Information for 3-RAAGGGARAG (Motif 8)


Reverse Opposite:

p-value:1e-2
log p-value:-6.267e+00
Information Content per bp:1.690
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif4.47%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif1.18%
Average Position of motif in Targets11.2 +/- 3.6bp
Average Position of motif in Background12.5 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-RAAGGGARAG-
GAAAGTGAAAGT

PRDM1/MA0508.1/Jaspar

Match Rank:2
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--RAAGGGARAG---
AGAAAGTGAAAGTGA

blmp-1/MA0537.1/Jaspar

Match Rank:3
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-RAAGGGARAG
AAAAGTGAAAA

Blimp-1/dmmpmm(Noyes)/fly

Match Rank:4
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----RAAGGGARAG-
AANGAAAGTGAAAGT

PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:5
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-RAAGGGARAG-
GGAAGTGAAAST

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--RAAGGGARAG
CGGAAGTGAAAC

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:7
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-RAAGGGARAG-
GAAAGTGAAAGT

IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer

Match Rank:8
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-RAAGGGARAG-
GAAASYGAAASY

IRF2/MA0051.1/Jaspar

Match Rank:9
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--RAAGGGARAG------
GGAAAGCGAAACCAAAAC

IRF1/MA0050.2/Jaspar

Match Rank:10
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------RAAGGGARAG-----
AAANNGAAAGTGAAAGTAAAN