Information for 3-WKSGCYYGCTGY (Motif 7)


Reverse Opposite:

p-value:1e-3
log p-value:-6.949e+00
Information Content per bp:1.686
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif2.24%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets10.2 +/- 2.7bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:WKSGCYYGCTGY----
-NNTCCTGCTGTGNNN

ACE2/MA0267.1/Jaspar

Match Rank:2
Score:0.73
Offset:6
Orientation:reverse strand
Alignment:WKSGCYYGCTGY-
------TGCTGGT

SWI5(MacIsaac)/Yeast

Match Rank:3
Score:0.73
Offset:6
Orientation:forward strand
Alignment:WKSGCYYGCTGY--
------TGCTGGTT

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.73
Offset:6
Orientation:reverse strand
Alignment:WKSGCYYGCTGY
------NGCTN-

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:WKSGCYYGCTGY----
-TCNCCTGCTGNGNNN

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:WKSGCYYGCTGY----
-TNTCCTGCTGTGNNG

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.72
Offset:4
Orientation:forward strand
Alignment:WKSGCYYGCTGY--
----CCTGCTGAGH

SWI5/Literature(Harbison)/Yeast

Match Rank:8
Score:0.71
Offset:6
Orientation:forward strand
Alignment:WKSGCYYGCTGY
------GGCTGA

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.71
Offset:7
Orientation:forward strand
Alignment:WKSGCYYGCTGY-
-------GCTGTG

SWI5/MA0402.1/Jaspar

Match Rank:10
Score:0.70
Offset:6
Orientation:forward strand
Alignment:WKSGCYYGCTGY--
------TGCTGGTT