Information for 5-CCCGCGCGCCGC (Motif 12)


Reverse Opposite:

p-value:1e-1
log p-value:-3.953e+00
Information Content per bp:1.880
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets29.6 +/- 9.6bp
Average Position of motif in Background33.5 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ERF109/MA1053.1/Jaspar

Match Rank:1
Score:0.71
Offset:5
Orientation:forward strand
Alignment:CCCGCGCGCCGC-
-----GCGCCGCC

RAP2-10/MA0980.1/Jaspar

Match Rank:2
Score:0.71
Offset:5
Orientation:forward strand
Alignment:CCCGCGCGCCGC-
-----GCGCCGCC

RAP2-6/MA1052.1/Jaspar

Match Rank:3
Score:0.70
Offset:5
Orientation:forward strand
Alignment:CCCGCGCGCCGC-
-----GCGCCGCC

RAP2-3/MA1051.1/Jaspar

Match Rank:4
Score:0.70
Offset:5
Orientation:forward strand
Alignment:CCCGCGCGCCGC-
-----GCGCCGCC

SUT1?/SacCer-Promoters/Homer

Match Rank:5
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCCGCGCGCCGC
-CCCCGCGC---

RSC30/MA0375.1/Jaspar

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CCCGCGCGCCGC
CGCGCGCG----

CRF4/MA0976.1/Jaspar

Match Rank:7
Score:0.69
Offset:5
Orientation:forward strand
Alignment:CCCGCGCGCCGC-
-----GCGCCGCC

STP1(MacIsaac)/Yeast

Match Rank:8
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:CCCGCGCGCCGC-
-----GCGCCGCA

CRF2/MA0975.1/Jaspar

Match Rank:9
Score:0.68
Offset:5
Orientation:forward strand
Alignment:CCCGCGCGCCGC-
-----CCGCCGCC

STP1/MA0394.1/Jaspar

Match Rank:10
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CCCGCGCGCCGC-
-----GCGCCGCA