Information for 3-CATGGCAT (Motif 6)


Reverse Opposite:

p-value:1e-3
log p-value:-7.273e+00
Information Content per bp:1.751
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif4.03%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets10.9 +/- 3.0bp
Average Position of motif in Background12.0 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GAT3(MacIsaac)/Yeast

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CATGGCAT
CATGTTAT

RIM101/Literature(Harbison)/Yeast

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CATGGCAT
CTTGGCA-

RIM101(MacIsaac)/Yeast

Match Rank:3
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CATGGCAT
CTTGGCA-

NAC92/MA1044.1/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CATGGCAT-
TAACACGCCACA

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CATGGCAT
CATGAC--

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CATGGCAT
ARNTGACA-

pros/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CATGGCAT
CATGNCT-

pho/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CATGGCAT
AATGGC--

INO2/MA0321.1/Jaspar

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CATGGCAT
GCATGTGAA

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CATGGCAT
CCTGTCAA