Information for 1-GTGGSCMT (Motif 3)


Reverse Opposite:

p-value:1e-3
log p-value:-7.288e+00
Information Content per bp:1.734
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif4.92%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif1.19%
Average Position of motif in Targets12.4 +/- 3.4bp
Average Position of motif in Background10.5 +/- 5.6bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hic1/MA0739.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-GTGGSCMT
GGTTGGCAT

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GTGGSCMT
NGTGGGCAT

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----GTGGSCMT---
NGTAGGTTGGCATNNN

RFX1/MA0365.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTGGSCMT
GGTTGCCA-

MET32/MA0334.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GTGGSCMT
TGTGGCG--

TCP23/MA1066.1/Jaspar

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTGGSCMT
GTGGGCCC

TCP15/MA1062.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTGGSCMT
GTGGGCCC

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTGGSCMT-
NGCGTGGGCGGR

YPR022C/MA0436.1/Jaspar

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GTGGSCMT
NGTGGGG--

OsI_08196/MA1050.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTGGSCMT
GTGGGCCC