Information for 3-CGGGATGTTC (Motif 8)


Reverse Opposite:

p-value:1e-2
log p-value:-4.855e+00
Information Content per bp:1.878
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.28%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets29.3 +/- 7.3bp
Average Position of motif in Background13.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ROX1(MacIsaac)/Yeast

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CGGGATGTTC
GCGGGCTTNT-

dl/dmmpmm(Papatsenko)/fly

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CGGGATGTTC-
-GGGATTTCCC

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CGGGATGTTC-
-GGGGATTTCC

dl-A/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGGGATGTTC--
-GGGTTTTTCCN

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CGGGATGTTC-
-GGGAATTTCC

Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CGGGATGTTC--
CGGGKTTTTCCC

dl/MA0022.1/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGGGATGTTC--
GGGGTTTTTCCC

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CGGGATGTTC
ANCAGGATGT--

RELA/MA0107.1/Jaspar

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGGGATGTTC-
-GGGAATTTCC

PUT3/MA0358.1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGGGATGTTC
CCCGGGAA----