Information for 4-CTCCGCCTCC (Motif 6)


Reverse Opposite:

p-value:1e-3
log p-value:-6.949e+00
Information Content per bp:1.768
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif2.24%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets14.2 +/- 2.6bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CTCCGCCTCC
GCTCGGSCTC-

CHA4/MA0283.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CTCCGCCTCC
TCTCCGCC---

SP1/MA0079.3/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTCCGCCTCC
GCCCCGCCCCC

eor-1/MA0543.1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTCCGCCTCC--
TCTCTGCGTCTCTNN

POL003.1_GC-box/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTCCGCCTCC-
NAGCCCCGCCCCCN

SP2/MA0516.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTCCGCCTCC----
GCCCCGCCCCCTCCC

ABI4(1)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCCGCCTCC
CACCGCCCCC

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTCCGCCTCC
TTCCCCCTAC

Sp1(Zf)/Promoter/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTCCGCCTCC
GGCCCCGCCCCC

EGR1/MA0162.2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CTCCGCCTCC
CCCCCGCCCCCGCC