Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2460)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 2459)	% of Background Sequences with Motif
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-2	-6.190e+00	0.7933	245.0	9.96%	187.4	7.62%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-2	-5.886e+00	0.7933	149.0	6.06%	105.3	4.28%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-5.582e+00	0.7933	198.0	8.05%	149.7	6.09%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-5.546e+00	0.7933	235.0	9.56%	182.7	7.43%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.303e+00	0.7933	178.0	7.24%	133.2	5.42%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-2	-5.208e+00	0.7933	72.0	2.93%	44.5	1.81%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-5.016e+00	0.7933	239.0	9.72%	189.1	7.69%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-2	-4.915e+00	0.7933	88.0	3.58%	58.9	2.39%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-2	-4.726e+00	0.7933	172.0	6.99%	131.2	5.34%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-4.595e+00	0.7933	170.0	6.91%	130.2	5.29%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-4.281e+00	0.7933	188.0	7.65%	148.4	6.04%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1	-4.233e+00	0.7933	69.0	2.81%	45.7	1.86%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-4.151e+00	0.7933	89.0	3.62%	62.8	2.55%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-1	-4.078e+00	0.7933	51.0	2.07%	31.2	1.27%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-3.931e+00	0.7933	76.0	3.09%	52.8	2.15%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1	-3.909e+00	0.7933	44.0	1.79%	26.9	1.09%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-3.710e+00	0.7933	104.0	4.23%	77.8	3.17%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-3.676e+00	0.7933	38.0	1.55%	22.0	0.90%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-3.474e+00	0.7933	173.0	7.04%	140.8	5.73%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-3.170e+00	0.8124	72.0	2.93%	52.5	2.13%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.059e+00	0.8649	43.0	1.75%	28.7	1.17%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-1	-2.873e+00	0.9946	102.0	4.15%	80.3	3.26%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-2.719e+00	1.0000	112.0	4.55%	90.3	3.67%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-2.584e+00	1.0000	16.0	0.65%	8.7	0.35%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.509e+00	1.0000	44.0	1.79%	31.6	1.28%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-2.475e+00	1.0000	45.0	1.83%	32.6	1.33%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-2.436e+00	1.0000	33.0	1.34%	22.6	0.92%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.202e+00	1.0000	47.0	1.91%	35.6	1.45%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.194e+00	1.0000	110.0	4.47%	92.3	3.75%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.131e+00	1.0000	12.0	0.49%	6.2	0.25%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.070e+00	1.0000	73.0	2.97%	59.2	2.41%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.013e+00	1.0000	56.0	2.28%	44.2	1.80%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-2.001e+00	1.0000	463.0	18.83%	433.0	17.61%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.963e+00	1.0000	59.0	2.40%	47.4	1.93%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.932e+00	1.0000	26.0	1.06%	18.7	0.76%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.846e+00	1.0000	56.0	2.28%	45.6	1.86%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.824e+00	1.0000	22.0	0.89%	15.9	0.65%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.824e+00	1.0000	47.0	1.91%	37.9	1.54%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.796e+00	1.0000	11.0	0.45%	6.1	0.25%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-1.761e+00	1.0000	7.0	0.28%	4.0	0.16%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.751e+00	1.0000	106.0	4.31%	92.1	3.75%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.694e+00	1.0000	2401.0	97.64%	2389.6	97.19%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.674e+00	1.0000	4.0	0.16%	1.8	0.08%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.671e+00	1.0000	19.0	0.77%	13.6	0.55%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.658e+00	1.0000	87.0	3.54%	75.1	3.06%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.654e+00	1.0000	47.0	1.91%	38.9	1.58%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.654e+00	1.0000	188.0	7.65%	171.9	6.99%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.633e+00	1.0000	20.0	0.81%	14.5	0.59%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.613e+00	1.0000	50.0	2.03%	41.3	1.68%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.612e+00	1.0000	63.0	2.56%	54.0	2.19%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.569e+00	1.0000	22.0	0.89%	16.8	0.68%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.537e+00	1.0000	383.0	15.58%	362.7	14.75%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.530e+00	1.0000	33.0	1.34%	26.7	1.09%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.525e+00	1.0000	73.0	2.97%	63.9	2.60%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.511e+00	1.0000	16.0	0.65%	11.2	0.46%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.491e+00	1.0000	25.0	1.02%	19.5	0.79%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.485e+00	1.0000	48.0	1.95%	40.1	1.63%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.485e+00	1.0000	5.0	0.20%	2.9	0.12%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.485e+00	1.0000	5.0	0.20%	2.7	0.11%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.475e+00	1.0000	17.0	0.69%	12.6	0.51%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.452e+00	1.0000	38.0	1.55%	31.6	1.28%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-1.441e+00	1.0000	285.0	11.59%	268.1	10.90%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.439e+00	1.0000	39.0	1.59%	32.8	1.34%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.430e+00	1.0000	28.0	1.14%	23.0	0.93%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.426e+00	1.0000	40.0	1.63%	33.4	1.36%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.414e+00	1.0000	19.0	0.77%	14.7	0.60%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.414e+00	1.0000	19.0	0.77%	14.5	0.59%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.408e+00	1.0000	56.0	2.28%	48.3	1.97%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.392e+00	1.0000	58.0	2.36%	51.0	2.07%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.386e+00	1.0000	2.0	0.08%	0.9	0.04%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.380e+00	1.0000	12.0	0.49%	8.4	0.34%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.378e+00	1.0000	122.0	4.96%	111.6	4.54%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.371e+00	1.0000	6.0	0.24%	3.9	0.16%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.371e+00	1.0000	6.0	0.24%	4.0	0.16%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.361e+00	1.0000	46.0	1.87%	39.4	1.60%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.339e+00	1.0000	233.0	9.48%	219.2	8.92%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.329e+00	1.0000	67.0	2.72%	59.2	2.41%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.325e+00	1.0000	23.0	0.94%	19.0	0.77%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.315e+00	1.0000	36.0	1.46%	30.1	1.22%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.312e+00	1.0000	70.0	2.85%	62.3	2.53%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.308e+00	1.0000	14.0	0.57%	10.0	0.41%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.301e+00	1.0000	94.0	3.82%	85.6	3.48%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.293e+00	1.0000	7.0	0.28%	4.4	0.18%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.292e+00	1.0000	152.0	6.18%	141.4	5.75%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.291e+00	1.0000	74.0	3.01%	66.1	2.69%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.275e+00	1.0000	26.0	1.06%	21.1	0.86%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.265e+00	1.0000	41.0	1.67%	35.8	1.45%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.260e+00	1.0000	27.0	1.10%	22.5	0.92%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.260e+00	1.0000	27.0	1.10%	22.5	0.92%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.253e+00	1.0000	16.0	0.65%	12.5	0.51%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.252e+00	1.0000	209.0	8.50%	197.6	8.04%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.247e+00	1.0000	28.0	1.14%	23.6	0.96%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.239e+00	1.0000	143.0	5.82%	133.1	5.41%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.218e+00	1.0000	67.0	2.72%	60.5	2.46%
Tal1	CATCTG	1e0	-1.204e+00	1.0000	70.0	2.85%	63.3	2.58%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.201e+00	1.0000	32.0	1.30%	27.1	1.10%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.176e+00	1.0000	20.0	0.81%	16.3	0.66%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.173e+00	1.0000	35.0	1.42%	30.4	1.23%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.163e+00	1.0000	3.0	0.12%	1.8	0.07%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.158e+00	1.0000	57.0	2.32%	51.1	2.08%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.141e+00	1.0000	157.0	6.38%	148.7	6.05%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.131e+00	1.0000	210.0	8.54%	200.2	8.14%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.130e+00	1.0000	91.0	3.70%	84.4	3.43%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.128e+00	1.0000	11.0	0.45%	8.4	0.34%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.128e+00	1.0000	11.0	0.45%	8.7	0.35%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.128e+00	1.0000	11.0	0.45%	9.0	0.37%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.126e+00	1.0000	269.0	10.94%	258.8	10.53%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.105e+00	1.0000	138.0	5.61%	130.5	5.31%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.104e+00	1.0000	45.0	1.83%	40.7	1.66%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.101e+00	1.0000	26.0	1.06%	23.0	0.93%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.092e+00	1.0000	27.0	1.10%	24.0	0.97%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.083e+00	1.0000	28.0	1.14%	24.5	1.00%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.082e+00	1.0000	13.0	0.53%	10.8	0.44%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.068e+00	1.0000	4.0	0.16%	2.9	0.12%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-1.062e+00	1.0000	288.0	11.71%	278.3	11.32%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.053e+00	1.0000	385.0	15.66%	374.5	15.23%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.048e+00	1.0000	15.0	0.61%	12.4	0.50%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.046e+00	1.0000	33.0	1.34%	29.1	1.18%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.041e+00	1.0000	93.0	3.78%	88.0	3.58%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.037e+00	1.0000	190.0	7.73%	183.0	7.44%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.036e+00	1.0000	61.0	2.48%	56.9	2.32%
SeqBias: CA-repeat	CACACACACA	1e0	-1.034e+00	1.0000	432.0	17.57%	421.9	17.16%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.028e+00	1.0000	36.0	1.46%	32.6	1.33%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.028e+00	1.0000	36.0	1.46%	32.3	1.31%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.022e+00	1.0000	360.0	14.64%	350.1	14.24%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.022e+00	1.0000	37.0	1.50%	33.6	1.36%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-1.022e+00	1.0000	17.0	0.69%	14.6	0.59%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.017e+00	1.0000	38.0	1.55%	34.2	1.39%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.017e+00	1.0000	38.0	1.55%	34.4	1.40%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.012e+00	1.0000	5.0	0.20%	3.1	0.13%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.012e+00	1.0000	5.0	0.20%	3.8	0.15%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.003e+00	1.0000	114.0	4.64%	108.7	4.42%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-9.998e-01	1.0000	19.0	0.77%	16.6	0.67%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-9.913e-01	1.0000	122.0	4.96%	116.1	4.72%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-9.864e-01	1.0000	45.0	1.83%	41.2	1.67%
SeqBias: TA-repeat	TATATATATA	1e0	-9.819e-01	1.0000	82.0	3.33%	77.9	3.17%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-9.818e-01	1.0000	21.0	0.85%	18.0	0.73%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-9.790e-01	1.0000	644.0	26.19%	633.3	25.76%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.753e-01	1.0000	6.0	0.24%	4.7	0.19%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-9.753e-01	1.0000	6.0	0.24%	4.0	0.16%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-9.713e-01	1.0000	691.0	28.10%	681.0	27.69%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-9.671e-01	1.0000	90.0	3.66%	85.9	3.49%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-9.597e-01	1.0000	24.0	0.98%	21.5	0.88%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-9.559e-01	1.0000	97.0	3.94%	92.8	3.77%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-9.500e-01	1.0000	101.0	4.11%	96.6	3.93%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-9.484e-01	1.0000	7.0	0.28%	6.0	0.24%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.484e-01	1.0000	7.0	0.28%	5.9	0.24%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.484e-01	1.0000	7.0	0.28%	5.9	0.24%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-9.484e-01	1.0000	7.0	0.28%	5.1	0.21%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-9.419e-01	1.0000	27.0	1.10%	24.7	1.00%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-9.419e-01	1.0000	27.0	1.10%	24.0	0.98%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-9.377e-01	1.0000	1525.0	62.02%	1514.7	61.60%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-9.329e-01	1.0000	64.0	2.60%	61.0	2.48%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.278e-01	1.0000	8.0	0.33%	6.0	0.25%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.278e-01	1.0000	8.0	0.33%	6.0	0.25%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-9.278e-01	1.0000	8.0	0.33%	7.0	0.28%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-9.278e-01	1.0000	8.0	0.33%	6.7	0.27%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-9.278e-01	1.0000	119.0	4.84%	114.6	4.66%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-9.228e-01	1.0000	31.0	1.26%	28.4	1.15%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-9.228e-01	1.0000	31.0	1.26%	28.3	1.15%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-9.114e-01	1.0000	9.0	0.37%	7.9	0.32%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-9.099e-01	1.0000	681.0	27.69%	672.9	27.37%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.073e-01	1.0000	35.0	1.42%	32.6	1.33%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-9.042e-01	1.0000	232.0	9.43%	226.8	9.22%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-9.039e-01	1.0000	36.0	1.46%	33.6	1.37%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-9.007e-01	1.0000	37.0	1.50%	34.8	1.42%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-9.007e-01	1.0000	37.0	1.50%	34.2	1.39%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-8.979e-01	1.0000	10.0	0.41%	8.1	0.33%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-8.979e-01	1.0000	10.0	0.41%	8.3	0.34%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-8.979e-01	1.0000	10.0	0.41%	8.4	0.34%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-8.959e-01	1.0000	156.0	6.34%	151.1	6.15%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-8.865e-01	1.0000	11.0	0.45%	9.4	0.38%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-8.865e-01	1.0000	11.0	0.45%	9.0	0.37%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-8.684e-01	1.0000	13.0	0.53%	11.7	0.48%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-8.629e-01	1.0000	53.0	2.16%	50.5	2.05%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-8.547e-01	1.0000	58.0	2.36%	55.5	2.26%
SeqBias: CG bias	SSSSSSSSSS	1e0	-8.471e-01	1.0000	1922.0	78.16%	1915.1	77.89%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-8.444e-01	1.0000	149.0	6.06%	146.0	5.94%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-8.434e-01	1.0000	17.0	0.69%	15.8	0.64%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-8.397e-01	1.0000	158.0	6.43%	154.8	6.30%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.386e-01	1.0000	18.0	0.73%	16.8	0.69%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-8.386e-01	1.0000	18.0	0.73%	16.9	0.69%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-8.342e-01	1.0000	19.0	0.77%	17.1	0.69%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-8.335e-01	1.0000	75.0	3.05%	72.7	2.96%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-8.287e-01	1.0000	80.0	3.25%	77.9	3.17%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-8.265e-01	1.0000	21.0	0.85%	19.5	0.79%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-8.199e-01	1.0000	23.0	0.94%	21.3	0.87%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-8.199e-01	1.0000	23.0	0.94%	21.4	0.87%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-8.180e-01	1.0000	215.0	8.74%	211.8	8.62%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-8.140e-01	1.0000	99.0	4.03%	96.3	3.92%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-8.116e-01	1.0000	26.0	1.06%	24.9	1.01%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-8.116e-01	1.0000	26.0	1.06%	24.7	1.00%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-8.074e-01	1.0000	110.0	4.47%	107.8	4.38%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-8.069e-01	1.0000	28.0	1.14%	27.0	1.10%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-8.069e-01	1.0000	28.0	1.14%	26.6	1.08%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-8.039e-01	1.0000	272.0	11.06%	268.7	10.93%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-8.032e-01	1.0000	118.0	4.80%	115.3	4.69%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-7.999e-01	1.0000	125.0	5.08%	122.4	4.98%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-7.945e-01	1.0000	138.0	5.61%	135.5	5.51%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-7.843e-01	1.0000	42.0	1.71%	40.3	1.64%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-7.799e-01	1.0000	46.0	1.87%	44.9	1.83%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-7.772e-01	1.0000	197.0	8.01%	194.1	7.89%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-7.683e-01	1.0000	60.0	2.44%	58.5	2.38%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-7.664e-01	1.0000	63.0	2.56%	61.5	2.50%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-7.634e-01	1.0000	68.0	2.77%	67.0	2.72%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-7.584e-01	1.0000	78.0	3.17%	76.9	3.13%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-7.505e-01	1.0000	1483.0	60.31%	1479.5	60.17%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-7.485e-01	1.0000	106.0	4.31%	104.3	4.24%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-7.383e-01	1.0000	154.0	6.26%	152.3	6.19%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-6.929e-01	1.0000	1.0	0.04%	0.8	0.03%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.929e-01	1.0000	1.0	0.04%	1.0	0.04%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.929e-01	1.0000	1.0	0.04%	0.9	0.04%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-6.929e-01	1.0000	1.0	0.04%	0.0	0.00%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-6.929e-01	1.0000	1.0	0.04%	0.8	0.03%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.929e-01	1.0000	1.0	0.04%	1.0	0.04%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-6.929e-01	1.0000	1.0	0.04%	0.0	0.00%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-6.929e-01	1.0000	1.0	0.04%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-6.929e-01	1.0000	1.0	0.04%	0.0	0.00%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-6.929e-01	1.0000	1.0	0.04%	0.9	0.04%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-6.929e-01	1.0000	1.0	0.04%	0.9	0.04%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.928e-01	1.0000	2.0	0.08%	1.8	0.08%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.928e-01	1.0000	2.0	0.08%	1.0	0.04%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.928e-01	1.0000	3.0	0.12%	3.0	0.12%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.928e-01	1.0000	3.0	0.12%	2.7	0.11%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-6.927e-01	1.0000	4.0	0.16%	3.1	0.13%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.927e-01	1.0000	4.0	0.16%	3.2	0.13%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.927e-01	1.0000	4.0	0.16%	3.1	0.13%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-6.926e-01	1.0000	5.0	0.20%	4.1	0.17%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-6.926e-01	1.0000	5.0	0.20%	4.1	0.17%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.926e-01	1.0000	5.0	0.20%	4.7	0.19%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.926e-01	1.0000	5.0	0.20%	4.1	0.17%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-6.926e-01	1.0000	5.0	0.20%	4.9	0.20%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.926e-01	1.0000	6.0	0.24%	6.0	0.24%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-6.926e-01	1.0000	6.0	0.24%	5.5	0.22%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-6.925e-01	1.0000	7.0	0.28%	6.0	0.24%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.925e-01	1.0000	8.0	0.33%	7.9	0.32%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.925e-01	1.0000	8.0	0.33%	7.5	0.31%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-6.925e-01	1.0000	8.0	0.33%	8.0	0.32%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-6.925e-01	1.0000	9.0	0.37%	8.5	0.35%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-6.924e-01	1.0000	10.0	0.41%	9.1	0.37%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.924e-01	1.0000	11.0	0.45%	10.1	0.41%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.924e-01	1.0000	12.0	0.49%	11.2	0.46%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-6.923e-01	1.0000	13.0	0.53%	12.3	0.50%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.923e-01	1.0000	14.0	0.57%	13.2	0.54%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.923e-01	1.0000	14.0	0.57%	13.9	0.57%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.921e-01	1.0000	21.0	0.85%	20.5	0.84%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-6.921e-01	1.0000	21.0	0.85%	20.4	0.83%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-6.921e-01	1.0000	21.0	0.85%	20.9	0.85%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-6.920e-01	1.0000	23.0	0.94%	22.5	0.92%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-6.920e-01	1.0000	26.0	1.06%	25.3	1.03%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.919e-01	1.0000	29.0	1.18%	28.9	1.17%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.919e-01	1.0000	31.0	1.26%	30.3	1.23%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-6.917e-01	1.0000	37.0	1.50%	36.8	1.50%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-6.917e-01	1.0000	37.0	1.50%	36.4	1.48%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-6.916e-01	1.0000	45.0	1.83%	44.3	1.80%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.913e-01	1.0000	61.0	2.48%	60.3	2.45%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-6.912e-01	1.0000	69.0	2.81%	68.8	2.80%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.910e-01	1.0000	84.0	3.42%	83.0	3.38%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-6.909e-01	1.0000	93.0	3.78%	92.4	3.76%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-6.907e-01	1.0000	106.0	4.31%	105.1	4.27%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-6.907e-01	1.0000	109.0	4.43%	108.2	4.40%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-6.904e-01	1.0000	139.0	5.65%	138.1	5.62%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-6.409e-01	1.0000	129.0	5.25%	129.9	5.28%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.362e-01	1.0000	105.0	4.27%	105.9	4.31%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.175e-01	1.0000	253.0	10.29%	254.1	10.33%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.143e-01	1.0000	50.0	2.03%	50.6	2.06%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.078e-01	1.0000	42.0	1.71%	42.1	1.71%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.049e-01	1.0000	39.0	1.59%	39.1	1.59%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-6.017e-01	1.0000	36.0	1.46%	36.0	1.46%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-5.967e-01	1.0000	32.0	1.30%	32.4	1.32%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-5.871e-01	1.0000	26.0	1.06%	26.0	1.06%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-5.763e-01	1.0000	21.0	0.85%	21.5	0.88%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.763e-01	1.0000	21.0	0.85%	21.0	0.86%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-5.709e-01	1.0000	19.0	0.77%	19.2	0.78%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-5.709e-01	1.0000	79.0	3.21%	80.9	3.29%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-5.610e-01	1.0000	16.0	0.65%	16.5	0.67%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.584e-01	1.0000	150.0	6.10%	152.3	6.20%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-5.533e-01	1.0000	58.0	2.36%	59.7	2.43%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.477e-01	1.0000	53.0	2.16%	54.2	2.20%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-5.427e-01	1.0000	49.0	1.99%	50.1	2.04%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-5.409e-01	1.0000	2352.0	95.65%	2353.5	95.72%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.405e-01	1.0000	111.0	4.51%	113.8	4.63%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-5.367e-01	1.0000	11.0	0.45%	11.6	0.47%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.337e-01	1.0000	100.0	4.07%	102.9	4.19%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.299e-01	1.0000	10.0	0.41%	10.7	0.44%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.299e-01	1.0000	10.0	0.41%	10.8	0.44%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.288e-01	1.0000	40.0	1.63%	41.8	1.70%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.221e-01	1.0000	9.0	0.37%	9.1	0.37%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-5.221e-01	1.0000	9.0	0.37%	9.0	0.37%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-5.167e-01	1.0000	2235.0	90.89%	2238.8	91.05%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-5.155e-01	1.0000	143.0	5.82%	146.5	5.96%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.135e-01	1.0000	139.0	5.65%	142.2	5.78%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.130e-01	1.0000	8.0	0.33%	8.4	0.34%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.130e-01	1.0000	8.0	0.33%	8.4	0.34%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-5.072e-01	1.0000	30.0	1.22%	31.1	1.26%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-5.072e-01	1.0000	30.0	1.22%	31.0	1.26%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-5.056e-01	1.0000	125.0	5.08%	128.1	5.21%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.045e-01	1.0000	29.0	1.18%	30.2	1.23%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-5.022e-01	1.0000	7.0	0.28%	7.7	0.32%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.022e-01	1.0000	7.0	0.28%	7.3	0.30%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-4.987e-01	1.0000	27.0	1.10%	28.1	1.14%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-4.899e-01	1.0000	56.0	2.28%	58.1	2.36%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.891e-01	1.0000	6.0	0.24%	6.0	0.24%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-4.891e-01	1.0000	6.0	0.24%	6.1	0.25%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-4.891e-01	1.0000	6.0	0.24%	6.6	0.27%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-4.891e-01	1.0000	6.0	0.24%	7.0	0.28%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-4.879e-01	1.0000	100.0	4.07%	103.5	4.21%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-4.848e-01	1.0000	156.0	6.34%	160.5	6.53%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.836e-01	1.0000	95.0	3.86%	98.9	4.02%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-4.747e-01	1.0000	47.0	1.91%	49.1	2.00%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-4.725e-01	1.0000	5.0	0.20%	5.7	0.23%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-4.687e-01	1.0000	44.0	1.79%	46.0	1.87%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.628e-01	1.0000	255.0	10.37%	261.6	10.64%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.628e-01	1.0000	18.0	0.73%	19.9	0.81%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-4.575e-01	1.0000	114.0	4.64%	119.0	4.84%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-4.573e-01	1.0000	39.0	1.59%	41.5	1.69%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.573e-01	1.0000	17.0	0.69%	18.4	0.75%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-4.509e-01	1.0000	4.0	0.16%	4.0	0.16%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.509e-01	1.0000	4.0	0.16%	4.0	0.16%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.509e-01	1.0000	4.0	0.16%	4.9	0.20%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-4.509e-01	1.0000	4.0	0.16%	4.1	0.17%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-4.450e-01	1.0000	15.0	0.61%	16.5	0.67%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.450e-01	1.0000	15.0	0.61%	16.7	0.68%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.401e-01	1.0000	95.0	3.86%	99.4	4.04%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-4.377e-01	1.0000	58.0	2.36%	61.6	2.51%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.269e-01	1.0000	172.0	6.99%	178.8	7.27%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-4.240e-01	1.0000	28.0	1.14%	30.5	1.24%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-4.237e-01	1.0000	2339.0	95.12%	2343.2	95.30%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.208e-01	1.0000	3.0	0.12%	4.0	0.16%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.208e-01	1.0000	3.0	0.12%	3.2	0.13%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-4.161e-01	1.0000	26.0	1.06%	28.7	1.17%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-4.158e-01	1.0000	47.0	1.91%	50.7	2.06%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-4.158e-01	1.0000	47.0	1.91%	50.9	2.07%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.106e-01	1.0000	105.0	4.27%	110.5	4.49%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-4.106e-01	1.0000	105.0	4.27%	110.5	4.50%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-4.073e-01	1.0000	24.0	0.98%	26.1	1.06%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-4.053e-01	1.0000	68.0	2.77%	72.1	2.93%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-4.022e-01	1.0000	10.0	0.41%	11.2	0.46%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-4.021e-01	1.0000	66.0	2.68%	70.0	2.85%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.977e-01	1.0000	22.0	0.89%	24.9	1.01%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.924e-01	1.0000	21.0	0.85%	23.6	0.96%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-3.914e-01	1.0000	60.0	2.44%	64.7	2.63%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-3.868e-01	1.0000	20.0	0.81%	22.9	0.93%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-3.768e-01	1.0000	8.0	0.33%	9.3	0.38%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.647e-01	1.0000	30.0	1.22%	33.2	1.35%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.611e-01	1.0000	7.0	0.28%	8.6	0.35%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.611e-01	1.0000	7.0	0.28%	8.3	0.34%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-3.611e-01	1.0000	7.0	0.28%	8.3	0.34%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-3.425e-01	1.0000	6.0	0.24%	7.2	0.29%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.424e-01	1.0000	107.0	4.35%	114.4	4.65%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-3.385e-01	1.0000	78.0	3.17%	84.4	3.43%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.207e-01	1.0000	21.0	0.85%	24.1	0.98%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.156e-01	1.0000	47.0	1.91%	52.6	2.14%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.080e-01	1.0000	19.0	0.77%	22.1	0.90%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.080e-01	1.0000	19.0	0.77%	22.9	0.93%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.024e-01	1.0000	10.0	0.41%	12.2	0.50%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.930e-01	1.0000	93.0	3.78%	101.8	4.14%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.878e-01	1.0000	112.0	4.55%	121.8	4.95%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.875e-01	1.0000	1.0	0.04%	1.0	0.04%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.875e-01	1.0000	1.0	0.04%	1.1	0.05%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-2.875e-01	1.0000	1.0	0.04%	1.9	0.08%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-2.875e-01	1.0000	1.0	0.04%	1.1	0.04%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-2.775e-01	1.0000	15.0	0.61%	18.9	0.77%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-2.603e-01	1.0000	21.0	0.85%	25.6	1.04%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.570e-01	1.0000	7.0	0.28%	9.4	0.38%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-2.565e-01	1.0000	3.0	0.12%	4.3	0.17%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-2.523e-01	1.0000	29.0	1.18%	34.7	1.41%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.415e-01	1.0000	37.0	1.50%	43.4	1.76%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.401e-01	1.0000	18.0	0.73%	22.5	0.92%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.375e-01	1.0000	6.0	0.24%	8.3	0.34%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.972e-01	1.0000	8.0	0.33%	11.2	0.46%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.886e-01	1.0000	109.0	4.43%	122.4	4.98%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.881e-01	1.0000	4.0	0.16%	6.6	0.27%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.636e-01	1.0000	27.0	1.10%	34.5	1.40%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-7.333e-02	1.0000	15.0	0.61%	23.1	0.94%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	1.0	0.04%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	2459.0	100.00%	2458.8	100.00%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%