Information for 4-GCGGTCTGCT (Motif 8)


Reverse Opposite:

p-value:1e-2
log p-value:-5.145e+00
Information Content per bp:1.844
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets29.5 +/- 6.1bp
Average Position of motif in Background26.7 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ROX1(MacIsaac)/Yeast

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GCGGTCTGCT
GCGGGCTTNT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GCGGTCTGCT
VBSYGTCTGG-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCGGTCTGCT
-CTGTCTGG-

Adf1/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCGGTCTGCT
CGCGGTCG---

RUNX2/MA0511.2/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCGGTCTGCT
TTGCGGTTT---

Run/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCGGTCTGCT
GGCGGTG----

RUNX3/MA0684.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GCGGTCTGCT
TTTGCGGTTT---

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCGGTCTGCT
-TWGTCTGV-

STB5(MacIsaac)/Yeast

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCGGTCTGCT-
-CGGTGTTATA

Bgb::run/MA0242.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCGGTCTGCT
TTGCGGTTA---