Information for 1-TGCACTTTCC (Motif 2)


Reverse Opposite:

p-value:1e-3
log p-value:-6.939e+00
Information Content per bp:1.861
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets29.4 +/- 2.6bp
Average Position of motif in Background35.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

dl/dmmpmm(Down)/fly

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGCACTTTCC
TGGATTTTCC

IRF2/MA0051.1/Jaspar

Match Rank:2
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------TGCACTTTCC
GTTTTGCTTTCACTTTCC

byn/dmmpmm(Pollard)/fly

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TGCACTTTCC
TCGCACTT---

NFATC1/MA0624.1/Jaspar

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TGCACTTTCC---
---ATTTTCCATT

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGCACTTTCC
GGGAATTTCC

NFATC3/MA0625.1/Jaspar

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TGCACTTTCC---
---ATTTTCCATT

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TGCACTTTCC--
NNATTGGACTTTNGNN

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:TGCACTTTCC
GGGGATTTCC

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGCACTTTCC
ACTTTCACTTTC-

PB0146.1_Mafk_2/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGCACTTTCC--
CCTTGCAATTTTTNN