Information for 2-CACAGTCKCC (Motif 4)


Reverse Opposite:

p-value:1e-3
log p-value:-6.949e+00
Information Content per bp:1.768
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif2.24%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets13.9 +/- 3.8bp
Average Position of motif in Background20.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MET28/MA0332.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CACAGTCKCC
CCACAG-----

MET28(MacIsaac)/Yeast

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CACAGTCKCC
CCACAG-----

odd/MA0454.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CACAGTCKCC-
AACAGTAGCAG

MET31/Literature(Harbison)/Yeast

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CACAGTCKCC
CCACAGTTT--

MET32/Literature(Harbison)/Yeast

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CACAGTCKCC
CCACAGTTT--

odd/dmmpmm(Noyes)/fly

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CACAGTCKCC
AACAGTAGCA

ANT(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CACAGTCKCC-----
GCACAGTTCCCGAGGT

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CACAGTCKCC
CACAGN----

TEC1(MacIsaac)/Yeast

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CACAGTCKCC
CACATTCT--

PB0051.1_Osr2_1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CACAGTCKCC---
ATGTACAGTAGCAAAG