Information for 2-AGACGAAT (Motif 6)


Reverse Opposite:

p-value:1e-2
log p-value:-5.729e+00
Information Content per bp:1.802
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets29.5 +/- 8.2bp
Average Position of motif in Background32.2 +/- 16.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Deaf1/dmmpmm(Pollard)/fly

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:AGACGAAT
-CACGAA-

Deaf1/MA0185.1/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:AGACGAAT
-CACGAA-

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAAT
RAAGAMGAMG

UPC2/MA0411.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGACGAAT
TATACGA--

SPIB/MA0081.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGACGAAT
AGAGGAA-

KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGACGAAT----
--ARGAATAWWN

PH0107.1_Msx2/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGACGAAT-------
GAAGACCAATTAGCGCT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGACGAAT
CCAGACRSVB

PB0108.1_Atf1_2/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGACGAAT---
GAATGACGAATAAC

KAN1/MA1027.1/Jaspar

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AGACGAAT----
----GAATATNT