Information for 3-CAGCCCCCTKCC (Motif 7)


Reverse Opposite:

p-value:1e-2
log p-value:-5.143e+00
Information Content per bp:1.822
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets28.3 +/- 9.0bp
Average Position of motif in Background29.6 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0076.1_Sp4_1/Jaspar

Match Rank:1
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CAGCCCCCTKCC-
GGTCCCGCCCCCTTCTC

INSM1/MA0155.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CAGCCCCCTKCC-
-CGCCCCCTGACA

MSN4(MacIsaac)/Yeast

Match Rank:3
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CAGCCCCCTKCC
---CCCCCTT--

MSN4/Literature(Harbison)/Yeast

Match Rank:4
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CAGCCCCCTKCC
---NCCCCTG--

SP2/MA0516.1/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CAGCCCCCTKCC
GCCCCGCCCCCTCCC

RGM1/MA0366.1/Jaspar

Match Rank:6
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:CAGCCCCCTKCC
----CCCCT---

MSN4/MA0342.1/Jaspar

Match Rank:7
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:CAGCCCCCTKCC
----CCCCT---

PB0097.1_Zfp281_1/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CAGCCCCCTKCC
TCCCCCCCCCCCCCC-

btd/MA0443.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCCCCTKCC
TCCGCCCCCT---

MSN2(MacIsaac)/Yeast

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CAGCCCCCTKCC
---GCCCCTT--