Information for 5-CCTGGCAAAG (Motif 13)


Reverse Opposite:

p-value:1e-1
log p-value:-3.843e+00
Information Content per bp:1.695
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif7.1
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets31.0 +/- 10.9bp
Average Position of motif in Background32.7 +/- 17.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CCTGGCAAAG
CTTGGCAA--

RIM101/Literature(Harbison)/Yeast

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCTGGCAAAG
CTTGGCA---

RIM101(MacIsaac)/Yeast

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCTGGCAAAG
CTTGGCA---

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCTGGCAAAG
GCTGTCAA--

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCTGGCAAAG--
TACCATAGCAACGGT

NSI1/MA0421.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCTGGCAAAG
GCCGGGTAAA-

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCTGGCAAAG
CSTGGGAAAD

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCTGGCAAAG-
SCCTAGCAACAG

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCTGGCAAAG-
AAAGACCTGTCAATCC

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCTGGCAAAG
NTTGGCANN-