Information for 1-CAGGCATGAG (Motif 2)


Reverse Opposite:

p-value:1e-3
log p-value:-8.962e+00
Information Content per bp:1.763
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif3.58%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets13.2 +/- 3.7bp
Average Position of motif in Background19.7 +/- 0.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

pros/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CAGGCATGAG
-AGNCATG--

INO2/INO2_YPD/1-INO4,2-INO2(Harbison)/Yeast

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CAGGCATGAG
---GCATGTG

YAP5/MA0417.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAGGCATGAG
-AAGCAT---

YAP5(MacIsaac)/Yeast

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CAGGCATGAG
-AAGCAT---

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CAGGCATGAG-
AAGGCAAGTGT

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CAGGCATGAG
SCAGYCADGCATGAC

INO2/MA0321.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAGGCATGAG--
---GCATGTGAA

MOT3/Literature(Harbison)/Yeast

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGGCATGAG
NAGGCA----

MOT3(MacIsaac)/Yeast

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGGCATGAG
NAGGCA----

MOT3/MA0340.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGGCATGAG
AAGGCA----