Information for 1-ATCTCA (Motif 9)


Reverse Opposite:

p-value:1e-1
log p-value:-4.574e+00
Information Content per bp:1.831
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif6.71%
Number of Background Sequences with motif14.5
Percentage of Background Sequences with motif3.26%
Average Position of motif in Targets11.7 +/- 5.8bp
Average Position of motif in Background10.8 +/- 7.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ARR10/MA0121.1/Jaspar

Match Rank:1
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----ATCTCA
GCGGATCT--

ARR1/MA0945.1/Jaspar

Match Rank:2
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----ATCTCA
AGCGAATCTT-

GATA8/MA1017.1/Jaspar

Match Rank:3
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----ATCTCA
NNAGATCTN-

ECM23/MA0293.1/Jaspar

Match Rank:4
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----ATCTCA
NNNAGATCTNN

ARR10(GARP)/Arabidopsis thaliana/AthaMap

Match Rank:5
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----ATCTCA--
GCGGATCTTANC

SRD1/MA0389.1/Jaspar

Match Rank:6
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--ATCTCA
AGATCTAC

ARR2/MA0949.1/Jaspar

Match Rank:7
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----ATCTCA
GCGAATCTTT

ARR18/MA0948.1/Jaspar

Match Rank:8
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----ATCTCA--
NNCGTATCTNNNN

GATA12/MA1015.1/Jaspar

Match Rank:9
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---ATCTCA
TAGATCTA-

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----ATCTCA
YSTTATCT--