-4.560e+00	0.0403	146.0	3.88%	238.5	3.19%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-4.495e+00	0.0429	714.0	18.97%	1309.9	17.54%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-4.485e+00	0.0431	182.0	4.84%	304.5	4.08%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e-1	-4.460e+00	0.0440	386.0	10.26%	684.5	9.16%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-4.459e+00	0.0440	12.0	0.32%	12.0	0.16%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-4.458e+00	0.0440	634.0	16.84%	1156.0	15.48%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e-1	-4.454e+00	0.0440	94.0	2.50%	146.5	1.96%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-4.451e+00	0.0440	698.0	18.54%	1279.9	17.14%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-4.449e+00	0.0440	648.0	17.22%	1183.5	15.85%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-4.447e+00	0.0440	184.0	4.89%	308.6	4.13%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-4.440e+00	0.0440	64.0	1.70%	94.6	1.27%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-4.426e+00	0.0441	408.0	10.84%	726.2	9.72%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-4.421e+00	0.0441	356.0	9.46%	628.2	8.41%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-4.416e+00	0.0442	528.0	14.03%	954.4	12.78%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-1	-4.410e+00	0.0443	410.0	10.89%	730.8	9.78%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e-1	-4.371e+00	0.0459	652.0	17.32%	1192.7	15.97%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-1	-4.365e+00	0.0460	84.0	2.23%	129.7	1.74%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-4.311e+00	0.0483	56.0	1.49%	81.2	1.09%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-1	-4.282e+00	0.0496	446.0	11.85%	801.0	10.72%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e-1	-4.264e+00	0.0503	240.0	6.38%	413.8	5.54%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-4.262e+00	0.0503	500.0	13.28%	903.1	12.09%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-4.255e+00	0.0503	848.0	22.53%	1572.2	21.05%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-1	-4.252e+00	0.0503	214.0	5.69%	365.9	4.90%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-4.240e+00	0.0507	404.0	10.73%	721.7	9.66%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-4.239e+00	0.0507	582.0	15.46%	1060.1	14.19%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e-1	-4.228e+00	0.0509	378.0	10.04%	673.0	9.01%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-4.211e+00	0.0516	296.0	7.86%	518.1	6.94%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-1	-4.198e+00	0.0521	76.0	2.02%	116.7	1.56%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e-1	-4.180e+00	0.0528	20.0	0.53%	23.2	0.31%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e-1	-4.171e+00	0.0531	1012.0	26.89%	1892.3	25.34%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-1	-4.162e+00	0.0534	660.0	17.53%	1211.9	16.23%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e-1	-4.143e+00	0.0542	52.0	1.38%	76.0	1.02%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e-1	-4.134e+00	0.0545	954.0	25.35%	1780.0	23.83%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-1	-4.119e+00	0.0551	440.0	11.69%	791.8	10.60%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e-1	-4.106e+00	0.0556	452.0	12.01%	814.5	10.91%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-4.067e+00	0.0577	294.0	7.81%	516.1	6.91%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-4.063e+00	0.0577	1524.0	40.49%	2897.3	38.79%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e-1	-4.059e+00	0.0577	50.0	1.33%	72.9	0.98%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e-1	-4.055e+00	0.0577	188.0	4.99%	320.0	4.28%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e-1	-4.053e+00	0.0577	816.0	21.68%	1514.3	20.27%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-1	-4.053e+00	0.0577	816.0	21.68%	1514.4	20.28%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-1	-4.044e+00	0.0577	88.0	2.34%	138.4	1.85%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e-1	-4.041e+00	0.0577	30.0	0.80%	39.1	0.52%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-1	-4.035e+00	0.0578	68.0	1.81%	103.9	1.39%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e-1	-4.030e+00	0.0579	314.0	8.34%	554.6	7.42%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e-1	-4.030e+00	0.0579	678.0	18.01%	1248.4	16.72%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-4.012e+00	0.0585	592.0	15.73%	1083.7	14.51%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-1	-3.961e+00	0.0614	394.0	10.47%	706.1	9.45%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e-1	-3.939e+00	0.0625	4.0	0.11%	2.5	0.03%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e-1	-3.924e+00	0.0633	284.0	7.55%	499.6	6.69%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e-1	-3.897e+00	0.0647	756.0	20.09%	1401.7	18.77%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e-1	-3.884e+00	0.0654	138.0	3.67%	229.3	3.07%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e-1	-3.867e+00	0.0663	1214.0	32.25%	2293.8	30.71%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-1	-3.852e+00	0.0671	118.0	3.13%	193.2	2.59%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e-1	-3.848e+00	0.0671	786.0	20.88%	1461.0	19.56%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e-1	-3.814e+00	0.0692	218.0	5.79%	377.9	5.06%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-3.811e+00	0.0692	54.0	1.43%	80.7	1.08%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-3.811e+00	0.0692	54.0	1.43%	80.7	1.08%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-1	-3.806e+00	0.0692	86.0	2.28%	136.4	1.83%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-3.801e+00	0.0692	654.0	17.38%	1206.0	16.15%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-3.758e+00	0.0719	48.0	1.28%	70.6	0.95%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.749e+00	0.0724	1788.0	47.50%	3426.7	45.88%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-3.739e+00	0.0728	88.0	2.34%	140.7	1.88%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e-1	-3.712e+00	0.0746	298.0	7.92%	528.2	7.07%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-1	-3.699e+00	0.0753	172.0	4.57%	293.9	3.94%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-3.692e+00	0.0756	712.0	18.92%	1320.9	17.69%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-1	-3.680e+00	0.0763	470.0	12.49%	855.0	11.45%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e-1	-3.675e+00	0.0764	338.0	8.98%	604.4	8.09%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-1	-3.667e+00	0.0767	2038.0	54.14%	3924.1	52.54%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e-1	-3.640e+00	0.0786	1086.0	28.85%	2048.4	27.43%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.631e+00	0.0790	34.0	0.90%	48.0	0.64%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-1	-3.617e+00	0.0799	134.0	3.56%	224.1	3.00%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-3.615e+00	0.0799	92.0	2.44%	148.1	1.98%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e-1	-3.606e+00	0.0803	484.0	12.86%	883.3	11.83%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e-1	-3.601e+00	0.0804	192.0	5.10%	331.5	4.44%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e-1	-3.600e+00	0.0804	610.0	16.21%	1125.7	15.07%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e-1	-3.557e+00	0.0835	120.0	3.19%	199.3	2.67%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-1	-3.551e+00	0.0837	32.0	0.85%	44.7	0.60%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e-1	-3.540e+00	0.0844	138.0	3.67%	232.6	3.11%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e-1	-3.528e+00	0.0852	52.0	1.38%	78.3	1.05%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1	-3.502e+00	0.0871	96.0	2.55%	156.8	2.10%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-1	-3.488e+00	0.0881	496.0	13.18%	908.6	12.17%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-1	-3.482e+00	0.0883	1788.0	47.50%	3433.2	45.97%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-1	-3.470e+00	0.0891	962.0	25.56%	1810.4	24.24%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e-1	-3.467e+00	0.0891	36.0	0.96%	51.1	0.68%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-3.465e+00	0.0891	338.0	8.98%	607.7	8.14%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-1	-3.465e+00	0.0891	752.0	19.98%	1402.5	18.78%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e-1	-3.462e+00	0.0891	46.0	1.22%	68.4	0.92%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-3.451e+00	0.0894	594.0	15.78%	1097.3	14.69%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-1	-3.448e+00	0.0894	680.0	18.07%	1263.5	16.92%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e-1	-3.430e+00	0.0908	66.0	1.75%	103.7	1.39%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e-1	-3.422e+00	0.0912	510.0	13.55%	936.6	12.54%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e-1	-3.422e+00	0.0912	58.0	1.54%	89.9	1.20%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-3.348e+00	0.0976	696.0	18.49%	1296.4	17.36%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e-1	-3.343e+00	0.0978	336.0	8.93%	606.0	8.11%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-3.334e+00	0.0984	214.0	5.69%	375.6	5.03%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-3.322e+00	0.0993	720.0	19.13%	1343.1	17.98%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.309e+00	0.1003	1062.0	28.21%	2009.2	26.90%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e-1	-3.289e+00	0.1020	94.0	2.50%	154.4	2.07%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-3.254e+00	0.1054	2776.0	73.75%	5411.9	72.46%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-1	-3.251e+00	0.1054	112.0	2.98%	187.9	2.52%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-3.235e+00	0.1067	240.0	6.38%	425.8	5.70%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e-1	-3.234e+00	0.1067	418.0	11.11%	763.1	10.22%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-1	-3.207e+00	0.1091	778.0	20.67%	1458.1	19.52%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e-1	-3.187e+00	0.1110	554.0	14.72%	1025.9	13.74%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-1	-3.175e+00	0.1121	154.0	4.09%	265.3	3.55%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e-1	-3.174e+00	0.1121	128.0	3.40%	217.3	2.91%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-3.174e+00	0.1121	190.0	5.05%	332.2	4.45%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e-1	-3.155e+00	0.1133	74.0	1.97%	119.3	1.60%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-3.154e+00	0.1133	142.0	3.77%	243.3	3.26%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-3.082e+00	0.1212	58.0	1.54%	91.5	1.23%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-3.069e+00	0.1224	278.0	7.39%	499.4	6.69%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e-1	-3.068e+00	0.1224	216.0	5.74%	382.8	5.12%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e-1	-3.066e+00	0.1224	192.0	5.10%	337.2	4.51%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e-1	-3.027e+00	0.1265	378.0	10.04%	690.1	9.24%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.024e+00	0.1266	1602.0	42.56%	3078.5	41.22%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e-1	-3.022e+00	0.1266	1022.0	27.15%	1938.9	25.96%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-1	-3.022e+00	0.1266	414.0	11.00%	759.2	10.17%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e-1	-3.020e+00	0.1266	544.0	14.45%	1009.3	13.51%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.009e+00	0.1270	174.0	4.62%	304.7	4.08%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-3.000e+00	0.1279	232.0	6.16%	413.8	5.54%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e-1	-2.984e+00	0.1296	422.0	11.21%	775.1	10.38%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e-1	-2.981e+00	0.1297	44.0	1.17%	67.4	0.90%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-1	-2.970e+00	0.1306	292.0	7.76%	528.0	7.07%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-1	-2.959e+00	0.1318	440.0	11.69%	810.1	10.85%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e-1	-2.958e+00	0.1318	24.0	0.64%	33.5	0.45%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-2.948e+00	0.1325	212.0	5.63%	376.5	5.04%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-1	-2.929e+00	0.1346	72.0	1.91%	117.6	1.57%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-2.927e+00	0.1346	586.0	15.57%	1092.4	14.63%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e-1	-2.908e+00	0.1368	452.0	12.01%	834.8	11.18%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-1	-2.900e+00	0.1375	416.0	11.05%	765.8	10.25%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e-1	-2.898e+00	0.1375	508.0	13.50%	942.8	12.62%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e-1	-2.891e+00	0.1380	942.0	25.03%	1785.1	23.90%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.859e+00	0.1421	464.0	12.33%	858.8	11.50%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-2.852e+00	0.1427	402.0	10.68%	739.3	9.90%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e-1	-2.842e+00	0.1437	844.0	22.42%	1595.7	21.36%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-1	-2.839e+00	0.1437	166.0	4.41%	291.2	3.90%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-2.829e+00	0.1449	1000.0	26.57%	1900.8	25.45%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e-1	-2.810e+00	0.1473	692.0	18.38%	1300.6	17.41%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e-1	-2.798e+00	0.1482	40.0	1.06%	61.4	0.82%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e-1	-2.798e+00	0.1482	40.0	1.06%	61.4	0.82%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-2.797e+00	0.1482	94.0	2.50%	158.8	2.13%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-1	-2.797e+00	0.1482	100.0	2.66%	169.1	2.26%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e-1	-2.776e+00	0.1503	370.0	9.83%	679.6	9.10%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-2.774e+00	0.1503	672.0	17.85%	1262.0	16.90%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-2.769e+00	0.1507	674.0	17.91%	1266.4	16.96%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-1	-2.761e+00	0.1515	216.0	5.74%	386.3	5.17%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e-1	-2.759e+00	0.1515	644.0	17.11%	1208.3	16.18%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e-1	-2.746e+00	0.1529	200.0	5.31%	356.1	4.77%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-2.745e+00	0.1529	414.0	11.00%	764.2	10.23%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.726e+00	0.1551	1638.0	43.52%	3158.4	42.29%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e-1	-2.720e+00	0.1557	92.0	2.44%	155.3	2.08%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e-1	-2.701e+00	0.1583	4.0	0.11%	3.0	0.04%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e-1	-2.701e+00	0.1583	112.0	2.98%	193.0	2.58%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-2.696e+00	0.1583	686.0	18.23%	1291.0	17.29%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-1	-2.684e+00	0.1599	1096.0	29.12%	2092.8	28.02%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e-1	-2.667e+00	0.1621	228.0	6.06%	410.7	5.50%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.644e+00	0.1655	282.0	7.49%	513.5	6.88%
SeqBias: CG-repeat	CGCGCGCGCG	1e-1	-2.641e+00	0.1655	222.0	5.90%	400.0	5.36%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-1	-2.605e+00	0.1712	86.0	2.28%	145.7	1.95%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e-1	-2.583e+00	0.1746	376.0	9.99%	695.0	9.30%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-1	-2.571e+00	0.1763	114.0	3.03%	197.0	2.64%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-1	-2.558e+00	0.1781	254.0	6.75%	461.4	6.18%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-1	-2.548e+00	0.1794	46.0	1.22%	73.3	0.98%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e-1	-2.546e+00	0.1794	256.0	6.80%	465.5	6.23%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e-1	-2.538e+00	0.1804	374.0	9.94%	691.7	9.26%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-1	-2.534e+00	0.1807	258.0	6.85%	469.7	6.29%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-1	-2.532e+00	0.1807	42.0	1.12%	66.1	0.88%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e-1	-2.507e+00	0.1846	972.0	25.82%	1854.5	24.83%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-2.487e+00	0.1878	548.0	14.56%	1028.3	13.77%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.480e+00	0.1888	48.0	1.28%	77.9	1.04%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-1	-2.474e+00	0.1894	100.0	2.66%	172.1	2.30%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-2.474e+00	0.1894	114.0	3.03%	198.1	2.65%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-1	-2.465e+00	0.1903	316.0	8.40%	581.2	7.78%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.462e+00	0.1904	908.0	24.12%	1730.1	23.16%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-1	-2.454e+00	0.1915	528.0	14.03%	990.4	13.26%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e-1	-2.447e+00	0.1924	54.0	1.43%	88.1	1.18%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e-1	-2.434e+00	0.1944	488.0	12.96%	913.9	12.24%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-2.416e+00	0.1975	352.0	9.35%	651.9	8.73%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e-1	-2.414e+00	0.1975	8.0	0.21%	9.2	0.12%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e-1	-2.399e+00	0.1999	238.0	6.32%	433.3	5.80%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-1	-2.398e+00	0.1999	120.0	3.19%	210.1	2.81%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-1	-2.371e+00	0.2045	68.0	1.81%	114.7	1.54%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.366e+00	0.2050	212.0	5.63%	384.5	5.15%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-1	-2.343e+00	0.2092	270.0	7.17%	495.5	6.63%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-1	-2.321e+00	0.2136	480.0	12.75%	900.4	12.06%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-1	-2.306e+00	0.2162	804.0	21.36%	1531.8	20.51%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-2.277e+00	0.2220	1070.0	28.43%	2053.6	27.50%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-2.274e+00	0.2223	86.0	2.28%	149.0	1.99%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-2.273e+00	0.2223	238.0	6.32%	435.6	5.83%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-2.263e+00	0.2237	80.0	2.13%	137.3	1.84%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-2.263e+00	0.2237	20.0	0.53%	29.2	0.39%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-2.261e+00	0.2237	168.0	4.46%	302.7	4.05%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-2.260e+00	0.2237	1368.0	36.34%	2640.4	35.35%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-2.249e+00	0.2247	710.0	18.86%	1349.4	18.07%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.240e+00	0.2257	46.0	1.22%	75.4	1.01%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-2.240e+00	0.2257	46.0	1.22%	76.0	1.02%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-2.235e+00	0.2263	24.0	0.64%	36.5	0.49%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-2.232e+00	0.2264	480.0	12.75%	902.9	12.09%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-2.229e+00	0.2266	28.0	0.74%	43.6	0.58%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-2.207e+00	0.2310	312.0	8.29%	578.2	7.74%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.200e+00	0.2322	428.0	11.37%	802.8	10.75%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-2.185e+00	0.2353	48.0	1.28%	79.6	1.07%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-2.182e+00	0.2353	434.0	11.53%	814.8	10.91%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-2.179e+00	0.2356	306.0	8.13%	567.5	7.60%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-2.179e+00	0.2356	124.0	3.29%	220.6	2.95%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-2.176e+00	0.2356	222.0	5.90%	406.3	5.44%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-2.173e+00	0.2356	142.0	3.77%	254.9	3.41%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-2.160e+00	0.2380	172.0	4.57%	311.4	4.17%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-2.159e+00	0.2380	352.0	9.35%	656.5	8.79%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.146e+00	0.2401	164.0	4.36%	296.8	3.97%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.144e+00	0.2401	416.0	11.05%	780.9	10.46%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e0	-2.134e+00	0.2419	278.0	7.39%	514.0	6.88%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-2.132e+00	0.2420	318.0	8.45%	591.5	7.92%
Tal1	CATCTG	1e0	-2.091e+00	0.2515	808.0	21.47%	1545.5	20.69%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.079e+00	0.2539	1770.0	47.02%	3441.5	46.08%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-2.074e+00	0.2548	510.0	13.55%	964.2	12.91%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-2.064e+00	0.2567	10.0	0.27%	13.3	0.18%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.046e+00	0.2609	112.0	2.98%	199.3	2.67%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.033e+00	0.2635	346.0	9.19%	647.1	8.66%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-2.029e+00	0.2642	24.0	0.64%	37.4	0.50%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-2.011e+00	0.2684	416.0	11.05%	783.9	10.50%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-2.008e+00	0.2685	820.0	21.79%	1571.5	21.04%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.005e+00	0.2687	872.0	23.17%	1673.8	22.41%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.993e+00	0.2713	736.0	19.55%	1408.0	18.85%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.975e+00	0.2757	214.0	5.69%	394.4	5.28%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-1.968e+00	0.2770	266.0	7.07%	494.1	6.62%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.966e+00	0.2770	58.0	1.54%	99.5	1.33%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.962e+00	0.2775	962.0	25.56%	1851.9	24.79%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.960e+00	0.2775	46.0	1.22%	77.5	1.04%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-1.930e+00	0.2855	276.0	7.33%	514.9	6.89%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.928e+00	0.2855	504.0	13.39%	956.9	12.81%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-1.926e+00	0.2855	4.0	0.11%	4.6	0.06%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.926e+00	0.2855	4.0	0.11%	4.6	0.06%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-1.924e+00	0.2855	6.0	0.16%	7.2	0.10%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.913e+00	0.2872	240.0	6.38%	445.7	5.97%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-1.890e+00	0.2933	140.0	3.72%	254.6	3.41%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.887e+00	0.2936	208.0	5.53%	384.2	5.14%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.878e+00	0.2955	38.0	1.01%	63.3	0.85%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-1.868e+00	0.2979	64.0	1.70%	111.8	1.50%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-1.864e+00	0.2979	114.0	3.03%	205.3	2.75%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-1.864e+00	0.2979	114.0	3.03%	205.8	2.76%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-1.863e+00	0.2979	1030.0	27.36%	1988.4	26.62%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-1.847e+00	0.3016	958.0	25.45%	1847.8	24.74%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-1.839e+00	0.3035	66.0	1.75%	115.1	1.54%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.834e+00	0.3045	82.0	2.18%	145.8	1.95%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-1.826e+00	0.3063	100.0	2.66%	179.4	2.40%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.824e+00	0.3063	150.0	3.99%	274.6	3.68%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-1.824e+00	0.3063	150.0	3.99%	274.7	3.68%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-1.805e+00	0.3108	682.0	18.12%	1307.2	17.50%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.797e+00	0.3125	382.0	10.15%	722.5	9.67%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-1.783e+00	0.3163	798.0	21.20%	1535.9	20.56%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-1.782e+00	0.3163	406.0	10.79%	769.5	10.30%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.761e+00	0.3222	238.0	6.32%	445.0	5.96%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-1.757e+00	0.3227	1120.0	29.76%	2169.7	29.05%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-1.740e+00	0.3277	464.0	12.33%	883.1	11.82%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.727e+00	0.3313	432.0	11.48%	821.3	11.00%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-1.710e+00	0.3361	366.0	9.72%	693.1	9.28%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-1.702e+00	0.3383	352.0	9.35%	666.3	8.92%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-1.698e+00	0.3387	186.0	4.94%	345.7	4.63%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.689e+00	0.3412	886.0	23.54%	1711.5	22.92%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.688e+00	0.3412	62.0	1.65%	109.3	1.46%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.684e+00	0.3417	582.0	15.46%	1115.5	14.94%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.678e+00	0.3431	278.0	7.39%	523.7	7.01%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.664e+00	0.3470	132.0	3.51%	242.5	3.25%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.664e+00	0.3470	56.0	1.49%	98.4	1.32%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-1.660e+00	0.3471	370.0	9.83%	702.3	9.40%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.656e+00	0.3480	82.0	2.18%	147.8	1.98%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-1.650e+00	0.3491	92.0	2.44%	166.9	2.23%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.648e+00	0.3494	30.0	0.80%	50.4	0.68%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.630e+00	0.3548	150.0	3.99%	277.5	3.72%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.624e+00	0.3565	510.0	13.55%	976.1	13.07%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-1.623e+00	0.3565	838.0	22.26%	1619.6	21.68%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-1.622e+00	0.3565	298.0	7.92%	563.2	7.54%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.621e+00	0.3565	408.0	10.84%	777.8	10.41%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-1.614e+00	0.3571	452.0	12.01%	863.6	11.56%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-1.603e+00	0.3602	98.0	2.60%	178.7	2.39%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.598e+00	0.3614	132.0	3.51%	243.3	3.26%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.544e+00	0.3806	260.0	6.91%	491.6	6.58%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-1.543e+00	0.3806	452.0	12.01%	865.4	11.59%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.535e+00	0.3829	50.0	1.33%	88.7	1.19%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-1.526e+00	0.3856	824.0	21.89%	1595.4	21.36%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-1.524e+00	0.3856	160.0	4.25%	298.6	4.00%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.516e+00	0.3878	162.0	4.30%	303.0	4.06%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.512e+00	0.3885	3764.0	100.00%	7465.7	99.96%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.501e+00	0.3921	180.0	4.78%	338.0	4.52%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-1.500e+00	0.3921	916.0	24.34%	1777.2	23.79%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.492e+00	0.3941	462.0	12.27%	886.6	11.87%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-1.489e+00	0.3947	420.0	11.16%	804.8	10.78%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-1.484e+00	0.3959	14.0	0.37%	22.0	0.29%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-1.470e+00	0.4007	410.0	10.89%	785.6	10.52%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-1.463e+00	0.4026	56.0	1.49%	100.2	1.34%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-1.457e+00	0.4045	76.0	2.02%	138.3	1.85%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.432e+00	0.4140	390.0	10.36%	747.5	10.01%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.411e+00	0.4217	472.0	12.54%	908.4	12.16%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-1.409e+00	0.4221	474.0	12.59%	913.0	12.22%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.406e+00	0.4224	906.0	24.07%	1761.3	23.58%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.404e+00	0.4225	120.0	3.19%	223.1	2.99%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-1.400e+00	0.4232	694.0	18.44%	1344.5	18.00%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.399e+00	0.4232	164.0	4.36%	308.7	4.13%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-1.393e+00	0.4248	370.0	9.83%	709.5	9.50%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.389e+00	0.4256	54.0	1.43%	97.0	1.30%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-1.388e+00	0.4256	252.0	6.70%	479.5	6.42%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-1.377e+00	0.4292	524.0	13.92%	1011.5	13.54%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-1.375e+00	0.4294	526.0	13.97%	1016.0	13.60%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.365e+00	0.4328	588.0	15.62%	1137.1	15.22%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-1.363e+00	0.4331	12.0	0.32%	19.7	0.26%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-1.360e+00	0.4332	304.0	8.08%	581.9	7.79%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.341e+00	0.4409	556.0	14.77%	1075.8	14.40%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-1.340e+00	0.4409	32.0	0.85%	56.3	0.75%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.337e+00	0.4410	8.0	0.21%	12.9	0.17%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-1.332e+00	0.4424	278.0	7.39%	531.4	7.11%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-1.319e+00	0.4476	98.0	2.60%	183.0	2.45%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.316e+00	0.4480	1042.0	27.68%	2033.3	27.22%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.314e+00	0.4480	670.0	17.80%	1300.1	17.41%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-1.311e+00	0.4485	34.0	0.90%	60.9	0.81%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.296e+00	0.4545	630.0	16.74%	1222.8	16.37%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.289e+00	0.4570	166.0	4.41%	314.9	4.22%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-1.289e+00	0.4570	78.0	2.07%	144.1	1.93%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-1.285e+00	0.4571	36.0	0.96%	64.0	0.86%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-1.281e+00	0.4581	56.0	1.49%	102.3	1.37%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-1.281e+00	0.4581	106.0	2.82%	198.1	2.65%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.278e+00	0.4581	330.0	8.77%	634.6	8.50%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-1.273e+00	0.4593	538.0	14.29%	1042.8	13.96%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.268e+00	0.4602	124.0	3.29%	233.1	3.12%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.268e+00	0.4602	124.0	3.29%	233.7	3.13%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-1.251e+00	0.4671	60.0	1.59%	110.4	1.48%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.250e+00	0.4671	30.0	0.80%	53.3	0.71%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.248e+00	0.4671	260.0	6.91%	498.9	6.68%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-1.234e+00	0.4728	10.0	0.27%	16.8	0.23%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-1.231e+00	0.4730	338.0	8.98%	651.8	8.73%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-1.229e+00	0.4731	152.0	4.04%	288.3	3.86%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-1.223e+00	0.4753	1262.0	33.53%	2472.9	33.11%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.223e+00	0.4753	1132.0	30.07%	2215.7	29.67%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-1.208e+00	0.4810	94.0	2.50%	176.3	2.36%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-1.202e+00	0.4827	892.0	23.70%	1742.5	23.33%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.202e+00	0.4827	44.0	1.17%	80.9	1.08%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-1.195e+00	0.4847	340.0	9.03%	656.5	8.79%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.193e+00	0.4847	6.0	0.16%	9.5	0.13%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.193e+00	0.4847	6.0	0.16%	9.8	0.13%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.190e+00	0.4847	450.0	11.96%	872.8	11.69%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-1.183e+00	0.4871	100.0	2.66%	188.4	2.52%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.181e+00	0.4871	744.0	19.77%	1451.3	19.43%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.169e+00	0.4920	48.0	1.28%	88.4	1.18%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.161e+00	0.4951	266.0	7.07%	512.3	6.86%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-1.154e+00	0.4981	548.0	14.56%	1066.3	14.28%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.152e+00	0.4981	204.0	5.42%	391.6	5.24%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.145e+00	0.5007	166.0	4.41%	317.3	4.25%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-1.142e+00	0.5011	1042.0	27.68%	2041.1	27.33%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.137e+00	0.5031	66.0	1.75%	123.9	1.66%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-1.134e+00	0.5038	132.0	3.51%	251.2	3.36%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-1.097e+00	0.5217	1328.0	35.28%	2609.8	34.94%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.097e+00	0.5217	34.0	0.90%	62.5	0.84%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.094e+00	0.5217	128.0	3.40%	244.1	3.27%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.088e+00	0.5238	600.0	15.94%	1171.7	15.69%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.086e+00	0.5242	350.0	9.30%	679.5	9.10%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.085e+00	0.5242	604.0	16.05%	1179.3	15.79%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.080e+00	0.5251	222.0	5.90%	428.6	5.74%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-1.080e+00	0.5251	542.0	14.40%	1057.8	14.16%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-1.074e+00	0.5267	16.0	0.43%	28.6	0.38%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-1.057e+00	0.5350	264.0	7.01%	511.6	6.85%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.053e+00	0.5361	86.0	2.28%	163.4	2.19%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.048e+00	0.5379	28.0	0.74%	51.9	0.69%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	-1.043e+00	0.5396	108.0	2.87%	207.0	2.77%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-1.028e+00	0.5470	94.0	2.50%	179.8	2.41%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-1.023e+00	0.5489	116.0	3.08%	222.1	2.97%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.022e+00	0.5489	60.0	1.59%	113.4	1.52%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-1.022e+00	0.5489	138.0	3.67%	265.5	3.55%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.008e+00	0.5542	3764.0	100.00%	7466.8	99.97%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.006e+00	0.5543	82.0	2.18%	156.1	2.09%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-9.993e-01	0.5573	1452.0	38.58%	2860.6	38.30%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-9.962e-01	0.5582	520.0	13.82%	1017.7	13.63%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-9.959e-01	0.5582	128.0	3.40%	246.4	3.30%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-9.941e-01	0.5582	50.0	1.33%	94.8	1.27%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-9.913e-01	0.5582	154.0	4.09%	297.5	3.98%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-9.782e-01	0.5646	438.0	11.64%	856.3	11.46%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-9.639e-01	0.5718	422.0	11.21%	825.1	11.05%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-9.581e-01	0.5742	100.0	2.66%	192.1	2.57%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-9.535e-01	0.5759	60.0	1.59%	114.3	1.53%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-9.517e-01	0.5760	476.0	12.65%	932.9	12.49%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-9.427e-01	0.5803	650.0	17.27%	1276.8	17.10%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-9.424e-01	0.5803	1156.0	30.71%	2277.5	30.49%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-9.388e-01	0.5807	6.0	0.16%	10.7	0.14%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	-9.292e-01	0.5853	326.0	8.66%	637.8	8.54%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-9.282e-01	0.5853	228.0	6.06%	444.3	5.95%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-9.257e-01	0.5855	142.0	3.77%	275.5	3.69%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-9.115e-01	0.5920	74.0	1.97%	142.3	1.90%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-9.115e-01	0.5920	74.0	1.97%	142.3	1.90%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-9.043e-01	0.5953	286.0	7.60%	559.7	7.49%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-8.983e-01	0.5979	132.0	3.51%	256.5	3.43%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-8.970e-01	0.5979	80.0	2.13%	154.0	2.06%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-8.861e-01	0.6033	966.0	25.66%	1904.4	25.50%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-8.839e-01	0.6037	22.0	0.58%	41.0	0.55%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-8.695e-01	0.6115	44.0	1.17%	84.3	1.13%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-8.678e-01	0.6116	68.0	1.81%	131.5	1.76%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-8.669e-01	0.6116	296.0	7.86%	580.5	7.77%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-8.663e-01	0.6116	458.0	12.17%	900.7	12.06%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-8.633e-01	0.6116	70.0	1.86%	135.6	1.82%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-8.578e-01	0.6138	270.0	7.17%	529.3	7.09%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-8.509e-01	0.6171	28.0	0.74%	53.8	0.72%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-8.474e-01	0.6183	208.0	5.53%	407.7	5.46%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-8.410e-01	0.6213	12.0	0.32%	22.3	0.30%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-8.344e-01	0.6245	32.0	0.85%	61.5	0.82%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-8.277e-01	0.6277	630.0	16.74%	1242.1	16.63%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-8.218e-01	0.6304	548.0	14.56%	1080.6	14.47%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-8.212e-01	0.6304	456.0	12.11%	899.0	12.04%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-8.204e-01	0.6304	324.0	8.61%	637.6	8.54%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-8.197e-01	0.6304	202.0	5.37%	396.0	5.30%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-8.172e-01	0.6304	130.0	3.45%	254.1	3.40%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-8.158e-01	0.6304	168.0	4.46%	329.3	4.41%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-8.145e-01	0.6304	66.0	1.75%	128.9	1.73%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-8.115e-01	0.6304	212.0	5.63%	416.1	5.57%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-8.106e-01	0.6304	574.0	15.25%	1132.9	15.17%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-8.089e-01	0.6304	40.0	1.06%	77.4	1.04%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-8.086e-01	0.6304	300.0	7.97%	590.2	7.90%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-8.069e-01	0.6304	2.0	0.05%	3.5	0.05%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-8.021e-01	0.6312	696.0	18.49%	1375.0	18.41%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.963e-01	0.6338	112.0	2.98%	219.3	2.94%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-7.928e-01	0.6351	568.0	15.09%	1121.5	15.02%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-7.908e-01	0.6354	156.0	4.14%	306.6	4.10%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-7.873e-01	0.6367	160.0	4.25%	314.2	4.21%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-7.750e-01	0.6436	460.0	12.22%	908.1	12.16%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-7.706e-01	0.6455	226.0	6.00%	445.4	5.96%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-7.629e-01	0.6494	386.0	10.26%	762.9	10.21%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-7.598e-01	0.6505	550.0	14.61%	1087.5	14.56%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-7.491e-01	0.6565	1032.0	27.42%	2043.0	27.35%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-7.422e-01	0.6600	1176.0	31.24%	2329.8	31.19%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-7.389e-01	0.6612	130.0	3.45%	256.6	3.44%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-7.357e-01	0.6624	42.0	1.12%	82.5	1.10%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-7.195e-01	0.6722	54.0	1.43%	106.8	1.43%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-7.184e-01	0.6722	734.0	19.50%	1454.7	19.48%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-7.136e-01	0.6741	632.0	16.79%	1252.6	16.77%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-7.129e-01	0.6741	60.0	1.59%	118.0	1.58%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-7.116e-01	0.6741	402.0	10.68%	796.2	10.66%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-7.071e-01	0.6755	66.0	1.75%	130.6	1.75%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-7.044e-01	0.6763	724.0	19.23%	1435.3	19.22%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.980e-01	0.6796	18.0	0.48%	35.5	0.48%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-6.948e-01	0.6808	20.0	0.53%	39.9	0.53%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-6.921e-01	0.6816	334.0	8.87%	662.1	8.86%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-6.847e-01	0.6857	28.0	0.74%	55.3	0.74%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-6.817e-01	0.6868	428.0	11.37%	849.9	11.38%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-6.773e-01	0.6888	442.0	11.74%	877.7	11.75%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.753e-01	0.6891	112.0	2.98%	222.9	2.98%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-6.748e-01	0.6891	318.0	8.45%	631.7	8.46%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-6.692e-01	0.6913	196.0	5.21%	389.9	5.22%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.623e-01	0.6951	628.0	16.68%	1247.8	16.71%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-6.550e-01	0.6991	234.0	6.22%	465.9	6.24%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-6.491e-01	0.7023	84.0	2.23%	167.2	2.24%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-6.458e-01	0.7036	92.0	2.44%	183.9	2.46%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-6.302e-01	0.7136	316.0	8.40%	629.3	8.43%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.293e-01	0.7136	234.0	6.22%	466.7	6.25%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-6.290e-01	0.7136	140.0	3.72%	279.5	3.74%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-6.277e-01	0.7136	144.0	3.83%	287.2	3.84%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-6.260e-01	0.7136	150.0	3.99%	299.0	4.00%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-6.250e-01	0.7136	336.0	8.93%	669.6	8.97%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-6.124e-01	0.7202	30.0	0.80%	60.8	0.81%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-6.085e-01	0.7219	80.0	2.13%	160.5	2.15%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-6.048e-01	0.7236	422.0	11.21%	841.6	11.27%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-6.026e-01	0.7241	112.0	2.98%	224.4	3.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.937e-01	0.7295	10.0	0.27%	20.7	0.28%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-5.867e-01	0.7336	8.0	0.21%	16.2	0.22%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-5.841e-01	0.7344	1682.0	44.69%	3346.0	44.80%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-5.837e-01	0.7344	776.0	20.62%	1546.6	20.71%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-5.803e-01	0.7352	632.0	16.79%	1260.1	16.87%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-5.735e-01	0.7391	670.0	17.80%	1336.8	17.90%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.658e-01	0.7437	62.0	1.65%	125.3	1.68%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-5.630e-01	0.7448	180.0	4.78%	361.0	4.83%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-5.610e-01	0.7453	656.0	17.43%	1309.4	17.53%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-5.495e-01	0.7527	536.0	14.24%	1071.1	14.34%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.469e-01	0.7537	444.0	11.80%	888.1	11.89%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-5.444e-01	0.7545	570.0	15.14%	1139.7	15.26%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-5.427e-01	0.7547	344.0	9.14%	689.6	9.23%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-5.351e-01	0.7594	216.0	5.74%	434.1	5.81%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-5.286e-01	0.7633	296.0	7.86%	594.0	7.95%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-5.282e-01	0.7633	74.0	1.97%	150.1	2.01%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-5.238e-01	0.7648	808.0	21.47%	1614.3	21.61%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-5.135e-01	0.7706	2.0	0.05%	4.3	0.06%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-5.135e-01	0.7706	2.0	0.05%	4.9	0.07%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.099e-01	0.7723	144.0	3.83%	291.7	3.91%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.070e-01	0.7734	1474.0	39.16%	2939.2	39.35%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-5.056e-01	0.7734	516.0	13.71%	1034.3	13.85%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-5.041e-01	0.7734	3764.0	100.00%	7468.8	100.00%
 Ik-1	NHTTGGGAATRCC	1e0	-5.041e-01	0.7734	3764.0	100.00%	7468.8	100.00%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-4.985e-01	0.7757	430.0	11.42%	863.1	11.56%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-4.967e-01	0.7760	86.0	2.28%	175.8	2.35%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-4.863e-01	0.7830	560.0	14.88%	1123.9	15.05%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-4.857e-01	0.7830	66.0	1.75%	136.0	1.82%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.851e-01	0.7830	28.0	0.74%	58.8	0.79%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-4.798e-01	0.7849	128.0	3.40%	260.3	3.49%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.775e-01	0.7857	496.0	13.18%	996.6	13.34%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-4.768e-01	0.7857	504.0	13.39%	1012.1	13.55%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-4.767e-01	0.7857	884.0	23.49%	1769.7	23.69%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-4.732e-01	0.7858	692.0	18.38%	1387.4	18.58%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-4.709e-01	0.7858	50.0	1.33%	103.7	1.39%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.709e-01	0.7858	50.0	1.33%	103.7	1.39%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-4.677e-01	0.7869	94.0	2.50%	192.0	2.57%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-4.640e-01	0.7887	892.0	23.70%	1786.6	23.92%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.484e-01	0.8000	116.0	3.08%	237.5	3.18%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-4.482e-01	0.8000	502.0	13.34%	1010.2	13.52%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-4.450e-01	0.8006	196.0	5.21%	398.5	5.34%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-4.440e-01	0.8006	190.0	5.05%	386.9	5.18%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-4.370e-01	0.8048	404.0	10.73%	815.3	10.92%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-4.165e-01	0.8204	42.0	1.12%	88.3	1.18%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.163e-01	0.8204	164.0	4.36%	335.7	4.49%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-4.124e-01	0.8215	152.0	4.04%	311.4	4.17%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-4.067e-01	0.8251	60.0	1.59%	125.6	1.68%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.049e-01	0.8255	200.0	5.31%	408.2	5.47%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-4.012e-01	0.8263	56.0	1.49%	117.7	1.58%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-4.012e-01	0.8263	56.0	1.49%	117.8	1.58%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-3.932e-01	0.8319	584.0	15.52%	1178.3	15.78%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-3.899e-01	0.8336	678.0	18.01%	1366.4	18.29%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-3.886e-01	0.8336	148.0	3.93%	304.3	4.07%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.870e-01	0.8337	30.0	0.80%	64.3	0.86%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-3.805e-01	0.8380	620.0	16.47%	1251.1	16.75%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-3.794e-01	0.8380	92.0	2.44%	191.7	2.57%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-3.786e-01	0.8380	16.0	0.43%	35.5	0.48%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-3.759e-01	0.8386	348.0	9.25%	707.9	9.48%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-3.700e-01	0.8424	154.0	4.09%	317.8	4.25%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-3.698e-01	0.8424	580.0	15.41%	1173.0	15.71%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-3.651e-01	0.8443	24.0	0.64%	52.9	0.71%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-3.619e-01	0.8459	248.0	6.59%	507.9	6.80%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-3.572e-01	0.8488	678.0	18.01%	1369.8	18.34%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-3.535e-01	0.8508	794.0	21.09%	1601.9	21.45%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-3.524e-01	0.8508	48.0	1.28%	102.3	1.37%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-3.515e-01	0.8508	120.0	3.19%	249.5	3.34%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-3.441e-01	0.8555	460.0	12.22%	934.5	12.51%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-3.396e-01	0.8582	104.0	2.76%	217.4	2.91%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-3.309e-01	0.8646	72.0	1.91%	152.2	2.04%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-3.287e-01	0.8654	38.0	1.01%	83.0	1.11%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-3.275e-01	0.8654	26.0	0.69%	57.0	0.76%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.165e-01	0.8737	252.0	6.70%	518.1	6.94%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.135e-01	0.8752	126.0	3.35%	263.6	3.53%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-3.114e-01	0.8758	234.0	6.22%	482.1	6.45%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-3.106e-01	0.8758	122.0	3.24%	255.8	3.42%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-3.049e-01	0.8793	214.0	5.69%	442.7	5.93%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-2.956e-01	0.8863	66.0	1.75%	141.9	1.90%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.879e-01	0.8920	12.0	0.32%	28.3	0.38%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-2.856e-01	0.8930	18.0	0.48%	41.8	0.56%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-2.716e-01	0.9044	16.0	0.43%	37.7	0.50%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.656e-01	0.9087	368.0	9.78%	756.8	10.13%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-2.648e-01	0.9087	94.0	2.50%	200.3	2.68%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-2.622e-01	0.9094	504.0	13.39%	1030.1	13.79%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-2.580e-01	0.9121	386.0	10.26%	793.7	10.63%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.483e-01	0.9198	54.0	1.43%	118.6	1.59%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-2.405e-01	0.9258	62.0	1.65%	135.3	1.81%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-2.404e-01	0.9258	196.0	5.21%	410.4	5.49%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-2.403e-01	0.9258	24.0	0.64%	55.1	0.74%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.394e-01	0.9258	40.0	1.06%	89.2	1.19%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.316e-01	0.9293	98.0	2.60%	210.2	2.81%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-2.286e-01	0.9309	16.0	0.43%	38.1	0.51%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.282e-01	0.9309	518.0	13.76%	1062.6	14.23%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.271e-01	0.9309	94.0	2.50%	202.8	2.71%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-2.265e-01	0.9309	432.0	11.48%	889.3	11.91%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-2.168e-01	0.9372	134.0	3.56%	285.3	3.82%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.113e-01	0.9412	166.0	4.41%	351.4	4.70%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-2.065e-01	0.9446	780.0	20.72%	1591.1	21.30%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.057e-01	0.9446	18.0	0.48%	43.4	0.58%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.057e-01	0.9446	18.0	0.48%	43.8	0.59%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-2.057e-01	0.9446	18.0	0.48%	43.7	0.58%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-2.051e-01	0.9446	200.0	5.31%	421.6	5.64%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-2.036e-01	0.9446	450.0	11.96%	928.8	12.44%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-1.964e-01	0.9470	258.0	6.85%	540.9	7.24%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.952e-01	0.9470	42.0	1.12%	95.3	1.28%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-1.940e-01	0.9470	34.0	0.90%	78.6	1.05%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.940e-01	0.9470	34.0	0.90%	78.0	1.04%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-1.917e-01	0.9470	730.0	19.39%	1493.5	20.00%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-1.898e-01	0.9474	192.0	5.10%	407.0	5.45%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-1.895e-01	0.9474	40.0	1.06%	91.2	1.22%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.884e-01	0.9474	8.0	0.21%	21.4	0.29%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.857e-01	0.9477	488.0	12.96%	1007.1	13.48%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.840e-01	0.9481	382.0	10.15%	793.6	10.63%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-1.837e-01	0.9481	250.0	6.64%	525.3	7.03%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.813e-01	0.9484	84.0	2.23%	184.1	2.47%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.793e-01	0.9491	324.0	8.61%	676.8	9.06%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-1.789e-01	0.9491	172.0	4.57%	366.3	4.90%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.764e-01	0.9495	1404.0	37.30%	2843.7	38.07%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.740e-01	0.9506	50.0	1.33%	113.5	1.52%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.734e-01	0.9506	18.0	0.48%	44.5	0.60%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-1.710e-01	0.9511	218.0	5.79%	461.5	6.18%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-1.706e-01	0.9511	196.0	5.21%	416.4	5.57%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.701e-01	0.9511	76.0	2.02%	168.3	2.25%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-1.689e-01	0.9511	86.0	2.28%	189.1	2.53%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.645e-01	0.9526	94.0	2.50%	206.1	2.76%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.644e-01	0.9526	46.0	1.22%	105.5	1.41%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-1.626e-01	0.9526	26.0	0.69%	62.9	0.84%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-1.621e-01	0.9526	38.0	1.01%	88.1	1.18%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-1.598e-01	0.9526	90.0	2.39%	198.3	2.65%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-1.498e-01	0.9609	254.0	6.75%	537.9	7.20%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.490e-01	0.9609	92.0	2.44%	203.3	2.72%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-1.459e-01	0.9623	488.0	12.96%	1013.2	13.57%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.425e-01	0.9645	2.0	0.05%	7.7	0.10%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-1.385e-01	0.9672	74.0	1.97%	166.5	2.23%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-1.360e-01	0.9684	238.0	6.32%	506.9	6.79%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-1.331e-01	0.9701	20.0	0.53%	50.6	0.68%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-1.253e-01	0.9765	92.0	2.44%	205.5	2.75%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.242e-01	0.9765	494.0	13.12%	1029.0	13.78%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.241e-01	0.9765	50.0	1.33%	116.4	1.56%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.212e-01	0.9770	376.0	9.99%	790.1	10.58%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-1.168e-01	0.9802	330.0	8.77%	697.9	9.34%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.144e-01	0.9813	4.0	0.11%	13.3	0.18%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-1.129e-01	0.9816	234.0	6.22%	501.7	6.72%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-1.096e-01	0.9837	926.0	24.60%	1903.5	25.49%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.095e-01	0.9837	10.0	0.27%	28.0	0.38%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-1.038e-01	0.9870	110.0	2.92%	245.0	3.28%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.030e-01	0.9870	22.0	0.58%	56.6	0.76%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.023e-01	0.9870	240.0	6.38%	515.8	6.91%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-9.753e-02	0.9886	56.0	1.49%	131.8	1.76%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-9.753e-02	0.9886	56.0	1.49%	131.3	1.76%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-9.336e-02	0.9915	2.0	0.05%	8.0	0.11%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-9.332e-02	0.9915	74.0	1.97%	170.8	2.29%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-9.029e-02	0.9922	16.0	0.43%	43.3	0.58%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-8.744e-02	0.9939	26.0	0.69%	66.6	0.89%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-8.045e-02	0.9997	78.0	2.07%	180.4	2.42%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-8.016e-02	0.9997	52.0	1.38%	124.1	1.66%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-7.825e-02	0.9997	20.0	0.53%	53.6	0.72%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	-7.778e-02	0.9997	156.0	4.14%	345.3	4.62%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-7.497e-02	1.0000	614.0	16.31%	1284.3	17.20%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-7.344e-02	1.0000	86.0	2.28%	198.9	2.66%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-7.146e-02	1.0000	84.0	2.23%	195.0	2.61%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-6.969e-02	1.0000	162.0	4.30%	359.2	4.81%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-6.684e-02	1.0000	178.0	4.73%	393.2	5.27%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-6.431e-02	1.0000	48.0	1.28%	117.6	1.57%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-6.104e-02	1.0000	2.0	0.05%	9.2	0.12%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-6.095e-02	1.0000	46.0	1.22%	113.4	1.52%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-5.586e-02	1.0000	88.0	2.34%	205.1	2.75%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-5.562e-02	1.0000	530.0	14.08%	1120.8	15.01%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-5.538e-02	1.0000	334.0	8.87%	719.0	9.63%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.388e-02	1.0000	140.0	3.72%	316.9	4.24%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-5.221e-02	1.0000	8.0	0.21%	26.9	0.36%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-5.105e-02	1.0000	126.0	3.35%	287.8	3.85%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-4.934e-02	1.0000	48.0	1.28%	119.7	1.60%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-4.884e-02	1.0000	488.0	12.96%	1037.9	13.90%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-4.859e-02	1.0000	156.0	4.14%	351.1	4.70%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.134e-02	1.0000	12.0	0.32%	37.4	0.50%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-4.049e-02	1.0000	38.0	1.01%	98.9	1.32%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-3.966e-02	1.0000	152.0	4.04%	345.8	4.63%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-3.966e-02	1.0000	8.0	0.21%	27.6	0.37%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.679e-02	1.0000	66.0	1.75%	161.3	2.16%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-3.520e-02	1.0000	184.0	4.89%	414.2	5.55%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-3.483e-02	1.0000	234.0	6.22%	519.8	6.96%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-3.389e-02	1.0000	58.0	1.54%	144.9	1.94%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-3.191e-02	1.0000	118.0	3.13%	275.5	3.69%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-2.942e-02	1.0000	106.0	2.82%	250.0	3.35%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.676e-02	1.0000	172.0	4.57%	392.5	5.25%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.563e-02	1.0000	14.0	0.37%	45.0	0.60%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-2.535e-02	1.0000	12.0	0.32%	39.6	0.53%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-2.340e-02	1.0000	1578.0	41.92%	3250.3	43.52%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.255e-02	1.0000	46.0	1.22%	120.5	1.61%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-2.255e-02	1.0000	46.0	1.22%	120.3	1.61%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-2.249e-02	1.0000	62.0	1.65%	156.4	2.09%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.192e-02	1.0000	154.0	4.09%	356.5	4.77%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.192e-02	1.0000	154.0	4.09%	356.5	4.77%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.132e-02	1.0000	280.0	7.44%	622.3	8.33%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.027e-02	1.0000	4.0	0.11%	18.7	0.25%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-1.954e-02	1.0000	80.0	2.13%	197.9	2.65%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.705e-02	1.0000	156.0	4.14%	363.9	4.87%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.673e-02	1.0000	2.0	0.05%	12.9	0.17%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-1.561e-02	1.0000	112.0	2.98%	269.7	3.61%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.513e-02	1.0000	44.0	1.17%	118.9	1.59%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.508e-02	1.0000	262.0	6.96%	589.4	7.89%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-1.480e-02	1.0000	3762.0	99.95%	7468.8	100.00%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.428e-02	1.0000	788.0	20.94%	1673.6	22.41%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-1.317e-02	1.0000	126.0	3.35%	301.4	4.04%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-8.974e-03	1.0000	12.0	0.32%	43.7	0.58%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-8.159e-03	1.0000	20.0	0.53%	64.5	0.86%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-7.825e-03	1.0000	44.0	1.17%	122.5	1.64%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-6.307e-03	1.0000	28.0	0.74%	85.1	1.14%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-6.255e-03	1.0000	62.0	1.65%	165.0	2.21%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-3.348e-03	1.0000	260.0	6.91%	603.7	8.08%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-2.887e-03	1.0000	182.0	4.84%	437.6	5.86%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-1.648e-03	1.0000	12.0	0.32%	49.6	0.66%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-1.420e-03	1.0000	4.0	0.11%	25.2	0.34%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-6.980e-04	1.0000	10.0	0.27%	46.5	0.62%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-4.900e-05	1.0000	190.0	5.05%	489.6	6.56%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.800e-05	1.0000	116.0	3.08%	321.5	4.31%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	7.7	0.10%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	4.6	0.06%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	1.9	0.02%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	0.000e+00	1.0000	0.0	0.00%	5.0	0.07%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	0.000e+00	1.0000	0.0	0.00%	3.6	0.05%