Information for 1-CCGCATCC (Motif 5)


Reverse Opposite:

p-value:1e-2
log p-value:-6.007e+00
Information Content per bp:1.832
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif2.03%
Number of Background Sequences with motif25.4
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets31.6 +/- 11.5bp
Average Position of motif in Background33.6 +/- 15.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CCGCATCC---
ACCACATCCTGT

gcm/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CCGCATCC
ACCCGCAT--

GCM2/MA0767.1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CCGCATCC
TACCCGCATN-

PB0024.1_Gcm1_1/Jaspar

Match Rank:4
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------CCGCATCC--
TCGTACCCGCATCATT

FUS3/MA0565.1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCGCATCC-
GCGCATGCG

DOT6/MA0351.1/Jaspar

Match Rank:6
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------CCGCATCC------
TTCTGCACCTCATCGCATCCT

gcm2/MA0917.1/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCGCATCC
ACCCGCAT--

TOD6/MA0350.1/Jaspar

Match Rank:8
Score:0.67
Offset:-7
Orientation:forward strand
Alignment:-------CCGCATCC------
AGGCACAGCTCATCGCGTTTT

TOD6?/SacCer-Promoters/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCGCATCC-
AKCTCATCGC

GCM1/MA0646.1/Jaspar

Match Rank:10
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CCGCATCC
GTACCCGCATN-