Information for 5-CTCCGCCTCC (Motif 9)


Reverse Opposite:

p-value:1e-2
log p-value:-5.674e+00
Information Content per bp:1.716
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif3.80%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.96%
Average Position of motif in Targets11.1 +/- 3.0bp
Average Position of motif in Background9.9 +/- 3.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHA4/MA0283.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-CTCCGCCTCC
TCTCCGCC---

SP1/MA0079.3/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CTCCGCCTCC
GCCCCGCCCCC

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTCCGCCTCC
GCTCGGSCTC-

SP2/MA0516.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTCCGCCTCC----
GCCCCGCCCCCTCCC

POL003.1_GC-box/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CTCCGCCTCC-
NAGCCCCGCCCCCN

btd/MA0443.1/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CTCCGCCTCC-
-TCCGCCCCCT

EGR1/MA0162.2/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTCCGCCTCC---
CCCCCGCCCCCGCC

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CTCCGCCTCC
GGCCCCGCCCCC

ABI4(1)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTCCGCCTCC
CACCGCCCCC

btd/dmmpmm(Noyes)/fly

Match Rank:10
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTCCGCCTCC
ATCCGCCCCC