Information for 2-GACCACGGCGCG (Motif 3)


Reverse Opposite:

p-value:1e-2
log p-value:-6.381e+00
Information Content per bp:1.785
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets28.4 +/- 5.8bp
Average Position of motif in Background25.7 +/- 10.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0009.1_E2F3_1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GACCACGGCGCG----
-ATAAGGGCGCGCGAT

RSC3/MA0374.1/Jaspar

Match Rank:2
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:GACCACGGCGCG
-----NNGCGCG

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GACCACGGCGCG----
-ATAAAGGCGCGCGAT

RSC30/MA0375.1/Jaspar

Match Rank:4
Score:0.68
Offset:6
Orientation:reverse strand
Alignment:GACCACGGCGCG--
------CGCGCGCG

DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer

Match Rank:5
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:GACCACGGCGCG---
-------GCGCGCTA

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:GACCACGGCGCG--
------GGCGCGCT

SUT1?/SacCer-Promoters/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GACCACGGCGCG
---CCCCGCGC-

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GACCACGGCGCG--
NNGCNCTGCGCGGC

FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GACCACGGCGCG----
----NAVGCGCGTGDD

PB0200.1_Zfp187_2/Jaspar

Match Rank:10
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GACCACGGCGCG
NNAGGGACAAGGGCNC-