Information for 1-CCCCCCGGGGGC (Motif 1)


Reverse Opposite:

p-value:1e-3
log p-value:-7.211e+00
Information Content per bp:1.795
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif0.89%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets30.1 +/- 5.4bp
Average Position of motif in Background34.1 +/- 7.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0101.1_Zic1_1/Jaspar

Match Rank:1
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-CCCCCCGGGGGC-
CCCCCCCGGGGGNN

PB0103.1_Zic3_1/Jaspar

Match Rank:2
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--CCCCCCGGGGGC-
NCCCCCCCGGGGGGN

PB0102.1_Zic2_1/Jaspar

Match Rank:3
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--CCCCCCGGGGGC-
ACCCCCCCGGGGGGN

PB0204.1_Zfp740_2/Jaspar

Match Rank:4
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CCCCCCGGGGGC
AAATTCCCCCCGGAAGT

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCCCCCGGGGGC
TCCCCTGGGGAC

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CCCCCCGGGGGC-------
GCCASCAGGGGGCGCYVNNG

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CCCCCCGGGGGC-
TGCCCNNAGGGCA

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCCCCCGGGGGC-
TGCCCTGAGGGCA

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCCCCCGGGGGC-
TGCCCTGAGGGCA

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCCCCCGGGGGC--
NCNCAGCGGGGGGTC