Information for 2-AGGAGGGTCG (Motif 4)


Reverse Opposite:

p-value:1e-2
log p-value:-6.182e+00
Information Content per bp:1.785
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets26.9 +/- 5.0bp
Average Position of motif in Background20.7 +/- 11.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NRG1/NRG1_H2O2Hi/[](Harbison)/Yeast

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:AGGAGGGTCG
---AGGGTCC

NRG1(MacIsaac)/Yeast

Match Rank:2
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:AGGAGGGTCG
---AGGGTCC

PB0137.1_Irf3_2/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGGAGGGTCG--
GGAGAAAGGTGCGA

PB0025.1_Glis2_1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AGGAGGGTCG---
NTNTGGGGGGTCNNNA

NRG1/MA0347.1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGGAGGGTCG------
CTAGATCAGGGTCCATCGCA

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGAGGGTCG
TGGGGAAGGGCM

RGM1/MA0366.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AGGAGGGTCG
---AGGGG--

SP1/MA0079.3/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGGAGGGTCG
GGGGGCGGGGC-

SP2/MA0516.1/Jaspar

Match Rank:9
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------AGGAGGGTCG
GGGNGGGGGCGGGGC-

GLI2/MA0734.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGGAGGGTCG-
CAGTGTGGTCGC