Information for 5-TCTCTGTG (Motif 14)


Reverse Opposite:

p-value:1e-1
log p-value:-3.423e+00
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.37%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets30.9 +/- 5.1bp
Average Position of motif in Background35.6 +/- 8.4bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MET28/MA0332.1/Jaspar

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:TCTCTGTG-
---CTGTGG

MET28(MacIsaac)/Yeast

Match Rank:2
Score:0.72
Offset:3
Orientation:forward strand
Alignment:TCTCTGTG-
---CTGTGG

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TCTCTGTG-
CTCTCTCTCY

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:forward strand
Alignment:TCTCTGTG
--GCTGTG

PDR8/MA0354.1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TCTCTGTG
ATCTCCGN-

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TCTCTGTG----
-GTCTGTGGTTT

PB0139.1_Irf5_2/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TCTCTGTG--
NNAATTCTCGNTNAN

PB0140.1_Irf6_2/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TCTCTGTG--
ACCACTCTCGGTCAC

SOX10/MA0442.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TCTCTGTG
-CTTTGT-

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TCTCTGTG
CTCTCTCY-